Gchil2842.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2842.t1
Unique NameGchil2842.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length560
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:878551..880535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2842Gchil2842Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 878551..880535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2842.t1Gchil2842.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 878551..880535 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2842.t1.start1Gchil2842.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 878551..878553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2842.t1.CDS1Gchil2842.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 878551..878579 +
Gchil2842.t1.CDS2Gchil2842.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 878652..879349 +
Gchil2842.t1.CDS3Gchil2842.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 879443..879881 +
Gchil2842.t1.CDS4Gchil2842.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 880022..880535 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2842.t1.exon1Gchil2842.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 878551..878579 +
Gchil2842.t1.exon2Gchil2842.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 878652..879349 +
Gchil2842.t1.exon3Gchil2842.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 879443..879881 +
Gchil2842.t1.exon4Gchil2842.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 880022..880535 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2842.t1.intron1Gchil2842.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 878580..878651 +
Gchil2842.t1.intron2Gchil2842.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 879350..879442 +
Gchil2842.t1.intron3Gchil2842.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004406_pilon 879882..880021 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2842.t1.stop1Gchil2842.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 880533..880535 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2842.t1 ID=Gchil2842.t1|Name=Gchil2842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=560bp
MYLASWHPTRNHRNAEVVEYYIPPSLSANHGGRKKRLYAVGRVFRVLIVI
TNSSPPDQLLQFSTAFCSSPLFSSISRDGSNAGSNPFQPSSEDVPSGAPS
NTAGYASQPTAQLGPYRSFSTPYTGFRSVPLPQPTVAPMPNAAYVASAGV
IRSPSRRFQRSYPPPAYFYGRYPLYNVELFAQAPWFDPVAIRDDALIQQY
VRGGYFPDGIPEHAIYSDDWASHIALPDNAIARYSTETLSEAPRTDGEGY
SYIETLVEVDVSGWRGVRGVRDAALCFQQPLLRAEFRFLRKRDIPYRDYP
GWERRTRSRLGYLVPYQMIEIDRIRRNARLGRYIRIPEHWAAIESPRGCP
VKLPPAISYIGSALVNNPFSEYWKVVYTEFIAKMAVFLLVDWFGVPADQS
ARGTRAIHHDHSPGRTASAGDFVWYDPWTRQLITSEQARFLRENPRDMPP
NQLTGYVYDATPSENGEELHEEAPGAEAELGYEDKPELAGVATSVDQSAA
AGVAQENFHGFTQQPSAVPVEDPGLDPLRQFPLDAGFPVDQVEGDRAQLL
ANLRARTSL*
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spliced messenger RNA

>Gchil2842.t1 ID=Gchil2842.t1|Name=Gchil2842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00004406_pilon:878551..880535+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtaccttgcctcctggcatcctacgcgaaaccatcggaacgccgaagt
agtagaatactacatacccccctcgttaagcgcgaaccatgggggacgca
agaagcgtttatacgcagtcggacgggtgttccgggtactcatcgtcatc
acgaattcctcgccgcccgaccaactcttacagttctcaacagcattctg
ttcctcaccgctcttcagctcgatctctcgcgatggatcgaatgccgggt
ccaacccgtttcagccctcctctgaggatgtgccttcaggggctccgtcc
aacactgctggttatgcgtcgcagcctactgctcaactcggtccataccg
ttcgttctccacaccgtacaccggattccggtcggtaccgttacctcagc
caaccgtggctccgatgccgaacgcggcttacgtcgcctctgcgggtgtg
attcgatctccttctcgtcgttttcagcggagctacccgccccctgcgta
tttctatggacgatatcctctctacaacgttgaacttttcgcgcaagcgc
cctggtttgatccagttgctatccgcgatgacgcgttgatacaacagtat
gtacgcggtgggtacttccccgacggtattccggaacacgcgatttatag
cgacgactgggcgagccatattgctttgccagacaacgcgatcgcgcgat
attcaacggaaaccttgtccgaagccccacgtaccgacggtgaaggttac
tcgtatatcgagacactcgttgaagtcgatgttagcggttggcgcggtgt
gcgcggtgtgcgtgatgcagctctctgctttcagcaacctcttctccgtg
cggagttccgcttccttcgaaagcgtgacattccctatagggattatcct
ggttgggaacgtcgtactcgatcacgtttgggctatttggtgccctatca
aatgatcgagattgaccgcatccggcggaacgcgcgcttagggcgctaca
tccgtattccggagcattgggcggcgatcgagagtcctcgtggttgccct
gtgaagctcccacctgcgatctcctacatcgggtccgcgttggttaacaa
cccgttctcggaatattggaaggtggtttataccgaatttatcgccaaga
tggccgtcttcctccttgtcgattggtttggagtgccagctgatcaatcc
gctcgcggaacccgtgcaatacaccacgaccattctcctggacgaacagc
aagtgctggagatttcgtttggtacgacccctggacgcgccagttgatca
cctccgagcaggctcgctttcttcgggagaacccacgtgacatgccaccg
aaccagcttactggatacgtgtacgatgctactccatctgagaacggaga
ggaactgcatgaggaagcgccgggagctgaggctgaactcggttacgagg
acaagccagagctggcaggcgtagcgacttccgtcgatcaatccgcagcg
gcgggagttgctcaagagaactttcatgggtttacccaacaaccgagtgc
agtgccggtcgaagatccaggcttggatccgctgaggcagtttcccttag
atgcgggctttcccgtggaccaagttgagggtgatcgcgcacagcttctt
gcgaacctgcgtgctcgcacgtctctttga
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protein sequence of Gchil2842.t1

>Gchil2842.t1 ID=Gchil2842.t1|Name=Gchil2842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=560bp
MYLASWHPTRNHRNAEVVEYYIPPSLSANHGGRKKRLYAVGRVFRVLIVI
TNSSPPDQLLQFSTAFCSSPLFSSISRDGSNAGSNPFQPSSEDVPSGAPS
NTAGYASQPTAQLGPYRSFSTPYTGFRSVPLPQPTVAPMPNAAYVASAGV
IRSPSRRFQRSYPPPAYFYGRYPLYNVELFAQAPWFDPVAIRDDALIQQY
VRGGYFPDGIPEHAIYSDDWASHIALPDNAIARYSTETLSEAPRTDGEGY
SYIETLVEVDVSGWRGVRGVRDAALCFQQPLLRAEFRFLRKRDIPYRDYP
GWERRTRSRLGYLVPYQMIEIDRIRRNARLGRYIRIPEHWAAIESPRGCP
VKLPPAISYIGSALVNNPFSEYWKVVYTEFIAKMAVFLLVDWFGVPADQS
ARGTRAIHHDHSPGRTASAGDFVWYDPWTRQLITSEQARFLRENPRDMPP
NQLTGYVYDATPSENGEELHEEAPGAEAELGYEDKPELAGVATSVDQSAA
AGVAQENFHGFTQQPSAVPVEDPGLDPLRQFPLDAGFPVDQVEGDRAQLL
ANLRARTSL*
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mRNA from alignment at tig00004406_pilon:878551..880535+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2842.t1 ID=Gchil2842.t1|Name=Gchil2842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1985bp|location=Sequence derived from alignment at tig00004406_pilon:878551..880535+ (Gracilaria chilensis NLEC103_M9 male)
atgtaccttgcctcctggcatcctacgcggtgtgtcgcttcttatcctag
cactgaccaggccactcagtaatgagttccaaacgcgactttgcgacaaa
gaaaccatcggaacgccgaagtagtagaatactacatacccccctcgtta
agcgcgaaccatgggggacgcaagaagcgtttatacgcagtcggacgggt
gttccgggtactcatcgtcatcacgaattcctcgccgcccgaccaactct
tacagttctcaacagcattctgttcctcaccgctcttcagctcgatctct
cgcgatggatcgaatgccgggtccaacccgtttcagccctcctctgagga
tgtgccttcaggggctccgtccaacactgctggttatgcgtcgcagccta
ctgctcaactcggtccataccgttcgttctccacaccgtacaccggattc
cggtcggtaccgttacctcagccaaccgtggctccgatgccgaacgcggc
ttacgtcgcctctgcgggtgtgattcgatctccttctcgtcgttttcagc
ggagctacccgccccctgcgtatttctatggacgatatcctctctacaac
gttgaacttttcgcgcaagcgccctggtttgatccagttgctatccgcga
tgacgcgttgatacaacagtatgtacgcggtgggtacttccccgacggta
ttccggaacacgcgatttatagcgacgactgggcgagccatattgctttg
ccagacaacgcgatcgcgcgatattcaacggaaaccttgtccgaagcccg
tacgcggttcaccaagctgatttaccagcgtcttcatcgattcatcagta
cggttctcctcccgcaggactgagaacttgatacctgtaaagcacgtacc
gacggtgaaggttactcgtatatcgagacactcgttgaagtcgatgttag
cggttggcgcggtgtgcgcggtgtgcgtgatgcagctctctgctttcagc
aacctcttctccgtgcggagttccgcttccttcgaaagcgtgacattccc
tatagggattatcctggttgggaacgtcgtactcgatcacgtttgggcta
tttggtgccctatcaaatgatcgagattgaccgcatccggcggaacgcgc
gcttagggcgctacatccgtattccggagcattgggcggcgatcgagagt
cctcgtggttgccctgtgaagctcccacctgcgatctcctacatcgggtc
cgcgttggttaacaacccgttctcggaatattggaaggtggtttataccg
aatttatcgccaagatggccgtcttcctcctgtaggatgcttttgatacc
tttagagtttggtacatgtcgctcacagcgcgaaagtatcgagagaactc
gatctttcccttgtcctgggatcccgtgcgaaccatgcggacttcctcca
tcttgtggatttgatcgacagtgtcgattggtttggagtgccagctgatc
aatccgctcgcggaacccgtgcaatacaccacgaccattctcctggacga
acagcaagtgctggagatttcgtttggtacgacccctggacgcgccagtt
gatcacctccgagcaggctcgctttcttcgggagaacccacgtgacatgc
caccgaaccagcttactggatacgtgtacgatgctactccatctgagaac
ggagaggaactgcatgaggaagcgccgggagctgaggctgaactcggtta
cgaggacaagccagagctggcaggcgtagcgacttccgtcgatcaatccg
cagcggcgggagttgctcaagagaactttcatgggtttacccaacaaccg
agtgcagtgccggtcgaagatccaggcttggatccgctgaggcagtttcc
cttagatgcgggctttcccgtggaccaagttgagggtgatcgcgcacagc
ttcttgcgaacctgcgtgctcgcacgtctctttga
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Coding sequence (CDS) from alignment at tig00004406_pilon:878551..880535+

>Gchil2842.t1 ID=Gchil2842.t1|Name=Gchil2842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00004406_pilon:878551..880535+ (Gracilaria chilensis NLEC103_M9 male)
atgtaccttgcctcctggcatcctacgcgaaaccatcggaacgccgaagt
agtagaatactacatacccccctcgttaagcgcgaaccatgggggacgca
agaagcgtttatacgcagtcggacgggtgttccgggtactcatcgtcatc
acgaattcctcgccgcccgaccaactcttacagttctcaacagcattctg
ttcctcaccgctcttcagctcgatctctcgcgatggatcgaatgccgggt
ccaacccgtttcagccctcctctgaggatgtgccttcaggggctccgtcc
aacactgctggttatgcgtcgcagcctactgctcaactcggtccataccg
ttcgttctccacaccgtacaccggattccggtcggtaccgttacctcagc
caaccgtggctccgatgccgaacgcggcttacgtcgcctctgcgggtgtg
attcgatctccttctcgtcgttttcagcggagctacccgccccctgcgta
tttctatggacgatatcctctctacaacgttgaacttttcgcgcaagcgc
cctggtttgatccagttgctatccgcgatgacgcgttgatacaacagtat
gtacgcggtgggtacttccccgacggtattccggaacacgcgatttatag
cgacgactgggcgagccatattgctttgccagacaacgcgatcgcgcgat
attcaacggaaaccttgtccgaagccccacgtaccgacggtgaaggttac
tcgtatatcgagacactcgttgaagtcgatgttagcggttggcgcggtgt
gcgcggtgtgcgtgatgcagctctctgctttcagcaacctcttctccgtg
cggagttccgcttccttcgaaagcgtgacattccctatagggattatcct
ggttgggaacgtcgtactcgatcacgtttgggctatttggtgccctatca
aatgatcgagattgaccgcatccggcggaacgcgcgcttagggcgctaca
tccgtattccggagcattgggcggcgatcgagagtcctcgtggttgccct
gtgaagctcccacctgcgatctcctacatcgggtccgcgttggttaacaa
cccgttctcggaatattggaaggtggtttataccgaatttatcgccaaga
tggccgtcttcctccttgtcgattggtttggagtgccagctgatcaatcc
gctcgcggaacccgtgcaatacaccacgaccattctcctggacgaacagc
aagtgctggagatttcgtttggtacgacccctggacgcgccagttgatca
cctccgagcaggctcgctttcttcgggagaacccacgtgacatgccaccg
aaccagcttactggatacgtgtacgatgctactccatctgagaacggaga
ggaactgcatgaggaagcgccgggagctgaggctgaactcggttacgagg
acaagccagagctggcaggcgtagcgacttccgtcgatcaatccgcagcg
gcgggagttgctcaagagaactttcatgggtttacccaacaaccgagtgc
agtgccggtcgaagatccaggcttggatccgctgaggcagtttcccttag
atgcgggctttcccgtggaccaagttgagggtgatcgcgcacagcttctt
gcgaacctgcgtgctcgcacgtctctttga
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