Gchil3032.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3032.t1
Unique Name	Gchil3032.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	238

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1204521..1205234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705154.1
Preferred name	GOSR2
PFAMs	V-SNARE_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00061,RC02742,RC02857
KEGG ko	ko:K00627,ko:K03935,ko:K08496,ko:K19200
KEGG TC	3.D.1.6
KEGG Reaction	R00209,R02569,R11945
KEGG Pathway	ko00010,ko00020,ko00190,ko00311,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04130,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00010,map00020,map00190,map00311,map00620,map01100,map01110,map01120,map01130,map01200,map04130,map04714,map04723,map04932,map05010,map05012,map05016
KEGG Module	M00143,M00307
GOs	GO:0000139,GO:0000149,GO:0002682,GO:0002791,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006950,GO:0006986,GO:0006996,GO:0007034,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009987,GO:0010008,GO:0010033,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0022607,GO:0023052,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030968,GO:0031090,GO:0031201,GO:0031224,GO:0031347,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033116,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042147,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0048583,GO:0050708,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080134,GO:0090087,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:1903530
Evalue	0.000401
EggNOG OGs	KOG3251@1\|root,KOG3251@2759\|Eukaryota
EC	1.6.5.3,1.6.99.3,2.3.1.12
Description	vesicle fusion with Golgi apparatus
COG category	U
BRITE	br01601,ko00000,ko00001,ko00002,ko01000,ko01002,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3032	Gchil3032	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1204521..1205234 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3032.t1.start1	Gchil3032.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1204521..1204523 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3032.t1.CDS1	Gchil3032.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1204521..1205234 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3032.t1.exon1	Gchil3032.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1204521..1205234 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3032.t1.stop1	Gchil3032.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1205232..1205234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3032.t1	Gchil3032.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1204521..1205234 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1204521..1205234+
coding sequence from alignment at tig00000106_pilon:1204521..1205234+

mRNA sequence

>Gchil3032.t1 ID=Gchil3032.t1|Name=Gchil3032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=238bp
MDDAYRDTRRVLLEARNQLETLEAACANAQLDPQASAVVATAFRHNLARL
TDHSARLRTLVPAQAATTTTRRMWDARVKDLDDQIGELRAGDARCTRRFR
CIRSDYMLRDELFQRRGAGVGHMGQTGQTGQTGDAVLRLGMVEEKRALKQ
SGTMLSGVVNTGASTLEQLIAQRGRLNKVKNNVVGVMKQVGVDGRLIASI
ERRQFSDTVVLYSLMVVMVLLLALAVLYKYQRHKHSG*

spliced messenger RNA

>Gchil3032.t1 ID=Gchil3032.t1|Name=Gchil3032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000106_pilon:1204521..1205234+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGCGTACCGCGACACGCGACGCGTGCTGCTGGAGGCGCGCAA
CCAGCTGGAGACGCTGGAGGCGGCGTGCGCCAACGCGCAGCTTGACCCAC
AGGCGTCGGCCGTGGTGGCCACTGCGTTCCGTCACAACCTCGCGCGCCTC
ACCGACCACTCTGCCAGGCTGCGCACGTTGGTTCCCGCGCAGGCAGCCAC
GACGACGACGCGTCGTATGTGGGACGCACGAGTGAAGGACCTCGACGATC
AAATCGGAGAGTTGCGCGCAGGCGACGCGCGCTGTACTCGGCGCTTCCGC
TGCATTCGTTCGGACTATATGCTGCGCGACGAGCTGTTTCAGCGGCGCGG
TGCGGGGGTGGGGCACATGGGGCAGACGGGGCAGACGGGGCAGACGGGGG
ATGCGGTGCTGCGGTTGGGCATGGTGGAAGAGAAACGCGCACTCAAGCAG
TCGGGCACGATGCTGTCGGGGGTGGTGAACACAGGCGCAAGCACGCTGGA
GCAGTTGATTGCGCAGCGCGGACGGCTCAACAAGGTGAAGAACAACGTGG
TGGGCGTGATGAAACAGGTGGGCGTGGATGGACGGTTGATCGCGTCCATT
GAGCGTCGGCAGTTTTCGGATACAGTTGTGCTTTACTCGCTGATGGTTGT
GATGGTTTTGCTGCTGGCGTTGGCCGTTTTGTACAAGTACCAGCGACACA
AGCACAGCGGGTGA

protein sequence of Gchil3032.t1

>Gchil3032.t1 ID=Gchil3032.t1|Name=Gchil3032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MDDAYRDTRRVLLEARNQLETLEAACANAQLDPQASAVVATAFRHNLARL
TDHSARLRTLVPAQAATTTTRRMWDARVKDLDDQIGELRAGDARCTRRFR
CIRSDYMLRDELFQRRGAGVGHMGQTGQTGQTGDAVLRLGMVEEKRALKQ
SGTMLSGVVNTGASTLEQLIAQRGRLNKVKNNVVGVMKQVGVDGRLIASI
ERRQFSDTVVLYSLMVVMVLLLALAVLYKYQRHKHSG*

mRNA from alignment at tig00000106_pilon:1204521..1205234+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3032.t1 ID=Gchil3032.t1|Name=Gchil3032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00000106_pilon:1204521..1205234+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACGCGTACCGCGACACGCGACGCGTGCTGCTGGAGGCGCGCAA
CCAGCTGGAGACGCTGGAGGCGGCGTGCGCCAACGCGCAGCTTGACCCAC
AGGCGTCGGCCGTGGTGGCCACTGCGTTCCGTCACAACCTCGCGCGCCTC
ACCGACCACTCTGCCAGGCTGCGCACGTTGGTTCCCGCGCAGGCAGCCAC
GACGACGACGCGTCGTATGTGGGACGCACGAGTGAAGGACCTCGACGATC
AAATCGGAGAGTTGCGCGCAGGCGACGCGCGCTGTACTCGGCGCTTCCGC
TGCATTCGTTCGGACTATATGCTGCGCGACGAGCTGTTTCAGCGGCGCGG
TGCGGGGGTGGGGCACATGGGGCAGACGGGGCAGACGGGGCAGACGGGGG
ATGCGGTGCTGCGGTTGGGCATGGTGGAAGAGAAACGCGCACTCAAGCAG
TCGGGCACGATGCTGTCGGGGGTGGTGAACACAGGCGCAAGCACGCTGGA
GCAGTTGATTGCGCAGCGCGGACGGCTCAACAAGGTGAAGAACAACGTGG
TGGGCGTGATGAAACAGGTGGGCGTGGATGGACGGTTGATCGCGTCCATT
GAGCGTCGGCAGTTTTCGGATACAGTTGTGCTTTACTCGCTGATGGTTGT
GATGGTTTTGCTGCTGGCGTTGGCCGTTTTGTACAAGTACCAGCGACACA
AGCACAGCGGGTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:1204521..1205234+

>Gchil3032.t1 ID=Gchil3032.t1|Name=Gchil3032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00000106_pilon:1204521..1205234+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGACGCGTACCGCGACACGCGACGCGTGCTGCTGGAGGCGCGCAA
CCAGCTGGAGACGCTGGAGGCGGCGTGCGCCAACGCGCAGCTTGACCCAC
AGGCGTCGGCCGTGGTGGCCACTGCGTTCCGTCACAACCTCGCGCGCCTC
ACCGACCACTCTGCCAGGCTGCGCACGTTGGTTCCCGCGCAGGCAGCCAC
GACGACGACGCGTCGTATGTGGGACGCACGAGTGAAGGACCTCGACGATC
AAATCGGAGAGTTGCGCGCAGGCGACGCGCGCTGTACTCGGCGCTTCCGC
TGCATTCGTTCGGACTATATGCTGCGCGACGAGCTGTTTCAGCGGCGCGG
TGCGGGGGTGGGGCACATGGGGCAGACGGGGCAGACGGGGCAGACGGGGG
ATGCGGTGCTGCGGTTGGGCATGGTGGAAGAGAAACGCGCACTCAAGCAG
TCGGGCACGATGCTGTCGGGGGTGGTGAACACAGGCGCAAGCACGCTGGA
GCAGTTGATTGCGCAGCGCGGACGGCTCAACAAGGTGAAGAACAACGTGG
TGGGCGTGATGAAACAGGTGGGCGTGGATGGACGGTTGATCGCGTCCATT
GAGCGTCGGCAGTTTTCGGATACAGTTGTGCTTTACTCGCTGATGGTTGT
GATGGTTTTGCTGCTGGCGTTGGCCGTTTTGTACAAGTACCAGCGACACA
AGCACAGCGGGTGA