Gchil2893.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2893.t1
Unique NameGchil2893.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:47411..48652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706867.1
Max annot lvl2759|Eukaryota
Evalue6.25e-16
EggNOG OGs2CTQS@1|root,2SU36@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2893Gchil2893Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 47411..48652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2893.t1.stop1Gchil2893.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 47411..47413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2893.t1.CDS1Gchil2893.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 47411..48652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2893.t1.exon1Gchil2893.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 47411..48652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2893.t1.start1Gchil2893.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 48650..48652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2893.t1Gchil2893.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 47411..48652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2893.t1 ID=Gchil2893.t1|Name=Gchil2893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MFQAFIIPFALCSSSNPIGHSASPTRLGPNRRIPEHGGEHSDLLEEVSKA
VEMWQIRTNSPSNWLPSNSIVRRCEVARDLHLNTLITKAGGHRYVQHMLN
LDPPSTAVKSYQEQEVREMACLLSTACQANGFPPPEERFPTRHQIRQLSP
TLANRIAAFPGRGGYGKLAEYIKSSSSTSTGDFFYSSEEQHTLGTWGIWT
STDLILKELRQHQSHPRIMPRLCSLPSSIACAIQRKGGAAQFAQQTNLIL
EKDMLKMIRFASVVRWLDQMVQTSNPNDCPYIDLVRLQMENPPQFPSSRE
VHKWGMETNLARCGGRRYLALRLGFSPNCGINGLRMEPFSVHFAADILGF
AISEVLVSMDGNLAMPSINFLVQNGKFNLAEATELLGGEAAVGRRIGLVP
DMSKSDECESVIL*
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spliced messenger RNA

>Gchil2893.t1 ID=Gchil2893.t1|Name=Gchil2893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000106_pilon:47411..48652- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCAGGCATTTATCATCCCATTTGCTTTGTGCTCAAGCTCCAACCC
CATCGGGCATTCCGCGAGTCCAACAAGGCTTGGCCCGAACAGACGAATTC
CTGAACATGGAGGTGAGCATTCAGATCTTCTCGAGGAGGTCTCCAAAGCT
GTGGAGATGTGGCAAATTCGGACGAACTCTCCTTCAAACTGGCTTCCTTC
GAACTCCATTGTGCGGCGTTGTGAAGTAGCCAGAGATCTACATCTCAATA
CTCTGATCACGAAAGCGGGAGGGCATCGCTACGTTCAGCATATGCTAAAC
CTCGACCCTCCTAGTACTGCCGTAAAGAGCTATCAAGAGCAAGAGGTAAG
GGAAATGGCATGTTTATTGAGTACAGCCTGTCAGGCAAACGGTTTTCCTC
CCCCAGAAGAGCGGTTTCCAACTCGACATCAGATTAGGCAGTTATCACCG
ACTCTTGCGAATCGTATTGCGGCATTCCCGGGCCGAGGTGGTTATGGAAA
ATTAGCTGAGTACATAAAAAGCTCTTCTTCAACATCAACTGGGGACTTCT
TTTATTCAAGTGAAGAGCAGCATACATTGGGAACATGGGGTATTTGGACT
TCAACAGATTTAATCTTGAAAGAATTAAGGCAACACCAGAGTCATCCGCG
GATCATGCCTCGCTTGTGCTCTTTGCCAAGCAGCATTGCATGTGCCATTC
AGCGAAAAGGTGGCGCGGCGCAGTTTGCACAACAGACGAACTTGATTCTT
GAGAAGGACATGCTGAAGATGATCAGGTTTGCTTCTGTAGTGAGATGGTT
GGACCAAATGGTCCAGACGTCCAATCCTAATGATTGCCCGTACATCGATC
TCGTCCGTTTACAAATGGAGAACCCACCTCAGTTCCCTTCATCCCGGGAA
GTACATAAATGGGGAATGGAAACGAATCTCGCCCGATGTGGCGGACGGCG
ATATCTTGCGCTTCGTCTTGGATTTTCCCCAAATTGCGGGATAAATGGCC
TTCGAATGGAACCGTTCTCCGTACATTTTGCAGCGGATATTCTGGGCTTC
GCGATCAGCGAGGTCCTCGTTTCGATGGATGGGAATCTTGCGATGCCATC
TATTAACTTTCTGGTACAGAATGGCAAGTTCAACTTAGCGGAGGCAACCG
AGCTTCTTGGGGGAGAAGCAGCCGTAGGACGACGAATTGGCCTGGTACCT
GATATGTCAAAGTCCGATGAGTGTGAAAGCGTCATCCTGTGA
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protein sequence of Gchil2893.t1

>Gchil2893.t1 ID=Gchil2893.t1|Name=Gchil2893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MFQAFIIPFALCSSSNPIGHSASPTRLGPNRRIPEHGGEHSDLLEEVSKA
VEMWQIRTNSPSNWLPSNSIVRRCEVARDLHLNTLITKAGGHRYVQHMLN
LDPPSTAVKSYQEQEVREMACLLSTACQANGFPPPEERFPTRHQIRQLSP
TLANRIAAFPGRGGYGKLAEYIKSSSSTSTGDFFYSSEEQHTLGTWGIWT
STDLILKELRQHQSHPRIMPRLCSLPSSIACAIQRKGGAAQFAQQTNLIL
EKDMLKMIRFASVVRWLDQMVQTSNPNDCPYIDLVRLQMENPPQFPSSRE
VHKWGMETNLARCGGRRYLALRLGFSPNCGINGLRMEPFSVHFAADILGF
AISEVLVSMDGNLAMPSINFLVQNGKFNLAEATELLGGEAAVGRRIGLVP
DMSKSDECESVIL*
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mRNA from alignment at tig00000106_pilon:47411..48652-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2893.t1 ID=Gchil2893.t1|Name=Gchil2893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000106_pilon:47411..48652- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCAGGCATTTATCATCCCATTTGCTTTGTGCTCAAGCTCCAACCC
CATCGGGCATTCCGCGAGTCCAACAAGGCTTGGCCCGAACAGACGAATTC
CTGAACATGGAGGTGAGCATTCAGATCTTCTCGAGGAGGTCTCCAAAGCT
GTGGAGATGTGGCAAATTCGGACGAACTCTCCTTCAAACTGGCTTCCTTC
GAACTCCATTGTGCGGCGTTGTGAAGTAGCCAGAGATCTACATCTCAATA
CTCTGATCACGAAAGCGGGAGGGCATCGCTACGTTCAGCATATGCTAAAC
CTCGACCCTCCTAGTACTGCCGTAAAGAGCTATCAAGAGCAAGAGGTAAG
GGAAATGGCATGTTTATTGAGTACAGCCTGTCAGGCAAACGGTTTTCCTC
CCCCAGAAGAGCGGTTTCCAACTCGACATCAGATTAGGCAGTTATCACCG
ACTCTTGCGAATCGTATTGCGGCATTCCCGGGCCGAGGTGGTTATGGAAA
ATTAGCTGAGTACATAAAAAGCTCTTCTTCAACATCAACTGGGGACTTCT
TTTATTCAAGTGAAGAGCAGCATACATTGGGAACATGGGGTATTTGGACT
TCAACAGATTTAATCTTGAAAGAATTAAGGCAACACCAGAGTCATCCGCG
GATCATGCCTCGCTTGTGCTCTTTGCCAAGCAGCATTGCATGTGCCATTC
AGCGAAAAGGTGGCGCGGCGCAGTTTGCACAACAGACGAACTTGATTCTT
GAGAAGGACATGCTGAAGATGATCAGGTTTGCTTCTGTAGTGAGATGGTT
GGACCAAATGGTCCAGACGTCCAATCCTAATGATTGCCCGTACATCGATC
TCGTCCGTTTACAAATGGAGAACCCACCTCAGTTCCCTTCATCCCGGGAA
GTACATAAATGGGGAATGGAAACGAATCTCGCCCGATGTGGCGGACGGCG
ATATCTTGCGCTTCGTCTTGGATTTTCCCCAAATTGCGGGATAAATGGCC
TTCGAATGGAACCGTTCTCCGTACATTTTGCAGCGGATATTCTGGGCTTC
GCGATCAGCGAGGTCCTCGTTTCGATGGATGGGAATCTTGCGATGCCATC
TATTAACTTTCTGGTACAGAATGGCAAGTTCAACTTAGCGGAGGCAACCG
AGCTTCTTGGGGGAGAAGCAGCCGTAGGACGACGAATTGGCCTGGTACCT
GATATGTCAAAGTCCGATGAGTGTGAAAGCGTCATCCTGTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:47411..48652-

>Gchil2893.t1 ID=Gchil2893.t1|Name=Gchil2893.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000106_pilon:47411..48652- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCCAGGCATTTATCATCCCATTTGCTTTGTGCTCAAGCTCCAACCC
CATCGGGCATTCCGCGAGTCCAACAAGGCTTGGCCCGAACAGACGAATTC
CTGAACATGGAGGTGAGCATTCAGATCTTCTCGAGGAGGTCTCCAAAGCT
GTGGAGATGTGGCAAATTCGGACGAACTCTCCTTCAAACTGGCTTCCTTC
GAACTCCATTGTGCGGCGTTGTGAAGTAGCCAGAGATCTACATCTCAATA
CTCTGATCACGAAAGCGGGAGGGCATCGCTACGTTCAGCATATGCTAAAC
CTCGACCCTCCTAGTACTGCCGTAAAGAGCTATCAAGAGCAAGAGGTAAG
GGAAATGGCATGTTTATTGAGTACAGCCTGTCAGGCAAACGGTTTTCCTC
CCCCAGAAGAGCGGTTTCCAACTCGACATCAGATTAGGCAGTTATCACCG
ACTCTTGCGAATCGTATTGCGGCATTCCCGGGCCGAGGTGGTTATGGAAA
ATTAGCTGAGTACATAAAAAGCTCTTCTTCAACATCAACTGGGGACTTCT
TTTATTCAAGTGAAGAGCAGCATACATTGGGAACATGGGGTATTTGGACT
TCAACAGATTTAATCTTGAAAGAATTAAGGCAACACCAGAGTCATCCGCG
GATCATGCCTCGCTTGTGCTCTTTGCCAAGCAGCATTGCATGTGCCATTC
AGCGAAAAGGTGGCGCGGCGCAGTTTGCACAACAGACGAACTTGATTCTT
GAGAAGGACATGCTGAAGATGATCAGGTTTGCTTCTGTAGTGAGATGGTT
GGACCAAATGGTCCAGACGTCCAATCCTAATGATTGCCCGTACATCGATC
TCGTCCGTTTACAAATGGAGAACCCACCTCAGTTCCCTTCATCCCGGGAA
GTACATAAATGGGGAATGGAAACGAATCTCGCCCGATGTGGCGGACGGCG
ATATCTTGCGCTTCGTCTTGGATTTTCCCCAAATTGCGGGATAAATGGCC
TTCGAATGGAACCGTTCTCCGTACATTTTGCAGCGGATATTCTGGGCTTC
GCGATCAGCGAGGTCCTCGTTTCGATGGATGGGAATCTTGCGATGCCATC
TATTAACTTTCTGGTACAGAATGGCAAGTTCAACTTAGCGGAGGCAACCG
AGCTTCTTGGGGGAGAAGCAGCCGTAGGACGACGAATTGGCCTGGTACCT
GATATGTCAAAGTCCGATGAGTGTGAAAGCGTCATCCTGTGA
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