Gchil3414.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3414.t1
Unique Name	Gchil3414.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	298

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000168_pilon	contig	tig00000168_pilon:1061866..1062759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705214.1
PFAMs	Diphthami_syn_2,Ribonuc_L-PSP
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00358,RC03275,RC03354
KEGG ko	ko:K06927,ko:K09022
KEGG Reaction	R03613,R11098,R11099
Evalue	2.49e-78
EggNOG OGs	COG0251@1\|root,KOG2317@2759\|Eukaryota
EC	3.5.99.10,6.3.1.14
Description	endoribonuclease L-PSP
COG category	J
BRITE	ko00000,ko01000,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3414	Gchil3414	Gracilaria chilensis NLEC103_M9 male	gene	tig00000168_pilon 1061866..1062759 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3414.t1.start1	Gchil3414.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000168_pilon 1061866..1061868 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3414.t1.CDS1	Gchil3414.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000168_pilon 1061866..1062759 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3414.t1.exon1	Gchil3414.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000168_pilon 1061866..1062759 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3414.t1.stop1	Gchil3414.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000168_pilon 1062757..1062759 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3414.t1	Gchil3414.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000168_pilon 1061866..1062759 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000168_pilon:1061866..1062759+
coding sequence from alignment at tig00000168_pilon:1061866..1062759+

mRNA sequence

>Gchil3414.t1 ID=Gchil3414.t1|Name=Gchil3414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MENTACTFVSSFIPNIAYRVCQFSGSSPKIPQHSSVQSPRIAVVMTGNLS
RNSDIKRFLPGPRFNQIVVHKGVVYLAGQVARGTGGSVADQTRAILAKID
SLLEQAGTDKSRLLTTNIWIADMSKFSEMNTEWEKWVDKDNMPVRACVQS
TLVDDSITVEIQATAALQSPAKIINTEDAAAAVGPYNQGVVVNDGTVYVS
GCIGLLPRTAVMAGDSVEEQTKQALQNLKAIVEAAGATVHDIVKTSILLD
DIADFAAVNSIYSKFFEGGPVPARSCFAAKQLPKAALVEIEAVAKLQ*

spliced messenger RNA

>Gchil3414.t1 ID=Gchil3414.t1|Name=Gchil3414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000168_pilon:1061866..1062759+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAATACCGCTTGCACGTTCGTATCATCTTTCATCCCAAACATAGC
ATATCGAGTCTGTCAGTTTTCCGGCTCATCGCCAAAGATACCCCAGCATT
CTTCTGTCCAGTCGCCAAGAATCGCAGTTGTAATGACTGGTAACCTTAGT
CGAAATTCCGATATCAAGCGCTTTCTCCCTGGACCCCGTTTTAATCAGAT
CGTTGTTCATAAGGGAGTCGTTTATTTAGCTGGACAAGTTGCTCGTGGGA
CAGGCGGTTCTGTTGCAGATCAAACACGAGCAATTCTCGCAAAGATTGAC
AGTCTACTCGAGCAAGCTGGCACCGACAAGTCTCGCTTGCTTACGACGAA
CATCTGGATCGCAGATATGTCAAAGTTTTCGGAGATGAATACAGAATGGG
AGAAGTGGGTCGACAAAGATAATATGCCTGTTCGTGCATGTGTTCAGTCC
ACTCTTGTTGACGACTCTATCACCGTGGAGATTCAGGCCACTGCTGCATT
ACAATCGCCTGCAAAGATCATCAACACTGAAGATGCGGCGGCCGCCGTCG
GACCTTACAATCAAGGAGTTGTGGTTAATGATGGTACTGTTTACGTTAGT
GGCTGCATCGGCCTCTTGCCACGCACTGCGGTCATGGCAGGCGATTCCGT
TGAAGAGCAAACGAAGCAAGCTCTTCAGAACCTGAAAGCTATTGTTGAAG
CCGCAGGCGCTACTGTGCACGATATCGTTAAGACATCCATACTGCTGGAT
GACATTGCTGATTTTGCAGCTGTGAATTCCATATACTCTAAGTTCTTTGA
AGGAGGCCCGGTACCGGCACGCTCCTGCTTTGCTGCCAAGCAACTGCCCA
AAGCAGCTTTAGTAGAAATTGAAGCTGTAGCAAAGTTGCAGTAA

protein sequence of Gchil3414.t1

>Gchil3414.t1 ID=Gchil3414.t1|Name=Gchil3414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MENTACTFVSSFIPNIAYRVCQFSGSSPKIPQHSSVQSPRIAVVMTGNLS
RNSDIKRFLPGPRFNQIVVHKGVVYLAGQVARGTGGSVADQTRAILAKID
SLLEQAGTDKSRLLTTNIWIADMSKFSEMNTEWEKWVDKDNMPVRACVQS
TLVDDSITVEIQATAALQSPAKIINTEDAAAAVGPYNQGVVVNDGTVYVS
GCIGLLPRTAVMAGDSVEEQTKQALQNLKAIVEAAGATVHDIVKTSILLD
DIADFAAVNSIYSKFFEGGPVPARSCFAAKQLPKAALVEIEAVAKLQ*

mRNA from alignment at tig00000168_pilon:1061866..1062759+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3414.t1 ID=Gchil3414.t1|Name=Gchil3414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000168_pilon:1061866..1062759+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAATACCGCTTGCACGTTCGTATCATCTTTCATCCCAAACATAGC
ATATCGAGTCTGTCAGTTTTCCGGCTCATCGCCAAAGATACCCCAGCATT
CTTCTGTCCAGTCGCCAAGAATCGCAGTTGTAATGACTGGTAACCTTAGT
CGAAATTCCGATATCAAGCGCTTTCTCCCTGGACCCCGTTTTAATCAGAT
CGTTGTTCATAAGGGAGTCGTTTATTTAGCTGGACAAGTTGCTCGTGGGA
CAGGCGGTTCTGTTGCAGATCAAACACGAGCAATTCTCGCAAAGATTGAC
AGTCTACTCGAGCAAGCTGGCACCGACAAGTCTCGCTTGCTTACGACGAA
CATCTGGATCGCAGATATGTCAAAGTTTTCGGAGATGAATACAGAATGGG
AGAAGTGGGTCGACAAAGATAATATGCCTGTTCGTGCATGTGTTCAGTCC
ACTCTTGTTGACGACTCTATCACCGTGGAGATTCAGGCCACTGCTGCATT
ACAATCGCCTGCAAAGATCATCAACACTGAAGATGCGGCGGCCGCCGTCG
GACCTTACAATCAAGGAGTTGTGGTTAATGATGGTACTGTTTACGTTAGT
GGCTGCATCGGCCTCTTGCCACGCACTGCGGTCATGGCAGGCGATTCCGT
TGAAGAGCAAACGAAGCAAGCTCTTCAGAACCTGAAAGCTATTGTTGAAG
CCGCAGGCGCTACTGTGCACGATATCGTTAAGACATCCATACTGCTGGAT
GACATTGCTGATTTTGCAGCTGTGAATTCCATATACTCTAAGTTCTTTGA
AGGAGGCCCGGTACCGGCACGCTCCTGCTTTGCTGCCAAGCAACTGCCCA
AAGCAGCTTTAGTAGAAATTGAAGCTGTAGCAAAGTTGCAGTAA

Coding sequence (CDS) from alignment at tig00000168_pilon:1061866..1062759+

>Gchil3414.t1 ID=Gchil3414.t1|Name=Gchil3414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000168_pilon:1061866..1062759+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAATACCGCTTGCACGTTCGTATCATCTTTCATCCCAAACATAGC
ATATCGAGTCTGTCAGTTTTCCGGCTCATCGCCAAAGATACCCCAGCATT
CTTCTGTCCAGTCGCCAAGAATCGCAGTTGTAATGACTGGTAACCTTAGT
CGAAATTCCGATATCAAGCGCTTTCTCCCTGGACCCCGTTTTAATCAGAT
CGTTGTTCATAAGGGAGTCGTTTATTTAGCTGGACAAGTTGCTCGTGGGA
CAGGCGGTTCTGTTGCAGATCAAACACGAGCAATTCTCGCAAAGATTGAC
AGTCTACTCGAGCAAGCTGGCACCGACAAGTCTCGCTTGCTTACGACGAA
CATCTGGATCGCAGATATGTCAAAGTTTTCGGAGATGAATACAGAATGGG
AGAAGTGGGTCGACAAAGATAATATGCCTGTTCGTGCATGTGTTCAGTCC
ACTCTTGTTGACGACTCTATCACCGTGGAGATTCAGGCCACTGCTGCATT
ACAATCGCCTGCAAAGATCATCAACACTGAAGATGCGGCGGCCGCCGTCG
GACCTTACAATCAAGGAGTTGTGGTTAATGATGGTACTGTTTACGTTAGT
GGCTGCATCGGCCTCTTGCCACGCACTGCGGTCATGGCAGGCGATTCCGT
TGAAGAGCAAACGAAGCAAGCTCTTCAGAACCTGAAAGCTATTGTTGAAG
CCGCAGGCGCTACTGTGCACGATATCGTTAAGACATCCATACTGCTGGAT
GACATTGCTGATTTTGCAGCTGTGAATTCCATATACTCTAAGTTCTTTGA
AGGAGGCCCGGTACCGGCACGCTCCTGCTTTGCTGCCAAGCAACTGCCCA
AAGCAGCTTTAGTAGAAATTGAAGCTGTAGCAAAGTTGCAGTAA