Gchil3240.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3240.t1
Unique NameGchil3240.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1212560..1213396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707085.1
Preferred nameC15orf41
PFAMsTPD
Max annot lvl2759|Eukaryota
Evalue2.17e-64
EggNOG OGsarCOG04990@1|root,2R9SY@2759|Eukaryota
DescriptionProtein of unknown function TPD sequence-motif
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3240Gchil3240Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1212560..1213396 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3240.t1.stop1Gchil3240.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1212560..1212562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3240.t1.CDS1Gchil3240.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1212560..1213396 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3240.t1.exon1Gchil3240.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1212560..1213396 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3240.t1.start1Gchil3240.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1213394..1213396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3240.t1Gchil3240.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1212560..1213396 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3240.t1 ID=Gchil3240.t1|Name=Gchil3240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MLASEWMRICSLLRCKEDISTLAKAQPDIGYDTISLIYDQLYARQVAKTF
YLVRMHSKAFVEMFKSGLSLMEISERFNLSPSLVARKVLELHLDLNRKSI
TQFMRDPSNITDERLRDDVELCVEMDEHCSPRMDRLRTALGLEYELRLIH
EVMNLGLEFETENDLRKRGCHKTPDILLYVPVLFRNKVVRWIDSKAKFGD
EYTLNKDYVSSVSSYLGRFGPGMVIYWFGFIEDCNSRMLLDNGLLITGSF
PADVGMLPGSNIFLACKEDDEANESEDE*
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spliced messenger RNA

>Gchil3240.t1 ID=Gchil3240.t1|Name=Gchil3240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004382_pilon:1212560..1213396- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCATCAGAATGGATGCGAATCTGTTCTTTGCTTCGTTGCAAGGA
AGACATATCTACATTGGCCAAAGCACAACCGGACATCGGCTATGACACGA
TTTCACTCATTTATGACCAGCTCTACGCTCGCCAAGTTGCGAAAACGTTT
TATCTAGTTCGAATGCATAGCAAAGCATTTGTCGAAATGTTCAAGTCTGG
ACTATCGTTGATGGAGATTTCTGAGAGGTTCAATCTGTCTCCCAGCTTAG
TTGCAAGAAAAGTGTTGGAGCTCCATCTGGATTTGAATCGAAAATCAATA
ACGCAGTTTATGCGTGATCCATCAAATATCACGGACGAGCGCTTACGAGA
CGATGTGGAATTATGTGTAGAAATGGACGAACACTGCAGTCCAAGGATGG
ATCGATTGAGAACTGCTCTCGGGCTTGAGTATGAACTCCGACTCATACAC
GAGGTGATGAATCTTGGTCTTGAGTTCGAAACTGAGAATGACCTGCGGAA
ACGAGGATGTCACAAAACTCCCGACATTTTGCTCTACGTTCCTGTTTTGT
TCCGCAACAAGGTGGTTCGATGGATTGACAGTAAGGCGAAGTTTGGGGAC
GAGTATACTTTGAATAAGGATTATGTTTCGTCTGTGAGTTCTTATCTTGG
AAGGTTTGGCCCAGGGATGGTTATATATTGGTTCGGGTTTATTGAAGACT
GCAACTCTCGAATGTTGCTTGACAACGGGCTCCTGATAACAGGTAGTTTT
CCAGCTGATGTTGGCATGCTTCCCGGTAGCAATATATTCTTAGCTTGCAA
GGAAGACGACGAAGCAAACGAAAGTGAAGACGAATAA
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protein sequence of Gchil3240.t1

>Gchil3240.t1 ID=Gchil3240.t1|Name=Gchil3240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MLASEWMRICSLLRCKEDISTLAKAQPDIGYDTISLIYDQLYARQVAKTF
YLVRMHSKAFVEMFKSGLSLMEISERFNLSPSLVARKVLELHLDLNRKSI
TQFMRDPSNITDERLRDDVELCVEMDEHCSPRMDRLRTALGLEYELRLIH
EVMNLGLEFETENDLRKRGCHKTPDILLYVPVLFRNKVVRWIDSKAKFGD
EYTLNKDYVSSVSSYLGRFGPGMVIYWFGFIEDCNSRMLLDNGLLITGSF
PADVGMLPGSNIFLACKEDDEANESEDE*
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mRNA from alignment at tig00004382_pilon:1212560..1213396-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3240.t1 ID=Gchil3240.t1|Name=Gchil3240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004382_pilon:1212560..1213396- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGCATCAGAATGGATGCGAATCTGTTCTTTGCTTCGTTGCAAGGA
AGACATATCTACATTGGCCAAAGCACAACCGGACATCGGCTATGACACGA
TTTCACTCATTTATGACCAGCTCTACGCTCGCCAAGTTGCGAAAACGTTT
TATCTAGTTCGAATGCATAGCAAAGCATTTGTCGAAATGTTCAAGTCTGG
ACTATCGTTGATGGAGATTTCTGAGAGGTTCAATCTGTCTCCCAGCTTAG
TTGCAAGAAAAGTGTTGGAGCTCCATCTGGATTTGAATCGAAAATCAATA
ACGCAGTTTATGCGTGATCCATCAAATATCACGGACGAGCGCTTACGAGA
CGATGTGGAATTATGTGTAGAAATGGACGAACACTGCAGTCCAAGGATGG
ATCGATTGAGAACTGCTCTCGGGCTTGAGTATGAACTCCGACTCATACAC
GAGGTGATGAATCTTGGTCTTGAGTTCGAAACTGAGAATGACCTGCGGAA
ACGAGGATGTCACAAAACTCCCGACATTTTGCTCTACGTTCCTGTTTTGT
TCCGCAACAAGGTGGTTCGATGGATTGACAGTAAGGCGAAGTTTGGGGAC
GAGTATACTTTGAATAAGGATTATGTTTCGTCTGTGAGTTCTTATCTTGG
AAGGTTTGGCCCAGGGATGGTTATATATTGGTTCGGGTTTATTGAAGACT
GCAACTCTCGAATGTTGCTTGACAACGGGCTCCTGATAACAGGTAGTTTT
CCAGCTGATGTTGGCATGCTTCCCGGTAGCAATATATTCTTAGCTTGCAA
GGAAGACGACGAAGCAAACGAAAGTGAAGACGAATAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1212560..1213396-

>Gchil3240.t1 ID=Gchil3240.t1|Name=Gchil3240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00004382_pilon:1212560..1213396- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGCATCAGAATGGATGCGAATCTGTTCTTTGCTTCGTTGCAAGGA
AGACATATCTACATTGGCCAAAGCACAACCGGACATCGGCTATGACACGA
TTTCACTCATTTATGACCAGCTCTACGCTCGCCAAGTTGCGAAAACGTTT
TATCTAGTTCGAATGCATAGCAAAGCATTTGTCGAAATGTTCAAGTCTGG
ACTATCGTTGATGGAGATTTCTGAGAGGTTCAATCTGTCTCCCAGCTTAG
TTGCAAGAAAAGTGTTGGAGCTCCATCTGGATTTGAATCGAAAATCAATA
ACGCAGTTTATGCGTGATCCATCAAATATCACGGACGAGCGCTTACGAGA
CGATGTGGAATTATGTGTAGAAATGGACGAACACTGCAGTCCAAGGATGG
ATCGATTGAGAACTGCTCTCGGGCTTGAGTATGAACTCCGACTCATACAC
GAGGTGATGAATCTTGGTCTTGAGTTCGAAACTGAGAATGACCTGCGGAA
ACGAGGATGTCACAAAACTCCCGACATTTTGCTCTACGTTCCTGTTTTGT
TCCGCAACAAGGTGGTTCGATGGATTGACAGTAAGGCGAAGTTTGGGGAC
GAGTATACTTTGAATAAGGATTATGTTTCGTCTGTGAGTTCTTATCTTGG
AAGGTTTGGCCCAGGGATGGTTATATATTGGTTCGGGTTTATTGAAGACT
GCAACTCTCGAATGTTGCTTGACAACGGGCTCCTGATAACAGGTAGTTTT
CCAGCTGATGTTGGCATGCTTCCCGGTAGCAATATATTCTTAGCTTGCAA
GGAAGACGACGAAGCAAACGAAAGTGAAGACGAATAA
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