Gchil3447.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3447.t1
Unique NameGchil3447.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:180796..181887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3447Gchil3447Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 180796..181887 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3447.t1.stop1Gchil3447.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 180796..180798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3447.t1.CDS1Gchil3447.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 180796..181887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3447.t1.exon1Gchil3447.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 180796..181887 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3447.t1.start1Gchil3447.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 181885..181887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3447.t1Gchil3447.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 180796..181887 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3447.t1 ID=Gchil3447.t1|Name=Gchil3447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MGDAPRDSGVFGSLDSLEPDDAMDPMLLNLPAPEPADWALDPLAPDLYPL
AYMDAPSLPASAPPASPSRAPHPPEQPPPPPEPSPPSSPPPPPPPPPPPP
PPPPPLQRAPSAPQASPASSAPRARKRPPPQSPSPSSTSGKRVPTAVCSN
CGKAVANNGANFRRHETACRRSRAPVVGVARDEELLHTVQRLHNSISSLD
VSARVCLRDALLSLSNKAANPTATPTPQQEAMNRAAEYLVLRMLFLSGAQ
LLMHTAPGTAPPYPSTSSHVAPEMQPLAGQGDGDAQAAATAAAAAAAAAA
AATAAAAAAQGAVESHAPSPSPPAPTAVTPPSQQQPQQQQLLAGAAQAGV
SQAVKEHKTAHAP*
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spliced messenger RNA

>Gchil3447.t1 ID=Gchil3447.t1|Name=Gchil3447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004378_pilon:180796..181887- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACGCGCCGCGCGACTCTGGCGTGTTCGGCTCGCTGGACTCGCT
GGAGCCCGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGCGCCCG
AGCCCGCCGACTGGGCGCTAGACCCGCTGGCGCCCGACTTGTACCCGCTG
GCGTATATGGACGCGCCGTCGCTGCCTGCCAGCGCGCCGCCCGCGTCGCC
ATCACGCGCGCCGCATCCGCCCGAACAACCCCCCCCACCGCCCGAGCCAT
CTCCGCCGTCGTCGCCGCCACCACCACCACCACCACCTCCTCCTCCGCCT
CCTCCGCCACCGCCTCTGCAGCGCGCGCCGTCCGCACCGCAAGCATCACC
CGCTTCTTCCGCACCGCGAGCGCGAAAGCGTCCGCCCCCGCAGTCGCCAT
CGCCGTCGTCCACTTCAGGTAAAAGGGTGCCCACCGCGGTGTGCTCCAAC
TGCGGCAAGGCGGTGGCCAACAACGGCGCCAACTTCCGGCGCCACGAGAC
GGCATGCAGACGATCGCGCGCGCCTGTGGTCGGCGTGGCGCGCGACGAGG
AGCTGTTACACACCGTGCAGCGGCTGCACAACAGCATCTCGTCGCTTGAT
GTGTCGGCACGCGTATGTCTGCGCGACGCGCTGCTGTCACTCAGTAACAA
GGCTGCCAATCCAACCGCCACGCCCACGCCGCAGCAGGAGGCTATGAACC
GCGCTGCCGAGTATTTGGTGTTGCGTATGCTCTTCTTGTCGGGCGCGCAA
CTTCTCATGCATACTGCGCCTGGCACCGCGCCGCCTTACCCCTCGACGTC
GTCGCATGTAGCGCCCGAGATGCAGCCACTGGCGGGACAGGGCGACGGCG
ACGCGCAGGCTGCTGCGACAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCG
GCAGCAACGGCAGCAGCAGCTGCGGCGCAGGGCGCCGTGGAGTCGCACGC
ACCGTCACCGTCACCGCCGGCGCCGACGGCGGTGACACCGCCGTCGCAGC
AACAGCCACAACAGCAGCAGCTGCTGGCTGGCGCCGCACAAGCGGGAGTG
TCACAGGCGGTCAAGGAGCACAAGACAGCACACGCTCCATAG
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protein sequence of Gchil3447.t1

>Gchil3447.t1 ID=Gchil3447.t1|Name=Gchil3447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MGDAPRDSGVFGSLDSLEPDDAMDPMLLNLPAPEPADWALDPLAPDLYPL
AYMDAPSLPASAPPASPSRAPHPPEQPPPPPEPSPPSSPPPPPPPPPPPP
PPPPPLQRAPSAPQASPASSAPRARKRPPPQSPSPSSTSGKRVPTAVCSN
CGKAVANNGANFRRHETACRRSRAPVVGVARDEELLHTVQRLHNSISSLD
VSARVCLRDALLSLSNKAANPTATPTPQQEAMNRAAEYLVLRMLFLSGAQ
LLMHTAPGTAPPYPSTSSHVAPEMQPLAGQGDGDAQAAATAAAAAAAAAA
AATAAAAAAQGAVESHAPSPSPPAPTAVTPPSQQQPQQQQLLAGAAQAGV
SQAVKEHKTAHAP*
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mRNA from alignment at tig00004378_pilon:180796..181887-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3447.t1 ID=Gchil3447.t1|Name=Gchil3447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004378_pilon:180796..181887- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGACGCGCCGCGCGACTCTGGCGTGTTCGGCTCGCTGGACTCGCT
GGAGCCCGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGCGCCCG
AGCCCGCCGACTGGGCGCTAGACCCGCTGGCGCCCGACTTGTACCCGCTG
GCGTATATGGACGCGCCGTCGCTGCCTGCCAGCGCGCCGCCCGCGTCGCC
ATCACGCGCGCCGCATCCGCCCGAACAACCCCCCCCACCGCCCGAGCCAT
CTCCGCCGTCGTCGCCGCCACCACCACCACCACCACCTCCTCCTCCGCCT
CCTCCGCCACCGCCTCTGCAGCGCGCGCCGTCCGCACCGCAAGCATCACC
CGCTTCTTCCGCACCGCGAGCGCGAAAGCGTCCGCCCCCGCAGTCGCCAT
CGCCGTCGTCCACTTCAGGTAAAAGGGTGCCCACCGCGGTGTGCTCCAAC
TGCGGCAAGGCGGTGGCCAACAACGGCGCCAACTTCCGGCGCCACGAGAC
GGCATGCAGACGATCGCGCGCGCCTGTGGTCGGCGTGGCGCGCGACGAGG
AGCTGTTACACACCGTGCAGCGGCTGCACAACAGCATCTCGTCGCTTGAT
GTGTCGGCACGCGTATGTCTGCGCGACGCGCTGCTGTCACTCAGTAACAA
GGCTGCCAATCCAACCGCCACGCCCACGCCGCAGCAGGAGGCTATGAACC
GCGCTGCCGAGTATTTGGTGTTGCGTATGCTCTTCTTGTCGGGCGCGCAA
CTTCTCATGCATACTGCGCCTGGCACCGCGCCGCCTTACCCCTCGACGTC
GTCGCATGTAGCGCCCGAGATGCAGCCACTGGCGGGACAGGGCGACGGCG
ACGCGCAGGCTGCTGCGACAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCG
GCAGCAACGGCAGCAGCAGCTGCGGCGCAGGGCGCCGTGGAGTCGCACGC
ACCGTCACCGTCACCGCCGGCGCCGACGGCGGTGACACCGCCGTCGCAGC
AACAGCCACAACAGCAGCAGCTGCTGGCTGGCGCCGCACAAGCGGGAGTG
TCACAGGCGGTCAAGGAGCACAAGACAGCACACGCTCCATAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:180796..181887-

>Gchil3447.t1 ID=Gchil3447.t1|Name=Gchil3447.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00004378_pilon:180796..181887- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGACGCGCCGCGCGACTCTGGCGTGTTCGGCTCGCTGGACTCGCT
GGAGCCCGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGCGCCCG
AGCCCGCCGACTGGGCGCTAGACCCGCTGGCGCCCGACTTGTACCCGCTG
GCGTATATGGACGCGCCGTCGCTGCCTGCCAGCGCGCCGCCCGCGTCGCC
ATCACGCGCGCCGCATCCGCCCGAACAACCCCCCCCACCGCCCGAGCCAT
CTCCGCCGTCGTCGCCGCCACCACCACCACCACCACCTCCTCCTCCGCCT
CCTCCGCCACCGCCTCTGCAGCGCGCGCCGTCCGCACCGCAAGCATCACC
CGCTTCTTCCGCACCGCGAGCGCGAAAGCGTCCGCCCCCGCAGTCGCCAT
CGCCGTCGTCCACTTCAGGTAAAAGGGTGCCCACCGCGGTGTGCTCCAAC
TGCGGCAAGGCGGTGGCCAACAACGGCGCCAACTTCCGGCGCCACGAGAC
GGCATGCAGACGATCGCGCGCGCCTGTGGTCGGCGTGGCGCGCGACGAGG
AGCTGTTACACACCGTGCAGCGGCTGCACAACAGCATCTCGTCGCTTGAT
GTGTCGGCACGCGTATGTCTGCGCGACGCGCTGCTGTCACTCAGTAACAA
GGCTGCCAATCCAACCGCCACGCCCACGCCGCAGCAGGAGGCTATGAACC
GCGCTGCCGAGTATTTGGTGTTGCGTATGCTCTTCTTGTCGGGCGCGCAA
CTTCTCATGCATACTGCGCCTGGCACCGCGCCGCCTTACCCCTCGACGTC
GTCGCATGTAGCGCCCGAGATGCAGCCACTGGCGGGACAGGGCGACGGCG
ACGCGCAGGCTGCTGCGACAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCG
GCAGCAACGGCAGCAGCAGCTGCGGCGCAGGGCGCCGTGGAGTCGCACGC
ACCGTCACCGTCACCGCCGGCGCCGACGGCGGTGACACCGCCGTCGCAGC
AACAGCCACAACAGCAGCAGCTGCTGGCTGGCGCCGCACAAGCGGGAGTG
TCACAGGCGGTCAAGGAGCACAAGACAGCACACGCTCCATAG
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