Gchil3006.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3006.t1
Unique NameGchil3006.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:969620..970807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002953604.1
Max annot lvl3041|Chlorophyta
Evalue1.75e-05
EggNOG OGs2ESNN@1|root,2SV6E@2759|Eukaryota,380X7@33090|Viridiplantae,34N4U@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3006Gchil3006Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 969620..970807 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3006.t1.start1Gchil3006.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 969620..969622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3006.t1.CDS1Gchil3006.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 969620..970807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3006.t1.exon1Gchil3006.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 969620..970807 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3006.t1.stop1Gchil3006.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 970805..970807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3006.t1Gchil3006.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 969620..970807 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3006.t1 ID=Gchil3006.t1|Name=Gchil3006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp
MPTDLPPAAPPSSPPPERRPDAPADAPADAPAVEPAIEPAIEPAIEPAAA
PKPTTPSAEPQPPSSPFGGWAALDRLHLRTLFSAPDAVDADEADDADDAD
DANHVTGTTAVRPASSAKATPTTTATATAATTATTAEQPPSPSSPPSSPP
SSQHPAADRPAARTPDLKATAAHLAHAASAELQHASEAAQHTFGKAAQEL
GKGWGTLNSFLDDMLAPAASSTASHRAAPSSDAQRVLKHFHQHFPTLPER
DDVVDHFECTLIQKYRCQLNDATPEKVFPLSGTMFVTTSHIAMYIVDRHT
VFSSESFGVTIPLADVAKIQKGAKSMLRLLTVDKHSYIFAQFESNTHFNA
AISLLEHMTAPPQALSEPPRAQTPPSPADQPSHAPTAQTGTVRLH*
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spliced messenger RNA

>Gchil3006.t1 ID=Gchil3006.t1|Name=Gchil3006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000106_pilon:969620..970807+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCGACTTgccgcccgccgccccgccgtcgtctcctcccccgga
aaggcgccccgacgcccccgccgacgcccccgccgacgcccccgccgtcg
agcccgccatcgagcccgccatcgagcccgccatcgagcccgccgccgcg
cccaagcccaccaccccctccgccgagccgcagccgccgtcgtcgccgTT
CGGCGGCTGGGCCGCCCTAGATCGCCTGCACCTGCGCACGCTCTTCTCCG
CGCCTGACGCTGTGgacgccgacgaagccgacgacgccgacgacgccgac
gacgccAACCATGTAACAGGCACCACCGCCGTGCGCCCCGCGTCttccgc
aaaggccacgcccaccaccacggctaccgccacagccgccactaccgcca
ccaccgccgagcagccgccgtcgccgtcgtcgccgccgtcgtcgccgccg
tcgtcgcaacaccccgccgccgatcgccCTGCCGCGCGCACTCCCGACCT
CAAGGCCACCGCCGCGCATCTCGCGCACGCCGCCTCCGCAGAGCTGCAGC
ACGCCTCCGAAGCCGCGCAGCACACCTTCGGAAAGGCCGCCCAGGAGCTG
GGGAAGGGCTGGGGCACGCTCAACAGCTTTCTGGACGATATGCTCGCGCC
GGCTGCGTCTAGCACTGCTTCGCACCGCGCCGCGCCCTCCTCTGATGCTC
AACGCGTGCTCAAACACTTCCATCAGCACTTCCCGACCTTGCCTGAGCGC
GACGATGTCGTGGACCACTTTGAATGCACGCTCATTCAAAAGTATCGCTG
TCAACTCAACGATGCCACCCCGGAAAAGGTGTTTCCGCTGTCGGGAACCA
TGTTTGTCACCACCTCGCACATCGCCATGTATATTGTTGACCGTCACACC
GTGTTCTCATCCGAATCGTTCGGCGTCACCATCCCGCTCGCTGACGTGGC
GAAGATCCAAAAGGGCGCCAAAAGCATGCTCAGGCTGCTCACCGTTGACA
AGCACAGCTACATCTTTGCACAGTTCGAATCGAACACCCACTTCAACGCC
GCCATCTCCTTGCTGGAGCACATGACCGCCCCGCCGCAAGCGCTATCCGA
ACCGCCCCGCGCCCAAACACCACCTTCGCCCGCTGACCAACCCTCGCACG
CGCCGACCGCCCAAACCGGCACTGTACGCCTGCACTAA
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protein sequence of Gchil3006.t1

>Gchil3006.t1 ID=Gchil3006.t1|Name=Gchil3006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MPTDLPPAAPPSSPPPERRPDAPADAPADAPAVEPAIEPAIEPAIEPAAA
PKPTTPSAEPQPPSSPFGGWAALDRLHLRTLFSAPDAVDADEADDADDAD
DANHVTGTTAVRPASSAKATPTTTATATAATTATTAEQPPSPSSPPSSPP
SSQHPAADRPAARTPDLKATAAHLAHAASAELQHASEAAQHTFGKAAQEL
GKGWGTLNSFLDDMLAPAASSTASHRAAPSSDAQRVLKHFHQHFPTLPER
DDVVDHFECTLIQKYRCQLNDATPEKVFPLSGTMFVTTSHIAMYIVDRHT
VFSSESFGVTIPLADVAKIQKGAKSMLRLLTVDKHSYIFAQFESNTHFNA
AISLLEHMTAPPQALSEPPRAQTPPSPADQPSHAPTAQTGTVRLH*
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mRNA from alignment at tig00000106_pilon:969620..970807+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3006.t1 ID=Gchil3006.t1|Name=Gchil3006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000106_pilon:969620..970807+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACCGACTTgccgcccgccgccccgccgtcgtctcctcccccgga
aaggcgccccgacgcccccgccgacgcccccgccgacgcccccgccgtcg
agcccgccatcgagcccgccatcgagcccgccatcgagcccgccgccgcg
cccaagcccaccaccccctccgccgagccgcagccgccgtcgtcgccgTT
CGGCGGCTGGGCCGCCCTAGATCGCCTGCACCTGCGCACGCTCTTCTCCG
CGCCTGACGCTGTGgacgccgacgaagccgacgacgccgacgacgccgac
gacgccAACCATGTAACAGGCACCACCGCCGTGCGCCCCGCGTCttccgc
aaaggccacgcccaccaccacggctaccgccacagccgccactaccgcca
ccaccgccgagcagccgccgtcgccgtcgtcgccgccgtcgtcgccgccg
tcgtcgcaacaccccgccgccgatcgccCTGCCGCGCGCACTCCCGACCT
CAAGGCCACCGCCGCGCATCTCGCGCACGCCGCCTCCGCAGAGCTGCAGC
ACGCCTCCGAAGCCGCGCAGCACACCTTCGGAAAGGCCGCCCAGGAGCTG
GGGAAGGGCTGGGGCACGCTCAACAGCTTTCTGGACGATATGCTCGCGCC
GGCTGCGTCTAGCACTGCTTCGCACCGCGCCGCGCCCTCCTCTGATGCTC
AACGCGTGCTCAAACACTTCCATCAGCACTTCCCGACCTTGCCTGAGCGC
GACGATGTCGTGGACCACTTTGAATGCACGCTCATTCAAAAGTATCGCTG
TCAACTCAACGATGCCACCCCGGAAAAGGTGTTTCCGCTGTCGGGAACCA
TGTTTGTCACCACCTCGCACATCGCCATGTATATTGTTGACCGTCACACC
GTGTTCTCATCCGAATCGTTCGGCGTCACCATCCCGCTCGCTGACGTGGC
GAAGATCCAAAAGGGCGCCAAAAGCATGCTCAGGCTGCTCACCGTTGACA
AGCACAGCTACATCTTTGCACAGTTCGAATCGAACACCCACTTCAACGCC
GCCATCTCCTTGCTGGAGCACATGACCGCCCCGCCGCAAGCGCTATCCGA
ACCGCCCCGCGCCCAAACACCACCTTCGCCCGCTGACCAACCCTCGCACG
CGCCGACCGCCCAAACCGGCACTGTACGCCTGCACTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:969620..970807+

>Gchil3006.t1 ID=Gchil3006.t1|Name=Gchil3006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000106_pilon:969620..970807+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACCGACTTgccgcccgccgccccgccgtcgtctcctcccccgga
aaggcgccccgacgcccccgccgacgcccccgccgacgcccccgccgtcg
agcccgccatcgagcccgccatcgagcccgccatcgagcccgccgccgcg
cccaagcccaccaccccctccgccgagccgcagccgccgtcgtcgccgTT
CGGCGGCTGGGCCGCCCTAGATCGCCTGCACCTGCGCACGCTCTTCTCCG
CGCCTGACGCTGTGgacgccgacgaagccgacgacgccgacgacgccgac
gacgccAACCATGTAACAGGCACCACCGCCGTGCGCCCCGCGTCttccgc
aaaggccacgcccaccaccacggctaccgccacagccgccactaccgcca
ccaccgccgagcagccgccgtcgccgtcgtcgccgccgtcgtcgccgccg
tcgtcgcaacaccccgccgccgatcgccCTGCCGCGCGCACTCCCGACCT
CAAGGCCACCGCCGCGCATCTCGCGCACGCCGCCTCCGCAGAGCTGCAGC
ACGCCTCCGAAGCCGCGCAGCACACCTTCGGAAAGGCCGCCCAGGAGCTG
GGGAAGGGCTGGGGCACGCTCAACAGCTTTCTGGACGATATGCTCGCGCC
GGCTGCGTCTAGCACTGCTTCGCACCGCGCCGCGCCCTCCTCTGATGCTC
AACGCGTGCTCAAACACTTCCATCAGCACTTCCCGACCTTGCCTGAGCGC
GACGATGTCGTGGACCACTTTGAATGCACGCTCATTCAAAAGTATCGCTG
TCAACTCAACGATGCCACCCCGGAAAAGGTGTTTCCGCTGTCGGGAACCA
TGTTTGTCACCACCTCGCACATCGCCATGTATATTGTTGACCGTCACACC
GTGTTCTCATCCGAATCGTTCGGCGTCACCATCCCGCTCGCTGACGTGGC
GAAGATCCAAAAGGGCGCCAAAAGCATGCTCAGGCTGCTCACCGTTGACA
AGCACAGCTACATCTTTGCACAGTTCGAATCGAACACCCACTTCAACGCC
GCCATCTCCTTGCTGGAGCACATGACCGCCCCGCCGCAAGCGCTATCCGA
ACCGCCCCGCGCCCAAACACCACCTTCGCCCGCTGACCAACCCTCGCACG
CGCCGACCGCCCAAACCGGCACTGTACGCCTGCACTAA
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