Gchil3093.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3093.t1
Unique Name	Gchil3093.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	757

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:48150..50420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5759.rna_EHI_085030-1
PFAMs	Bromodomain
Max annot lvl	554915\|Amoebozoa
Evalue	8.94e-10
EggNOG OGs	COG5076@1\|root,KOG1474@2759\|Eukaryota,3XB1Y@554915\|Amoebozoa
Description	bromo domain
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3093	Gchil3093	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 48150..50420 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3093.t1.start1	Gchil3093.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 48150..48152 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3093.t1.CDS1	Gchil3093.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 48150..50420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3093.t1.exon1	Gchil3093.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 48150..50420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3093.t1.stop1	Gchil3093.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 50418..50420 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3093.t1	Gchil3093.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 48150..50420 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:48150..50420+
coding sequence from alignment at tig00004382_pilon:48150..50420+

mRNA sequence

>Gchil3093.t1 ID=Gchil3093.t1|Name=Gchil3093.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=757bp
MSSSSQTPTQTPTQIFAQLMATGAIDRFRKSLEKLIQPLSQARHQSISNA
TKSFLHGLVSVEDIISNPKKLLQHAKDATMTSAREDVVKDVQQTAVSEAA
VELRRTLRKAFDAIIEPPKEQPKPEPQSTRITQPQKQATNKAPPEIGKAL
SPPNGQLPNPNGGQENSSEALDQTPSPLRGKAQANDQSAQRSTQGSQNSE
FANGINAFKPSASGKTPPKTKPISSIQTIPTDLFQTAHNILELKSKKKEG
DSSLAEKENRKNEPTETQAASLELSSPKPNTLQCLASQDRPASESPKNPP
EAPSRAVDFPYSEDGLLKEDKKEAVEGENSHVESVDKSCSPMPQTSSANE
LGHACETAKMRRRSQEVADDPKRKARGGGMSEKDPDAETPRSSKKRVRKP
RKSSDMPVADEIPTPKRRRKSQAQLDSNIEVEEGSKASRKRGRREIESDL
SGRPRKAHKKSPIAASKGSERITEKRTGRKRGKGYKPVLNPAVAVLIDPQ
NPNRPRRYGMSNPSCVPKDYEAQVQVLEILENLLENDCASSFAEPVDLGD
EGQSSYLQVIKNPMDLGTIVNRLKEGTSQLGHFRTVNEVLADIELVWWNC
AQFNGSFDPVVEDMARCRVKLSLSFECLAIGCDTATIQQGRSQTQEKNNG
VKGKARAERSKHPEAASKTAREEKVKNDSENPRDLNNGRLLGKQGVIFRY
VENEDGKKRKEWSPCTITEYDAASRSYTILWEDKTETRNATIGPGCIFNI
HRFRAD*

spliced messenger RNA

>Gchil3093.t1 ID=Gchil3093.t1|Name=Gchil3093.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00004382_pilon:48150..50420+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCATCATCACAGACTCCCACACAAACTCCCACCCAAATATTTGC
ACAACTGATGGCAACCGGAGCAATAGACCGTTTCCGTAAATCTCTAGAAA
AGCTTATTCAACCGCTTTCACAAGCCCGCCATCAATCCATCTCGAATGCA
ACCAAATCTTTTCTTCACGGCTTGGTTTCAGTAGAAGACATCATCTCCAA
TCCTAAGAAGCTTTTGCAACACGCTAAAGACGCAACCATGACATCTGCGA
GGGAAGATGTAGTGAAAGATGTGCAGCAGACTGCCGTCTCAGAGGCTGCT
GTCGAGTTACGACGAACACTGAGAAAAGCCTTTGACGCCATCATCGAACC
GCCTAAAGAACAACCTAAACCGGAGCCACAGTCCACTCGAATAACACAAC
CTCAAAAACAGGCTACAAACAAAGCACCGCCTGAAATTGGAAAAGCACTG
TCTCCACCAAATGGACAGCTTCCCAATCCCAATGGTGGACAGGAAAACAG
TTCTGAAGCTCTTGACCAGACGCCATCACCACTCAGAGGAAAAGCTCAAG
CCAACGATCAAAGCGCTCAGCGATCAACGCAAGGTTCTCAAAATTCAGAG
TTTGCCAACGGAATCAATGCATTTAAGCCTTCTGCAAGTGGAAAAACCCC
ACCGAAAACTAAGCCTATCTCAAGCATACAAACCATTCCAACGGACTTGT
TCCAGACGGCCCACAACATTCTCGAGTTGAAGTCTAAAAAAAAAGAAGGC
GACAGTTCTCTTGCGGAAAAGGAGAATAGGAAAAACGAGCCCACCGAAAC
CCAAGCAGCTTCACTCGAGCTTTCGTCCCCCAAACCGAATACTCTTCAAT
GTCTGGCTTCACAAGACCGGCCGGCATCAGAATCTCCAAAGAACCCTCCA
GAAGCACCATCAAGAGCCGTTGATTTCCCATACTCGGAGGACGGGTTGCT
CAAGGAAGACAAGAAGGAGGCAGTTGAAGGTGAAAACTCGCACGTCGAGA
GCGTCGACAAAAGCTGCTCTCCAATGCCACAGACGTCTTCTGCAAATGAA
TTGGGGCATGCATGTGAAACCGCAAAAATGCGAAGGAGATCACAAGAAGT
TGCGGATGACCCAAAGCGCAAAGCTAGGGGTGGTGGCATGTCTGAGAAGG
ATCCTGATGCTGAAACACCGAGAAGTTCGAAGAAACGAGTTCGTAAACCT
CGGAAGTCTTCTGATATGCCTGTGGCTGATGAAATTCCGACTCCCAAACG
TCGGAGAAAATCACAAGCGCAACTGGATAGTAATATCGAAGTTGAAGAGG
GCTCAAAAGCTAGCAGGAAACGAGGTCGGAGAGAAATTGAATCTGATCTT
AGCGGAAGACCACGGAAGGCTCACAAAAAGAGTCCCATAGCGGCGAGCAA
GGGTAGCGAGCGTATTACAGAAAAACGAACTGGGAGAAAGAGAGGAAAAG
GCTATAAACCAGTGCTTAACCCTGCCGTGGCAGTTTTGATCGATCCTCAG
AATCCAAATCGTCCAAGAAGATATGGCATGTCGAATCCTTCTTGTGTTCC
GAAAGATTATGAAGCGCAAGTTCAAGTTCTTGAAATCTTGGAAAATTTGC
TCGAGAATGACTGCGCTTCTTCGTTCGCAGAGCCTGTAGACCTTGGCGAT
GAGGGCCAGTCCTCGTATTTGCAGGTGATCAAAAATCCAATGGACCTTGG
CACCATTGTTAATCGTTTGAAAGAAGGCACATCACAACTAGGGCACTTCA
GAACCGTTAATGAAGTTCTTGCGGATATTGAACTGGTGTGGTGGAATTGT
GCGCAATTCAACGGGAGCTTCGATCCTGTCGTAGAAGATATGGCTCGATG
CAGGGTGAAGCTATCTCTGAGCTTTGAGTGTTTAGCTATTGGTTGCGACA
CAGCAACAATCCAGCAAGGGCGTTCACAGACACAAGAAAAGAACAATGGG
GTGAAAGGCAAAGCGCGTGCAGAAAGATCAAAGCATCCTGAAGCCGCAAG
CAAGACCGCGCGAGAAGAGAAAGTGAAGAATGACAGTGAAAATCCGAGAG
ATTTAAACAACGGGCGGTTGCTCGGGAAACAGGGGGTGATATTCAGATAC
GTTGAAAACGAGGACGGTAAGAAACGAAAGGAATGGTCTCCATGCACTAT
TACAGAGTATGACGCCGCGAGCAGAAGTTACACTATTCTTTGGGAAGACA
AGACAGAGACAAGGAACGCTACAATCGGGCCGGGTTGCATTTTCAATATA
CATAGATTTAGGGCCGATTAA

protein sequence of Gchil3093.t1

>Gchil3093.t1 ID=Gchil3093.t1|Name=Gchil3093.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=757bp
MSSSSQTPTQTPTQIFAQLMATGAIDRFRKSLEKLIQPLSQARHQSISNA
TKSFLHGLVSVEDIISNPKKLLQHAKDATMTSAREDVVKDVQQTAVSEAA
VELRRTLRKAFDAIIEPPKEQPKPEPQSTRITQPQKQATNKAPPEIGKAL
SPPNGQLPNPNGGQENSSEALDQTPSPLRGKAQANDQSAQRSTQGSQNSE
FANGINAFKPSASGKTPPKTKPISSIQTIPTDLFQTAHNILELKSKKKEG
DSSLAEKENRKNEPTETQAASLELSSPKPNTLQCLASQDRPASESPKNPP
EAPSRAVDFPYSEDGLLKEDKKEAVEGENSHVESVDKSCSPMPQTSSANE
LGHACETAKMRRRSQEVADDPKRKARGGGMSEKDPDAETPRSSKKRVRKP
RKSSDMPVADEIPTPKRRRKSQAQLDSNIEVEEGSKASRKRGRREIESDL
SGRPRKAHKKSPIAASKGSERITEKRTGRKRGKGYKPVLNPAVAVLIDPQ
NPNRPRRYGMSNPSCVPKDYEAQVQVLEILENLLENDCASSFAEPVDLGD
EGQSSYLQVIKNPMDLGTIVNRLKEGTSQLGHFRTVNEVLADIELVWWNC
AQFNGSFDPVVEDMARCRVKLSLSFECLAIGCDTATIQQGRSQTQEKNNG
VKGKARAERSKHPEAASKTAREEKVKNDSENPRDLNNGRLLGKQGVIFRY
VENEDGKKRKEWSPCTITEYDAASRSYTILWEDKTETRNATIGPGCIFNI
HRFRAD*

mRNA from alignment at tig00004382_pilon:48150..50420+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3093.t1 ID=Gchil3093.t1|Name=Gchil3093.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00004382_pilon:48150..50420+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATCATCACAGACTCCCACACAAACTCCCACCCAAATATTTGC
ACAACTGATGGCAACCGGAGCAATAGACCGTTTCCGTAAATCTCTAGAAA
AGCTTATTCAACCGCTTTCACAAGCCCGCCATCAATCCATCTCGAATGCA
ACCAAATCTTTTCTTCACGGCTTGGTTTCAGTAGAAGACATCATCTCCAA
TCCTAAGAAGCTTTTGCAACACGCTAAAGACGCAACCATGACATCTGCGA
GGGAAGATGTAGTGAAAGATGTGCAGCAGACTGCCGTCTCAGAGGCTGCT
GTCGAGTTACGACGAACACTGAGAAAAGCCTTTGACGCCATCATCGAACC
GCCTAAAGAACAACCTAAACCGGAGCCACAGTCCACTCGAATAACACAAC
CTCAAAAACAGGCTACAAACAAAGCACCGCCTGAAATTGGAAAAGCACTG
TCTCCACCAAATGGACAGCTTCCCAATCCCAATGGTGGACAGGAAAACAG
TTCTGAAGCTCTTGACCAGACGCCATCACCACTCAGAGGAAAAGCTCAAG
CCAACGATCAAAGCGCTCAGCGATCAACGCAAGGTTCTCAAAATTCAGAG
TTTGCCAACGGAATCAATGCATTTAAGCCTTCTGCAAGTGGAAAAACCCC
ACCGAAAACTAAGCCTATCTCAAGCATACAAACCATTCCAACGGACTTGT
TCCAGACGGCCCACAACATTCTCGAGTTGAAGTCTAAAAAAAAAGAAGGC
GACAGTTCTCTTGCGGAAAAGGAGAATAGGAAAAACGAGCCCACCGAAAC
CCAAGCAGCTTCACTCGAGCTTTCGTCCCCCAAACCGAATACTCTTCAAT
GTCTGGCTTCACAAGACCGGCCGGCATCAGAATCTCCAAAGAACCCTCCA
GAAGCACCATCAAGAGCCGTTGATTTCCCATACTCGGAGGACGGGTTGCT
CAAGGAAGACAAGAAGGAGGCAGTTGAAGGTGAAAACTCGCACGTCGAGA
GCGTCGACAAAAGCTGCTCTCCAATGCCACAGACGTCTTCTGCAAATGAA
TTGGGGCATGCATGTGAAACCGCAAAAATGCGAAGGAGATCACAAGAAGT
TGCGGATGACCCAAAGCGCAAAGCTAGGGGTGGTGGCATGTCTGAGAAGG
ATCCTGATGCTGAAACACCGAGAAGTTCGAAGAAACGAGTTCGTAAACCT
CGGAAGTCTTCTGATATGCCTGTGGCTGATGAAATTCCGACTCCCAAACG
TCGGAGAAAATCACAAGCGCAACTGGATAGTAATATCGAAGTTGAAGAGG
GCTCAAAAGCTAGCAGGAAACGAGGTCGGAGAGAAATTGAATCTGATCTT
AGCGGAAGACCACGGAAGGCTCACAAAAAGAGTCCCATAGCGGCGAGCAA
GGGTAGCGAGCGTATTACAGAAAAACGAACTGGGAGAAAGAGAGGAAAAG
GCTATAAACCAGTGCTTAACCCTGCCGTGGCAGTTTTGATCGATCCTCAG
AATCCAAATCGTCCAAGAAGATATGGCATGTCGAATCCTTCTTGTGTTCC
GAAAGATTATGAAGCGCAAGTTCAAGTTCTTGAAATCTTGGAAAATTTGC
TCGAGAATGACTGCGCTTCTTCGTTCGCAGAGCCTGTAGACCTTGGCGAT
GAGGGCCAGTCCTCGTATTTGCAGGTGATCAAAAATCCAATGGACCTTGG
CACCATTGTTAATCGTTTGAAAGAAGGCACATCACAACTAGGGCACTTCA
GAACCGTTAATGAAGTTCTTGCGGATATTGAACTGGTGTGGTGGAATTGT
GCGCAATTCAACGGGAGCTTCGATCCTGTCGTAGAAGATATGGCTCGATG
CAGGGTGAAGCTATCTCTGAGCTTTGAGTGTTTAGCTATTGGTTGCGACA
CAGCAACAATCCAGCAAGGGCGTTCACAGACACAAGAAAAGAACAATGGG
GTGAAAGGCAAAGCGCGTGCAGAAAGATCAAAGCATCCTGAAGCCGCAAG
CAAGACCGCGCGAGAAGAGAAAGTGAAGAATGACAGTGAAAATCCGAGAG
ATTTAAACAACGGGCGGTTGCTCGGGAAACAGGGGGTGATATTCAGATAC
GTTGAAAACGAGGACGGTAAGAAACGAAAGGAATGGTCTCCATGCACTAT
TACAGAGTATGACGCCGCGAGCAGAAGTTACACTATTCTTTGGGAAGACA
AGACAGAGACAAGGAACGCTACAATCGGGCCGGGTTGCATTTTCAATATA
CATAGATTTAGGGCCGATTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:48150..50420+

>Gchil3093.t1 ID=Gchil3093.t1|Name=Gchil3093.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2271bp|location=Sequence derived from alignment at tig00004382_pilon:48150..50420+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATCATCACAGACTCCCACACAAACTCCCACCCAAATATTTGC
ACAACTGATGGCAACCGGAGCAATAGACCGTTTCCGTAAATCTCTAGAAA
AGCTTATTCAACCGCTTTCACAAGCCCGCCATCAATCCATCTCGAATGCA
ACCAAATCTTTTCTTCACGGCTTGGTTTCAGTAGAAGACATCATCTCCAA
TCCTAAGAAGCTTTTGCAACACGCTAAAGACGCAACCATGACATCTGCGA
GGGAAGATGTAGTGAAAGATGTGCAGCAGACTGCCGTCTCAGAGGCTGCT
GTCGAGTTACGACGAACACTGAGAAAAGCCTTTGACGCCATCATCGAACC
GCCTAAAGAACAACCTAAACCGGAGCCACAGTCCACTCGAATAACACAAC
CTCAAAAACAGGCTACAAACAAAGCACCGCCTGAAATTGGAAAAGCACTG
TCTCCACCAAATGGACAGCTTCCCAATCCCAATGGTGGACAGGAAAACAG
TTCTGAAGCTCTTGACCAGACGCCATCACCACTCAGAGGAAAAGCTCAAG
CCAACGATCAAAGCGCTCAGCGATCAACGCAAGGTTCTCAAAATTCAGAG
TTTGCCAACGGAATCAATGCATTTAAGCCTTCTGCAAGTGGAAAAACCCC
ACCGAAAACTAAGCCTATCTCAAGCATACAAACCATTCCAACGGACTTGT
TCCAGACGGCCCACAACATTCTCGAGTTGAAGTCTAAAAAAAAAGAAGGC
GACAGTTCTCTTGCGGAAAAGGAGAATAGGAAAAACGAGCCCACCGAAAC
CCAAGCAGCTTCACTCGAGCTTTCGTCCCCCAAACCGAATACTCTTCAAT
GTCTGGCTTCACAAGACCGGCCGGCATCAGAATCTCCAAAGAACCCTCCA
GAAGCACCATCAAGAGCCGTTGATTTCCCATACTCGGAGGACGGGTTGCT
CAAGGAAGACAAGAAGGAGGCAGTTGAAGGTGAAAACTCGCACGTCGAGA
GCGTCGACAAAAGCTGCTCTCCAATGCCACAGACGTCTTCTGCAAATGAA
TTGGGGCATGCATGTGAAACCGCAAAAATGCGAAGGAGATCACAAGAAGT
TGCGGATGACCCAAAGCGCAAAGCTAGGGGTGGTGGCATGTCTGAGAAGG
ATCCTGATGCTGAAACACCGAGAAGTTCGAAGAAACGAGTTCGTAAACCT
CGGAAGTCTTCTGATATGCCTGTGGCTGATGAAATTCCGACTCCCAAACG
TCGGAGAAAATCACAAGCGCAACTGGATAGTAATATCGAAGTTGAAGAGG
GCTCAAAAGCTAGCAGGAAACGAGGTCGGAGAGAAATTGAATCTGATCTT
AGCGGAAGACCACGGAAGGCTCACAAAAAGAGTCCCATAGCGGCGAGCAA
GGGTAGCGAGCGTATTACAGAAAAACGAACTGGGAGAAAGAGAGGAAAAG
GCTATAAACCAGTGCTTAACCCTGCCGTGGCAGTTTTGATCGATCCTCAG
AATCCAAATCGTCCAAGAAGATATGGCATGTCGAATCCTTCTTGTGTTCC
GAAAGATTATGAAGCGCAAGTTCAAGTTCTTGAAATCTTGGAAAATTTGC
TCGAGAATGACTGCGCTTCTTCGTTCGCAGAGCCTGTAGACCTTGGCGAT
GAGGGCCAGTCCTCGTATTTGCAGGTGATCAAAAATCCAATGGACCTTGG
CACCATTGTTAATCGTTTGAAAGAAGGCACATCACAACTAGGGCACTTCA
GAACCGTTAATGAAGTTCTTGCGGATATTGAACTGGTGTGGTGGAATTGT
GCGCAATTCAACGGGAGCTTCGATCCTGTCGTAGAAGATATGGCTCGATG
CAGGGTGAAGCTATCTCTGAGCTTTGAGTGTTTAGCTATTGGTTGCGACA
CAGCAACAATCCAGCAAGGGCGTTCACAGACACAAGAAAAGAACAATGGG
GTGAAAGGCAAAGCGCGTGCAGAAAGATCAAAGCATCCTGAAGCCGCAAG
CAAGACCGCGCGAGAAGAGAAAGTGAAGAATGACAGTGAAAATCCGAGAG
ATTTAAACAACGGGCGGTTGCTCGGGAAACAGGGGGTGATATTCAGATAC
GTTGAAAACGAGGACGGTAAGAAACGAAAGGAATGGTCTCCATGCACTAT
TACAGAGTATGACGCCGCGAGCAGAAGTTACACTATTCTTTGGGAAGACA
AGACAGAGACAAGGAACGCTACAATCGGGCCGGGTTGCATTTTCAATATA
CATAGATTTAGGGCCGATTAA