Gchil3232.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3232.t1
Unique NameGchil3232.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length629
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1189496..1191382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3232Gchil3232Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1189496..1191382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3232.t1.stop1Gchil3232.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1189496..1189498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3232.t1.CDS1Gchil3232.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1189496..1191382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3232.t1.exon1Gchil3232.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1189496..1191382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3232.t1.start1Gchil3232.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1191380..1191382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3232.t1Gchil3232.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1189496..1191382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3232.t1 ID=Gchil3232.t1|Name=Gchil3232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=629bp
MFTIVNKPHFVHVCLLLYILILSPTLFPTHVTAGTVRSKPISSRNGNSPT
DNMKRMLADEAKKKKYYTTPLAIDELDSLKMVENATNSAPRNISSESSIS
VNSFERSKQERNGSIYQKQDREDSASDRNSSVVGEASKPVAVKIESQTYS
RGDRKDRGPFSVHIEDQKFYGGLITYIHHLHPARICRVLNPCIRHDGVLV
LPKWMQRHDNLLNFHCGQKKLEFSADNTSPPASMNDLDLIGLSLPRPSIP
DFVRDFLPNAIVFDLIYGDRDARTSCHSRKGSSCESFPSLNESLNTAIFL
PPRLEALEQKHSWVREFVKLMKPPNAGRQAKVLYNYPDADEDNGMKCFRS
AFFTRGPFSKYHIMSDHLQELNFLKSHGISKKARHFQQSAEHGSTNSASC
QLNITISNRKLNDDDPKQLIGRYITNIPNIRTEIVKQADRVPGLNVHVAA
ITLEGKSLWWQINAMQKTDIWVAGHGPLLTNMLFMRQNSTAIEIQPFTYY
PQVYERIAQHLAHVNYDRYIANPDEEAFEKCINQVYQSGHSSYNEVRTLH
DRYLRAAKKFFQSDSTHSLVLHTLEGRGLDYVRACARMQRLTTNGRNFAI
AIVRQARIRCGLPPPRPFESEGEVNLTI*
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spliced messenger RNA

>Gchil3232.t1 ID=Gchil3232.t1|Name=Gchil3232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00004382_pilon:1189496..1191382- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACCATTGTGAACAAGCCCCATTTTGTGCATGTATGTCTGTTATT
GTATATCCTCATCTTAAGTCCAACGCTATTTCCGACACATGTGACGGCAG
GAACTGTGCGATCCAAACCTATCTCCTCGAGAAATGGGAACAGTCCCACC
GATAATATGAAAAGAATGCTTGCAGATGAGGCAAAGAAGAAGAAATATTA
CACAACGCCACTGGCAATTGATGAGCTCGACTCGCTGAAAATGGTCGAGA
ACGCGACAAATTCTGCACCAAGAAATATCTCAAGTGAGAGTTCTATTTCA
GTCAATTCATTTGAGAGAAGTAAACAAGAACGGAATGGGAGTATTTATCA
AAAACAGGATCGAGAAGATTCAGCCAGCGATCGGAACTCATCTGTTGTTG
GAGAGGCCTCCAAACCAGTTGCAGTCAAGATTGAATCCCAAACGTATTCC
AGGGGTGATCGAAAGGACCGCGGGCCATTTTCAGTCCATATCGAAGATCA
GAAGTTTTACGGAGGGTTAATAACCTACATACATCATCTTCATCCAGCCC
GCATTTGTCGAGTTTTGAATCCATGTATTCGACACGATGGAGTCTTGGTT
CTTCCGAAGTGGATGCAAAGGCATGATAACTTACTTAACTTTCACTGTGG
TCAGAAGAAACTTGAGTTTTCCGCAGATAATACCAGCCCACCAGCCTCTA
TGAATGATCTAGATCTCATCGGTTTATCTCTTCCGCGACCCAGTATCCCT
GACTTTGTTCGAGATTTTCTGCCAAATGCAATAGTATTCGACCTTATTTA
TGGTGATCGCGATGCAAGGACATCCTGTCATTCGAGAAAGGGAAGTTCTT
GTGAATCCTTCCCGTCTTTAAATGAGAGCCTGAACACAGCCATATTTCTT
CCTCCAAGGCTCGAAGCACTGGAGCAGAAGCACTCCTGGGTGCGAGAGTT
TGTGAAGTTGATGAAGCCTCCAAATGCTGGAAGACAAGCAAAAGTTTTGT
ATAATTACCCAGATGCTGATGAGGATAATGGTATGAAATGTTTCCGTTCT
GCTTTTTTCACGAGAGGACCGTTTAGCAAGTATCACATCATGAGTGATCA
TCTCCAGGAATTAAACTTTCTAAAAAGTCACGGCATAAGCAAAAAAGCGC
GACATTTCCAACAAAGTGCTGAACATGGATCTACAAATTCGGCTTCATGC
CAACTCAACATTACAATATCAAATCGGAAGTTAAACGATGACGACCCGAA
ACAACTCATTGGAAGATATATTACCAACATACCCAACATTCGAACTGAGA
TAGTGAAGCAAGCAGATCGAGTTCCTGGTTTGAATGTTCATGTAGCTGCA
ATCACTTTGGAGGGGAAGAGTTTATGGTGGCAAATCAATGCTATGCAAAA
GACGGATATCTGGGTTGCAGGACATGGCCCGTTGTTGACAAACATGCTTT
TCATGCGACAAAATTCCACAGCCATTGAAATACAACCCTTTACGTATTAC
CCGCAAGTATATGAAAGAATAGCTCAACATCTGGCTCACGTGAATTATGA
TCGCTACATAGCCAATCCCGATGAAGAGGCCTTCGAGAAATGCATCAATC
AAGTTTATCAATCGGGCCACAGTTCGTATAATGAAGTAAGAACTCTGCAC
GACAGGTATCTTCGAGCTGCGAAGAAATTCTTTCAGAGCGATAGCACTCA
CTCACTTGTTTTGCATACCCTAGAAGGCCGAGGTCTTGACTATGTGAGGG
CTTGTGCACGGATGCAACGTTTGACAACAAATGGTCGAAACTTTGCCATT
GCCATTGTGCGCCAGGCGCGTATTCGGTGTGGTTTACCCCCGCCAAGACC
TTTCGAAAGTGAAGGTGAGGTGAATCTTACTATATAG
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protein sequence of Gchil3232.t1

>Gchil3232.t1 ID=Gchil3232.t1|Name=Gchil3232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=629bp
MFTIVNKPHFVHVCLLLYILILSPTLFPTHVTAGTVRSKPISSRNGNSPT
DNMKRMLADEAKKKKYYTTPLAIDELDSLKMVENATNSAPRNISSESSIS
VNSFERSKQERNGSIYQKQDREDSASDRNSSVVGEASKPVAVKIESQTYS
RGDRKDRGPFSVHIEDQKFYGGLITYIHHLHPARICRVLNPCIRHDGVLV
LPKWMQRHDNLLNFHCGQKKLEFSADNTSPPASMNDLDLIGLSLPRPSIP
DFVRDFLPNAIVFDLIYGDRDARTSCHSRKGSSCESFPSLNESLNTAIFL
PPRLEALEQKHSWVREFVKLMKPPNAGRQAKVLYNYPDADEDNGMKCFRS
AFFTRGPFSKYHIMSDHLQELNFLKSHGISKKARHFQQSAEHGSTNSASC
QLNITISNRKLNDDDPKQLIGRYITNIPNIRTEIVKQADRVPGLNVHVAA
ITLEGKSLWWQINAMQKTDIWVAGHGPLLTNMLFMRQNSTAIEIQPFTYY
PQVYERIAQHLAHVNYDRYIANPDEEAFEKCINQVYQSGHSSYNEVRTLH
DRYLRAAKKFFQSDSTHSLVLHTLEGRGLDYVRACARMQRLTTNGRNFAI
AIVRQARIRCGLPPPRPFESEGEVNLTI*
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mRNA from alignment at tig00004382_pilon:1189496..1191382-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3232.t1 ID=Gchil3232.t1|Name=Gchil3232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00004382_pilon:1189496..1191382- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTACCATTGTGAACAAGCCCCATTTTGTGCATGTATGTCTGTTATT
GTATATCCTCATCTTAAGTCCAACGCTATTTCCGACACATGTGACGGCAG
GAACTGTGCGATCCAAACCTATCTCCTCGAGAAATGGGAACAGTCCCACC
GATAATATGAAAAGAATGCTTGCAGATGAGGCAAAGAAGAAGAAATATTA
CACAACGCCACTGGCAATTGATGAGCTCGACTCGCTGAAAATGGTCGAGA
ACGCGACAAATTCTGCACCAAGAAATATCTCAAGTGAGAGTTCTATTTCA
GTCAATTCATTTGAGAGAAGTAAACAAGAACGGAATGGGAGTATTTATCA
AAAACAGGATCGAGAAGATTCAGCCAGCGATCGGAACTCATCTGTTGTTG
GAGAGGCCTCCAAACCAGTTGCAGTCAAGATTGAATCCCAAACGTATTCC
AGGGGTGATCGAAAGGACCGCGGGCCATTTTCAGTCCATATCGAAGATCA
GAAGTTTTACGGAGGGTTAATAACCTACATACATCATCTTCATCCAGCCC
GCATTTGTCGAGTTTTGAATCCATGTATTCGACACGATGGAGTCTTGGTT
CTTCCGAAGTGGATGCAAAGGCATGATAACTTACTTAACTTTCACTGTGG
TCAGAAGAAACTTGAGTTTTCCGCAGATAATACCAGCCCACCAGCCTCTA
TGAATGATCTAGATCTCATCGGTTTATCTCTTCCGCGACCCAGTATCCCT
GACTTTGTTCGAGATTTTCTGCCAAATGCAATAGTATTCGACCTTATTTA
TGGTGATCGCGATGCAAGGACATCCTGTCATTCGAGAAAGGGAAGTTCTT
GTGAATCCTTCCCGTCTTTAAATGAGAGCCTGAACACAGCCATATTTCTT
CCTCCAAGGCTCGAAGCACTGGAGCAGAAGCACTCCTGGGTGCGAGAGTT
TGTGAAGTTGATGAAGCCTCCAAATGCTGGAAGACAAGCAAAAGTTTTGT
ATAATTACCCAGATGCTGATGAGGATAATGGTATGAAATGTTTCCGTTCT
GCTTTTTTCACGAGAGGACCGTTTAGCAAGTATCACATCATGAGTGATCA
TCTCCAGGAATTAAACTTTCTAAAAAGTCACGGCATAAGCAAAAAAGCGC
GACATTTCCAACAAAGTGCTGAACATGGATCTACAAATTCGGCTTCATGC
CAACTCAACATTACAATATCAAATCGGAAGTTAAACGATGACGACCCGAA
ACAACTCATTGGAAGATATATTACCAACATACCCAACATTCGAACTGAGA
TAGTGAAGCAAGCAGATCGAGTTCCTGGTTTGAATGTTCATGTAGCTGCA
ATCACTTTGGAGGGGAAGAGTTTATGGTGGCAAATCAATGCTATGCAAAA
GACGGATATCTGGGTTGCAGGACATGGCCCGTTGTTGACAAACATGCTTT
TCATGCGACAAAATTCCACAGCCATTGAAATACAACCCTTTACGTATTAC
CCGCAAGTATATGAAAGAATAGCTCAACATCTGGCTCACGTGAATTATGA
TCGCTACATAGCCAATCCCGATGAAGAGGCCTTCGAGAAATGCATCAATC
AAGTTTATCAATCGGGCCACAGTTCGTATAATGAAGTAAGAACTCTGCAC
GACAGGTATCTTCGAGCTGCGAAGAAATTCTTTCAGAGCGATAGCACTCA
CTCACTTGTTTTGCATACCCTAGAAGGCCGAGGTCTTGACTATGTGAGGG
CTTGTGCACGGATGCAACGTTTGACAACAAATGGTCGAAACTTTGCCATT
GCCATTGTGCGCCAGGCGCGTATTCGGTGTGGTTTACCCCCGCCAAGACC
TTTCGAAAGTGAAGGTGAGGTGAATCTTACTATATAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:1189496..1191382-

>Gchil3232.t1 ID=Gchil3232.t1|Name=Gchil3232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00004382_pilon:1189496..1191382- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTACCATTGTGAACAAGCCCCATTTTGTGCATGTATGTCTGTTATT
GTATATCCTCATCTTAAGTCCAACGCTATTTCCGACACATGTGACGGCAG
GAACTGTGCGATCCAAACCTATCTCCTCGAGAAATGGGAACAGTCCCACC
GATAATATGAAAAGAATGCTTGCAGATGAGGCAAAGAAGAAGAAATATTA
CACAACGCCACTGGCAATTGATGAGCTCGACTCGCTGAAAATGGTCGAGA
ACGCGACAAATTCTGCACCAAGAAATATCTCAAGTGAGAGTTCTATTTCA
GTCAATTCATTTGAGAGAAGTAAACAAGAACGGAATGGGAGTATTTATCA
AAAACAGGATCGAGAAGATTCAGCCAGCGATCGGAACTCATCTGTTGTTG
GAGAGGCCTCCAAACCAGTTGCAGTCAAGATTGAATCCCAAACGTATTCC
AGGGGTGATCGAAAGGACCGCGGGCCATTTTCAGTCCATATCGAAGATCA
GAAGTTTTACGGAGGGTTAATAACCTACATACATCATCTTCATCCAGCCC
GCATTTGTCGAGTTTTGAATCCATGTATTCGACACGATGGAGTCTTGGTT
CTTCCGAAGTGGATGCAAAGGCATGATAACTTACTTAACTTTCACTGTGG
TCAGAAGAAACTTGAGTTTTCCGCAGATAATACCAGCCCACCAGCCTCTA
TGAATGATCTAGATCTCATCGGTTTATCTCTTCCGCGACCCAGTATCCCT
GACTTTGTTCGAGATTTTCTGCCAAATGCAATAGTATTCGACCTTATTTA
TGGTGATCGCGATGCAAGGACATCCTGTCATTCGAGAAAGGGAAGTTCTT
GTGAATCCTTCCCGTCTTTAAATGAGAGCCTGAACACAGCCATATTTCTT
CCTCCAAGGCTCGAAGCACTGGAGCAGAAGCACTCCTGGGTGCGAGAGTT
TGTGAAGTTGATGAAGCCTCCAAATGCTGGAAGACAAGCAAAAGTTTTGT
ATAATTACCCAGATGCTGATGAGGATAATGGTATGAAATGTTTCCGTTCT
GCTTTTTTCACGAGAGGACCGTTTAGCAAGTATCACATCATGAGTGATCA
TCTCCAGGAATTAAACTTTCTAAAAAGTCACGGCATAAGCAAAAAAGCGC
GACATTTCCAACAAAGTGCTGAACATGGATCTACAAATTCGGCTTCATGC
CAACTCAACATTACAATATCAAATCGGAAGTTAAACGATGACGACCCGAA
ACAACTCATTGGAAGATATATTACCAACATACCCAACATTCGAACTGAGA
TAGTGAAGCAAGCAGATCGAGTTCCTGGTTTGAATGTTCATGTAGCTGCA
ATCACTTTGGAGGGGAAGAGTTTATGGTGGCAAATCAATGCTATGCAAAA
GACGGATATCTGGGTTGCAGGACATGGCCCGTTGTTGACAAACATGCTTT
TCATGCGACAAAATTCCACAGCCATTGAAATACAACCCTTTACGTATTAC
CCGCAAGTATATGAAAGAATAGCTCAACATCTGGCTCACGTGAATTATGA
TCGCTACATAGCCAATCCCGATGAAGAGGCCTTCGAGAAATGCATCAATC
AAGTTTATCAATCGGGCCACAGTTCGTATAATGAAGTAAGAACTCTGCAC
GACAGGTATCTTCGAGCTGCGAAGAAATTCTTTCAGAGCGATAGCACTCA
CTCACTTGTTTTGCATACCCTAGAAGGCCGAGGTCTTGACTATGTGAGGG
CTTGTGCACGGATGCAACGTTTGACAACAAATGGTCGAAACTTTGCCATT
GCCATTGTGCGCCAGGCGCGTATTCGGTGTGGTTTACCCCCGCCAAGACC
TTTCGAAAGTGAAGGTGAGGTGAATCTTACTATATAG
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