Gchil3218.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3218.t1
Unique NameGchil3218.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1049148..1049675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000014722
PFAMsPUB,Thioredoxin,UBA
Max annot lvl121069|Pythiales
Evalue2.19e-11
EggNOG OGsCOG0526@1|root,KOG2699@1|root,KOG0907@2759|Eukaryota,KOG2699@2759|Eukaryota,1MBQS@121069|Pythiales
DescriptionPUB domain, zinc finger protein Thioredoxin. Source PGD
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3218Gchil3218Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1049148..1049675 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3218.t1.start1Gchil3218.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1049148..1049150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3218.t1.CDS1Gchil3218.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1049148..1049675 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3218.t1.exon1Gchil3218.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1049148..1049675 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3218.t1.stop1Gchil3218.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1049673..1049675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3218.t1Gchil3218.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1049148..1049675 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3218.t1 ID=Gchil3218.t1|Name=Gchil3218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=176bp
MMSAFSISTPLRLSPTVLPPHSKCHRRPLQLSVATPPPPLRPSDKSSSHE
HASPAQPLVGAESLQRALLTTPPGKLVAVMFHARWCRVCKTLAPKLHRVA
EQFPDVIWLSVDFAELPNKPLSAQLGVKLLPTFRFYNPQANIDDAVDHFT
TGPFGVKRLVEHLEKQSQSGVTESS*
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spliced messenger RNA

>Gchil3218.t1 ID=Gchil3218.t1|Name=Gchil3218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00004382_pilon:1049148..1049675+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCAGCCTTCTCAATCTCAACCCCGCTACGCCTCTCTCCCACCGT
ACTTCCGCCACACTCGAAGTGTCATCGCCGACCCCTACAGCTCTCCGTAG
CTACTCCTCCACCACCGCTTCGTCCCTCCGATAAGAGTTCTTCCCATGAA
CACGCCTCTCCGGCCCAGCCACTCGTTGGAGCCGAATCGTTGCAACGGGC
TCTTCTTACGACTCCTCCTGGGAAACTCGTCGCTGTGATGTTCCACGCGC
GGTGGTGCCGCGTTTGCAAGACACTTGCCCCGAAGCTGCACCGCGTCGCT
GAACAGTTTCCAGACGTCATCTGGCTTTCAGTTGACTTTGCTGAACTTCC
GAACAAGCCACTATCCGCGCAGCTGGGGGTCAAGTTGTTGCCCACCTTCA
GGTTTTACAACCCACAGGCGAACATTGACGATGCTGTAGATCATTTTACC
ACCGGACCGTTCGGTGTAAAAAGATTGGTGGAGCATTTGGAAAAGCAAAG
CCAGTCGGGCGTAACGGAGAGCTCATGA
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protein sequence of Gchil3218.t1

>Gchil3218.t1 ID=Gchil3218.t1|Name=Gchil3218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=176bp
MMSAFSISTPLRLSPTVLPPHSKCHRRPLQLSVATPPPPLRPSDKSSSHE
HASPAQPLVGAESLQRALLTTPPGKLVAVMFHARWCRVCKTLAPKLHRVA
EQFPDVIWLSVDFAELPNKPLSAQLGVKLLPTFRFYNPQANIDDAVDHFT
TGPFGVKRLVEHLEKQSQSGVTESS*
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mRNA from alignment at tig00004382_pilon:1049148..1049675+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3218.t1 ID=Gchil3218.t1|Name=Gchil3218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00004382_pilon:1049148..1049675+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCAGCCTTCTCAATCTCAACCCCGCTACGCCTCTCTCCCACCGT
ACTTCCGCCACACTCGAAGTGTCATCGCCGACCCCTACAGCTCTCCGTAG
CTACTCCTCCACCACCGCTTCGTCCCTCCGATAAGAGTTCTTCCCATGAA
CACGCCTCTCCGGCCCAGCCACTCGTTGGAGCCGAATCGTTGCAACGGGC
TCTTCTTACGACTCCTCCTGGGAAACTCGTCGCTGTGATGTTCCACGCGC
GGTGGTGCCGCGTTTGCAAGACACTTGCCCCGAAGCTGCACCGCGTCGCT
GAACAGTTTCCAGACGTCATCTGGCTTTCAGTTGACTTTGCTGAACTTCC
GAACAAGCCACTATCCGCGCAGCTGGGGGTCAAGTTGTTGCCCACCTTCA
GGTTTTACAACCCACAGGCGAACATTGACGATGCTGTAGATCATTTTACC
ACCGGACCGTTCGGTGTAAAAAGATTGGTGGAGCATTTGGAAAAGCAAAG
CCAGTCGGGCGTAACGGAGAGCTCATGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:1049148..1049675+

>Gchil3218.t1 ID=Gchil3218.t1|Name=Gchil3218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00004382_pilon:1049148..1049675+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCAGCCTTCTCAATCTCAACCCCGCTACGCCTCTCTCCCACCGT
ACTTCCGCCACACTCGAAGTGTCATCGCCGACCCCTACAGCTCTCCGTAG
CTACTCCTCCACCACCGCTTCGTCCCTCCGATAAGAGTTCTTCCCATGAA
CACGCCTCTCCGGCCCAGCCACTCGTTGGAGCCGAATCGTTGCAACGGGC
TCTTCTTACGACTCCTCCTGGGAAACTCGTCGCTGTGATGTTCCACGCGC
GGTGGTGCCGCGTTTGCAAGACACTTGCCCCGAAGCTGCACCGCGTCGCT
GAACAGTTTCCAGACGTCATCTGGCTTTCAGTTGACTTTGCTGAACTTCC
GAACAAGCCACTATCCGCGCAGCTGGGGGTCAAGTTGTTGCCCACCTTCA
GGTTTTACAACCCACAGGCGAACATTGACGATGCTGTAGATCATTTTACC
ACCGGACCGTTCGGTGTAAAAAGATTGGTGGAGCATTTGGAAAAGCAAAG
CCAGTCGGGCGTAACGGAGAGCTCATGA
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