Gchil3439.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3439.t1
Unique NameGchil3439.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length563
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:141816..143504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G909
PFAMstRNA-synt_1c
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01885,ko:K09698,ko:K18752
KEGG TC1.I.1
KEGG ReactionR03651,R05578
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006424,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0035670,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:0090567,GO:0099402,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue1.03e-208
EggNOG OGsCOG0008@1|root,KOG1149@2759|Eukaryota
EC6.1.1.17,6.1.1.24
Descriptionglutamyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03009,ko03016,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3439Gchil3439Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 141816..143504 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3439.t1.stop1Gchil3439.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 141816..141818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3439.t1.CDS1Gchil3439.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 141816..143504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3439.t1.exon1Gchil3439.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 141816..143504 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3439.t1.start1Gchil3439.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 143502..143504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3439.t1Gchil3439.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 141816..143504 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3439.t1 ID=Gchil3439.t1|Name=Gchil3439.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=563bp
MKLQSTRVAFATSTFLSSQRVGNFLTRFRPVVSGRSPIPRAAYSSTATAA
APAKTLRVRFAPSPTGALHVGGARTALYNWLLARQQNGSFLLRVEDTDLA
RSTRESEDMVLRDLRWLGLVWDEGPDIGGECGPYRQSERGELYNQLAEKL
VREGKAYPCFCTEEELDRKRLEAEAQGRPPQYDGTWRDANPEEVKIRIER
GDQYTVRFRVPDGSRVIIEDAIRGKVAWDANSTVGDFILLRSNGVPVYNF
CVAVDDALMGISTVIRAEEHLTNTLRQVLILRALGFEAPQYAHCSLILGA
DRSKLSKRHGATSVTQFREEGYLPVAMINYLATLGWNDGTEKEIYTVDEL
VEAFDINRITKSPAMFDGDKLRFINGQHLRALAQEDIETLVIQEWKRSRA
FTDVIEPGTDLGSAATALVKGSLELVNDANREILNVFSYPLEETIASGEA
DELLAEEGGFLELGKIALRDYDTGNMPAGTDEDHPALWKKWVKAVGKETK
RKGKRLFHPLRLALTGKMSGPDVGEILRVLHLTETSNASSSLVPLSKRMQ
LLRYHLEETRVK*
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spliced messenger RNA

>Gchil3439.t1 ID=Gchil3439.t1|Name=Gchil3439.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00004378_pilon:141816..143504- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCCAATCTACTCGAGTCGCTTTTGCGACTTCCACTTTCCTTTC
GTCTCAGCGTGTAGGTAACTTCCTGACACGTTTTCGTCCGGTCGTAAGCG
GTCGATCGCCTATTCCTCGTGCCGCTTATTCGTCTACTGCCACAGCCGCT
GCGCCTGCCAAGACCTTGCGAGTACGCTTTGCGCCATCTCCAACCGGCGC
CCTCCATGTCGGTGGAGCACGCACAGCGCTGTACAATTGGCTACTGGCCC
GTCAGCAGAATGGTTCATTTCTCTTACGCGTTGAGGACACGGATTTGGCG
CGATCCACACGAGAATCAGAAGACATGGTTCTACGCGACTTGCGTTGGCT
AGGTCTAGTCTGGGATGAGGGACCGGATATTGGCGGTGAATGTGGTCCTT
ATCGACAAAGTGAGCGCGGCGAATTGTACAATCAACTTGCCGAGAAACTA
GTAAGGGAGGGCAAGGCTTATCCTTGTTTTTGCACAGAAGAGGAACTAGA
CCGTAAGCGATTAGAAGCTGAAGCTCAGGGGCGCCCACCTCAATATGACG
GTACTTGGAGAGATGCAAATCCAGAGGAGGTTAAAATAAGGATTGAAAGA
GGAGACCAGTACACAGTCCGATTCAGGGTACCAGACGGTAGTCGCGTCAT
AATTGAGGATGCCATACGAGGCAAAGTCGCATGGGATGCAAACTCTACCG
TAGGAGATTTTATTTTGTTGAGAAGCAACGGAGTCCCAGTTTACAACTTC
TGCGTTGCAGTCGATGATGCGCTCATGGGAATATCAACTGTGATTCGGGC
TGAAGAACATTTGACAAACACTCTACGGCAGGTACTTATTCTTCGGGCTC
TGGGTTTTGAAGCTCCTCAGTATGCTCATTGCTCTCTCATTCTAGGCGCC
GATCGCAGTAAGCTTTCTAAAAGACATGGTGCAACCAGCGTCACTCAGTT
TAGGGAGGAGGGATACCTACCAGTTGCTATGATAAACTATCTTGCCACTC
TAGGATGGAATGATGGAACAGAGAAGGAAATATACACAGTTGATGAACTT
GTTGAAGCATTTGATATCAATCGTATTACCAAGTCGCCGGCTATGTTCGA
TGGAGACAAACTGCGATTCATAAATGGTCAGCATTTACGCGCATTGGCCC
AAGAGGATATTGAAACTCTGGTTATTCAAGAGTGGAAGCGATCCAGAGCG
TTCACAGATGTCATAGAGCCTGGTACCGATTTAGGTAGCGCAGCTACGGC
ATTGGTGAAAGGCTCTCTTGAATTGGTCAATGATGCCAACAGGGAAATTC
TGAACGTGTTCAGCTATCCACTAGAAGAAACAATTGCGTCTGGCGAGGCT
GATGAGCTTTTGGCTGAAGAAGGTGGCTTCCTTGAGCTCGGTAAAATCGC
GCTTCGGGATTATGACACGGGTAATATGCCTGCGGGTACGGACGAGGACC
ATCCAGCGCTATGGAAGAAGTGGGTAAAAGCCGTTGGGAAAGAAACAAAG
AGGAAGGGGAAACGACTGTTTCATCCCTTGCGATTAGCTTTGACTGGCAA
AATGAGCGGCCCGGATGTAGGCGAAATTCTCAGAGTTTTGCACTTGACCG
AGACGAGTAACGCATCATCGTCATTGGTCCCTCTTTCAAAAAGAATGCAG
TTACTTCGATACCATCTTGAAGAAACTCGGGTGAAGTAA
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protein sequence of Gchil3439.t1

>Gchil3439.t1 ID=Gchil3439.t1|Name=Gchil3439.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=563bp
MKLQSTRVAFATSTFLSSQRVGNFLTRFRPVVSGRSPIPRAAYSSTATAA
APAKTLRVRFAPSPTGALHVGGARTALYNWLLARQQNGSFLLRVEDTDLA
RSTRESEDMVLRDLRWLGLVWDEGPDIGGECGPYRQSERGELYNQLAEKL
VREGKAYPCFCTEEELDRKRLEAEAQGRPPQYDGTWRDANPEEVKIRIER
GDQYTVRFRVPDGSRVIIEDAIRGKVAWDANSTVGDFILLRSNGVPVYNF
CVAVDDALMGISTVIRAEEHLTNTLRQVLILRALGFEAPQYAHCSLILGA
DRSKLSKRHGATSVTQFREEGYLPVAMINYLATLGWNDGTEKEIYTVDEL
VEAFDINRITKSPAMFDGDKLRFINGQHLRALAQEDIETLVIQEWKRSRA
FTDVIEPGTDLGSAATALVKGSLELVNDANREILNVFSYPLEETIASGEA
DELLAEEGGFLELGKIALRDYDTGNMPAGTDEDHPALWKKWVKAVGKETK
RKGKRLFHPLRLALTGKMSGPDVGEILRVLHLTETSNASSSLVPLSKRMQ
LLRYHLEETRVK*
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mRNA from alignment at tig00004378_pilon:141816..143504-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3439.t1 ID=Gchil3439.t1|Name=Gchil3439.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00004378_pilon:141816..143504- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTCCAATCTACTCGAGTCGCTTTTGCGACTTCCACTTTCCTTTC
GTCTCAGCGTGTAGGTAACTTCCTGACACGTTTTCGTCCGGTCGTAAGCG
GTCGATCGCCTATTCCTCGTGCCGCTTATTCGTCTACTGCCACAGCCGCT
GCGCCTGCCAAGACCTTGCGAGTACGCTTTGCGCCATCTCCAACCGGCGC
CCTCCATGTCGGTGGAGCACGCACAGCGCTGTACAATTGGCTACTGGCCC
GTCAGCAGAATGGTTCATTTCTCTTACGCGTTGAGGACACGGATTTGGCG
CGATCCACACGAGAATCAGAAGACATGGTTCTACGCGACTTGCGTTGGCT
AGGTCTAGTCTGGGATGAGGGACCGGATATTGGCGGTGAATGTGGTCCTT
ATCGACAAAGTGAGCGCGGCGAATTGTACAATCAACTTGCCGAGAAACTA
GTAAGGGAGGGCAAGGCTTATCCTTGTTTTTGCACAGAAGAGGAACTAGA
CCGTAAGCGATTAGAAGCTGAAGCTCAGGGGCGCCCACCTCAATATGACG
GTACTTGGAGAGATGCAAATCCAGAGGAGGTTAAAATAAGGATTGAAAGA
GGAGACCAGTACACAGTCCGATTCAGGGTACCAGACGGTAGTCGCGTCAT
AATTGAGGATGCCATACGAGGCAAAGTCGCATGGGATGCAAACTCTACCG
TAGGAGATTTTATTTTGTTGAGAAGCAACGGAGTCCCAGTTTACAACTTC
TGCGTTGCAGTCGATGATGCGCTCATGGGAATATCAACTGTGATTCGGGC
TGAAGAACATTTGACAAACACTCTACGGCAGGTACTTATTCTTCGGGCTC
TGGGTTTTGAAGCTCCTCAGTATGCTCATTGCTCTCTCATTCTAGGCGCC
GATCGCAGTAAGCTTTCTAAAAGACATGGTGCAACCAGCGTCACTCAGTT
TAGGGAGGAGGGATACCTACCAGTTGCTATGATAAACTATCTTGCCACTC
TAGGATGGAATGATGGAACAGAGAAGGAAATATACACAGTTGATGAACTT
GTTGAAGCATTTGATATCAATCGTATTACCAAGTCGCCGGCTATGTTCGA
TGGAGACAAACTGCGATTCATAAATGGTCAGCATTTACGCGCATTGGCCC
AAGAGGATATTGAAACTCTGGTTATTCAAGAGTGGAAGCGATCCAGAGCG
TTCACAGATGTCATAGAGCCTGGTACCGATTTAGGTAGCGCAGCTACGGC
ATTGGTGAAAGGCTCTCTTGAATTGGTCAATGATGCCAACAGGGAAATTC
TGAACGTGTTCAGCTATCCACTAGAAGAAACAATTGCGTCTGGCGAGGCT
GATGAGCTTTTGGCTGAAGAAGGTGGCTTCCTTGAGCTCGGTAAAATCGC
GCTTCGGGATTATGACACGGGTAATATGCCTGCGGGTACGGACGAGGACC
ATCCAGCGCTATGGAAGAAGTGGGTAAAAGCCGTTGGGAAAGAAACAAAG
AGGAAGGGGAAACGACTGTTTCATCCCTTGCGATTAGCTTTGACTGGCAA
AATGAGCGGCCCGGATGTAGGCGAAATTCTCAGAGTTTTGCACTTGACCG
AGACGAGTAACGCATCATCGTCATTGGTCCCTCTTTCAAAAAGAATGCAG
TTACTTCGATACCATCTTGAAGAAACTCGGGTGAAGTAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:141816..143504-

>Gchil3439.t1 ID=Gchil3439.t1|Name=Gchil3439.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00004378_pilon:141816..143504- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTCCAATCTACTCGAGTCGCTTTTGCGACTTCCACTTTCCTTTC
GTCTCAGCGTGTAGGTAACTTCCTGACACGTTTTCGTCCGGTCGTAAGCG
GTCGATCGCCTATTCCTCGTGCCGCTTATTCGTCTACTGCCACAGCCGCT
GCGCCTGCCAAGACCTTGCGAGTACGCTTTGCGCCATCTCCAACCGGCGC
CCTCCATGTCGGTGGAGCACGCACAGCGCTGTACAATTGGCTACTGGCCC
GTCAGCAGAATGGTTCATTTCTCTTACGCGTTGAGGACACGGATTTGGCG
CGATCCACACGAGAATCAGAAGACATGGTTCTACGCGACTTGCGTTGGCT
AGGTCTAGTCTGGGATGAGGGACCGGATATTGGCGGTGAATGTGGTCCTT
ATCGACAAAGTGAGCGCGGCGAATTGTACAATCAACTTGCCGAGAAACTA
GTAAGGGAGGGCAAGGCTTATCCTTGTTTTTGCACAGAAGAGGAACTAGA
CCGTAAGCGATTAGAAGCTGAAGCTCAGGGGCGCCCACCTCAATATGACG
GTACTTGGAGAGATGCAAATCCAGAGGAGGTTAAAATAAGGATTGAAAGA
GGAGACCAGTACACAGTCCGATTCAGGGTACCAGACGGTAGTCGCGTCAT
AATTGAGGATGCCATACGAGGCAAAGTCGCATGGGATGCAAACTCTACCG
TAGGAGATTTTATTTTGTTGAGAAGCAACGGAGTCCCAGTTTACAACTTC
TGCGTTGCAGTCGATGATGCGCTCATGGGAATATCAACTGTGATTCGGGC
TGAAGAACATTTGACAAACACTCTACGGCAGGTACTTATTCTTCGGGCTC
TGGGTTTTGAAGCTCCTCAGTATGCTCATTGCTCTCTCATTCTAGGCGCC
GATCGCAGTAAGCTTTCTAAAAGACATGGTGCAACCAGCGTCACTCAGTT
TAGGGAGGAGGGATACCTACCAGTTGCTATGATAAACTATCTTGCCACTC
TAGGATGGAATGATGGAACAGAGAAGGAAATATACACAGTTGATGAACTT
GTTGAAGCATTTGATATCAATCGTATTACCAAGTCGCCGGCTATGTTCGA
TGGAGACAAACTGCGATTCATAAATGGTCAGCATTTACGCGCATTGGCCC
AAGAGGATATTGAAACTCTGGTTATTCAAGAGTGGAAGCGATCCAGAGCG
TTCACAGATGTCATAGAGCCTGGTACCGATTTAGGTAGCGCAGCTACGGC
ATTGGTGAAAGGCTCTCTTGAATTGGTCAATGATGCCAACAGGGAAATTC
TGAACGTGTTCAGCTATCCACTAGAAGAAACAATTGCGTCTGGCGAGGCT
GATGAGCTTTTGGCTGAAGAAGGTGGCTTCCTTGAGCTCGGTAAAATCGC
GCTTCGGGATTATGACACGGGTAATATGCCTGCGGGTACGGACGAGGACC
ATCCAGCGCTATGGAAGAAGTGGGTAAAAGCCGTTGGGAAAGAAACAAAG
AGGAAGGGGAAACGACTGTTTCATCCCTTGCGATTAGCTTTGACTGGCAA
AATGAGCGGCCCGGATGTAGGCGAAATTCTCAGAGTTTTGCACTTGACCG
AGACGAGTAACGCATCATCGTCATTGGTCCCTCTTTCAAAAAGAATGCAG
TTACTTCGATACCATCTTGAAGAAACTCGGGTGAAGTAA
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