Gchil348.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil348.t1
Unique NameGchil348.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:445843..446994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil348Gchil348Gracilaria chilensis NLEC103_M9 malegenetig00000212_pilon 445843..446994 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil348.t1.stop1Gchil348.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000212_pilon 445843..445845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil348.t1.CDS1Gchil348.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000212_pilon 445843..446994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil348.t1.exon1Gchil348.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000212_pilon 445843..446994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil348.t1.start1Gchil348.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000212_pilon 446992..446994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil348.t1Gchil348.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000212_pilon 445843..446994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil348.t1 ID=Gchil348.t1|Name=Gchil348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp
MVIIPLKSQHVSLVATFMSVTSETALLFAALRWNCLFENKTLQRRRTINV
RNHRTRTKLLAAAATVIFVIIELFNSFYSDPTTVEISERRPCTFLASGGG
QKGFTNTTSLSSIILLHCLDANRTTIRQSGGYLFQDGNDFVAQCLDPLYS
FSTDNAPQESVPETDYFTGCVELPELAEPLPEDETTVCVFFYQNKARVTF
TESVLGSDVPYVVNEKLLLHVWHTDVYFNITGMETEFARRAATMLLESSP
PAITLRREVFTVDGVGMCDFKKQIEATTVSEGFIYALALASSLSFLVAVA
SLFFRSHMCFDMSNPLDWAQKTVISEHLLGAENPEVFCLDSEEKQFIVLS
NLKKSCASRVRLDGGSPICFADVPQAQAEMQTQ*
back to top

spliced messenger RNA

>Gchil348.t1 ID=Gchil348.t1|Name=Gchil348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000212_pilon:445843..446994- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGATCATCCCTCTCAAGTCCCAACACGTCAGTCTTGTCGCCACGTT
TATGTCCGTCACCTCCGAGACAGCTCTACTGTTTGCTGCACTCCGCTGGA
ATTGTCTGTTCGAGAACAAGACGCTTCAACGACGAAGAACCATTAACGTG
CGGAACCATCGAACTCGCACCAAGCTACTGGCCGCGGCAGCCACCGTCAT
CTTTGTCATCATCGAGTTATTCAACTCCTTTTACAGCGACCCAACTACAG
TTGAGATATCGGAGAGAAGGCCTTGTACTTTTCTGGCATCAGGTGGGGGA
CAGAAAGGTTTCACAAACACAACCTCTCTGTCGAGTATCATTTTGCTTCA
TTGTCTCGATGCAAATCGCACTACCATACGACAAAGTGGAGGGTATTTGT
TCCAGGACGGGAACGACTTCGTAGCTCAATGCTTGGATCCATTGTATTCT
TTTTCGACGGACAATGCACCGCAAGAGTCCGTACCAGAAACTGACTACTT
TACAGGGTGCGTGGAACTTCCCGAACTAGCGGAGCCTCTTCCTGAAGATG
AAACAACAGTTTGTGTATTCTTCTATCAAAATAAAGCACGGGTAACATTT
ACGGAATCTGTTCTTGGAAGCGATGTGCCGTATGTGGTTAATGAAAAACT
TTTGCTCCACGTCTGGCACACTGATGTTTATTTCAATATCACCGGAATGG
AAACAGAGTTTGCAAGAAGGGCCGCAACCATGCTGTTGGAGTCATCTCCT
CCTGCCATCACTTTGCGTCGAGAAGTGTTCACAGTGGATGGTGTGGGCAT
GTGTGATTTTAAGAAGCAAATCGAGGCTACTACCGTAAGCGAGGGATTTA
TTTACGCGTTGGCACTTGCATCATCTCTGTCCTTCCTGGTTGCGGTGGCG
AGTTTGTTCTTCCGTTCTCATATGTGCTTTGACATGAGTAATCCTTTGGA
TTGGGCGCAGAAAACTGTAATTAGTGAACACCTTCTCGGCGCTGAGAACC
CAGAGGTCTTTTGCTTGGACTCGGAAGAAAAACAGTTTATCGTTTTATCG
AATTTGAAGAAGTCGTGTGCAAGTCGCGTACGCTTGGATGGAGGCTCTCC
AATATGTTTCGCAGACGTTCCCCAAGCACAGGCGGAGATGCAAACGCAGT
AG
back to top

protein sequence of Gchil348.t1

>Gchil348.t1 ID=Gchil348.t1|Name=Gchil348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=384bp
MVIIPLKSQHVSLVATFMSVTSETALLFAALRWNCLFENKTLQRRRTINV
RNHRTRTKLLAAAATVIFVIIELFNSFYSDPTTVEISERRPCTFLASGGG
QKGFTNTTSLSSIILLHCLDANRTTIRQSGGYLFQDGNDFVAQCLDPLYS
FSTDNAPQESVPETDYFTGCVELPELAEPLPEDETTVCVFFYQNKARVTF
TESVLGSDVPYVVNEKLLLHVWHTDVYFNITGMETEFARRAATMLLESSP
PAITLRREVFTVDGVGMCDFKKQIEATTVSEGFIYALALASSLSFLVAVA
SLFFRSHMCFDMSNPLDWAQKTVISEHLLGAENPEVFCLDSEEKQFIVLS
NLKKSCASRVRLDGGSPICFADVPQAQAEMQTQ*
back to top

mRNA from alignment at tig00000212_pilon:445843..446994-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil348.t1 ID=Gchil348.t1|Name=Gchil348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000212_pilon:445843..446994- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGATCATCCCTCTCAAGTCCCAACACGTCAGTCTTGTCGCCACGTT
TATGTCCGTCACCTCCGAGACAGCTCTACTGTTTGCTGCACTCCGCTGGA
ATTGTCTGTTCGAGAACAAGACGCTTCAACGACGAAGAACCATTAACGTG
CGGAACCATCGAACTCGCACCAAGCTACTGGCCGCGGCAGCCACCGTCAT
CTTTGTCATCATCGAGTTATTCAACTCCTTTTACAGCGACCCAACTACAG
TTGAGATATCGGAGAGAAGGCCTTGTACTTTTCTGGCATCAGGTGGGGGA
CAGAAAGGTTTCACAAACACAACCTCTCTGTCGAGTATCATTTTGCTTCA
TTGTCTCGATGCAAATCGCACTACCATACGACAAAGTGGAGGGTATTTGT
TCCAGGACGGGAACGACTTCGTAGCTCAATGCTTGGATCCATTGTATTCT
TTTTCGACGGACAATGCACCGCAAGAGTCCGTACCAGAAACTGACTACTT
TACAGGGTGCGTGGAACTTCCCGAACTAGCGGAGCCTCTTCCTGAAGATG
AAACAACAGTTTGTGTATTCTTCTATCAAAATAAAGCACGGGTAACATTT
ACGGAATCTGTTCTTGGAAGCGATGTGCCGTATGTGGTTAATGAAAAACT
TTTGCTCCACGTCTGGCACACTGATGTTTATTTCAATATCACCGGAATGG
AAACAGAGTTTGCAAGAAGGGCCGCAACCATGCTGTTGGAGTCATCTCCT
CCTGCCATCACTTTGCGTCGAGAAGTGTTCACAGTGGATGGTGTGGGCAT
GTGTGATTTTAAGAAGCAAATCGAGGCTACTACCGTAAGCGAGGGATTTA
TTTACGCGTTGGCACTTGCATCATCTCTGTCCTTCCTGGTTGCGGTGGCG
AGTTTGTTCTTCCGTTCTCATATGTGCTTTGACATGAGTAATCCTTTGGA
TTGGGCGCAGAAAACTGTAATTAGTGAACACCTTCTCGGCGCTGAGAACC
CAGAGGTCTTTTGCTTGGACTCGGAAGAAAAACAGTTTATCGTTTTATCG
AATTTGAAGAAGTCGTGTGCAAGTCGCGTACGCTTGGATGGAGGCTCTCC
AATATGTTTCGCAGACGTTCCCCAAGCACAGGCGGAGATGCAAACGCAGT
AG
back to top

Coding sequence (CDS) from alignment at tig00000212_pilon:445843..446994-

>Gchil348.t1 ID=Gchil348.t1|Name=Gchil348.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00000212_pilon:445843..446994- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGATCATCCCTCTCAAGTCCCAACACGTCAGTCTTGTCGCCACGTT
TATGTCCGTCACCTCCGAGACAGCTCTACTGTTTGCTGCACTCCGCTGGA
ATTGTCTGTTCGAGAACAAGACGCTTCAACGACGAAGAACCATTAACGTG
CGGAACCATCGAACTCGCACCAAGCTACTGGCCGCGGCAGCCACCGTCAT
CTTTGTCATCATCGAGTTATTCAACTCCTTTTACAGCGACCCAACTACAG
TTGAGATATCGGAGAGAAGGCCTTGTACTTTTCTGGCATCAGGTGGGGGA
CAGAAAGGTTTCACAAACACAACCTCTCTGTCGAGTATCATTTTGCTTCA
TTGTCTCGATGCAAATCGCACTACCATACGACAAAGTGGAGGGTATTTGT
TCCAGGACGGGAACGACTTCGTAGCTCAATGCTTGGATCCATTGTATTCT
TTTTCGACGGACAATGCACCGCAAGAGTCCGTACCAGAAACTGACTACTT
TACAGGGTGCGTGGAACTTCCCGAACTAGCGGAGCCTCTTCCTGAAGATG
AAACAACAGTTTGTGTATTCTTCTATCAAAATAAAGCACGGGTAACATTT
ACGGAATCTGTTCTTGGAAGCGATGTGCCGTATGTGGTTAATGAAAAACT
TTTGCTCCACGTCTGGCACACTGATGTTTATTTCAATATCACCGGAATGG
AAACAGAGTTTGCAAGAAGGGCCGCAACCATGCTGTTGGAGTCATCTCCT
CCTGCCATCACTTTGCGTCGAGAAGTGTTCACAGTGGATGGTGTGGGCAT
GTGTGATTTTAAGAAGCAAATCGAGGCTACTACCGTAAGCGAGGGATTTA
TTTACGCGTTGGCACTTGCATCATCTCTGTCCTTCCTGGTTGCGGTGGCG
AGTTTGTTCTTCCGTTCTCATATGTGCTTTGACATGAGTAATCCTTTGGA
TTGGGCGCAGAAAACTGTAATTAGTGAACACCTTCTCGGCGCTGAGAACC
CAGAGGTCTTTTGCTTGGACTCGGAAGAAAAACAGTTTATCGTTTTATCG
AATTTGAAGAAGTCGTGTGCAAGTCGCGTACGCTTGGATGGAGGCTCTCC
AATATGTTTCGCAGACGTTCCCCAAGCACAGGCGGAGATGCAAACGCAGT
AG
back to top