Gchil2784.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2784.t1
Unique NameGchil2784.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:497990..498400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2784Gchil2784Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 497990..498400 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2784.t1.stop1Gchil2784.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 497990..497992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2784.t1.CDS1Gchil2784.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 497990..498400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2784.t1.exon1Gchil2784.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 497990..498400 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2784.t1.start1Gchil2784.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 498398..498400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2784.t1Gchil2784.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 497990..498400 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2784.t1 ID=Gchil2784.t1|Name=Gchil2784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=137bp
MCERDATGNNDPKDKQQSTAARRLPVTNSEPSKRRLVRNKADVTSDVYAD
ARAGDMVGAPEVGTGLGPRRGRNEKKVTRAAAIQKSQSFADAWAEQNQGR
VDVWLIIGAITLLTPLLILAWAVATGVIPTGGLFDD*
back to top

spliced messenger RNA

>Gchil2784.t1 ID=Gchil2784.t1|Name=Gchil2784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00004406_pilon:497990..498400- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAGCGCGACGCGACCGGCAACAACGACCCCAAAGACAAGCAGCA
GAGCACAGCCGCCAGAAGATTGCCAGTCACAAATAGCGAGCCATCCAAGC
GACGCTTAGTACGAAATAAGGCCGATGTGACGTCAGATGTGTACGCGGAC
GCGCGCGCCGGCGATATGGTGGGCGCACCCGAGGTGGGTACCGGGTTGGG
ACCGCGCCGCGGACGTAATGAAAAGAAGGTGACGCGTGCGGCCGCTATAC
AAAAGTCACAGAGCTTTGCCGACGCGTGGGCGGAACAGAATCAGGGTCGC
GTGGACGTGTGGCTCATCATTGGCGCCATCACGCTACTGACGCCGTTGCT
CATTCTGGCGTGGGCTGTTGCCACGGGCGTCATTCCCACCGGTGGACTGT
TCGACGACTAG
back to top

protein sequence of Gchil2784.t1

>Gchil2784.t1 ID=Gchil2784.t1|Name=Gchil2784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=137bp
MCERDATGNNDPKDKQQSTAARRLPVTNSEPSKRRLVRNKADVTSDVYAD
ARAGDMVGAPEVGTGLGPRRGRNEKKVTRAAAIQKSQSFADAWAEQNQGR
VDVWLIIGAITLLTPLLILAWAVATGVIPTGGLFDD*
back to top

mRNA from alignment at tig00004406_pilon:497990..498400-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2784.t1 ID=Gchil2784.t1|Name=Gchil2784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00004406_pilon:497990..498400- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGAGCGCGACGCGACCGGCAACAACGACCCCAAAGACAAGCAGCA
GAGCACAGCCGCCAGAAGATTGCCAGTCACAAATAGCGAGCCATCCAAGC
GACGCTTAGTACGAAATAAGGCCGATGTGACGTCAGATGTGTACGCGGAC
GCGCGCGCCGGCGATATGGTGGGCGCACCCGAGGTGGGTACCGGGTTGGG
ACCGCGCCGCGGACGTAATGAAAAGAAGGTGACGCGTGCGGCCGCTATAC
AAAAGTCACAGAGCTTTGCCGACGCGTGGGCGGAACAGAATCAGGGTCGC
GTGGACGTGTGGCTCATCATTGGCGCCATCACGCTACTGACGCCGTTGCT
CATTCTGGCGTGGGCTGTTGCCACGGGCGTCATTCCCACCGGTGGACTGT
TCGACGACTAG
back to top

Coding sequence (CDS) from alignment at tig00004406_pilon:497990..498400-

>Gchil2784.t1 ID=Gchil2784.t1|Name=Gchil2784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00004406_pilon:497990..498400- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGAGCGCGACGCGACCGGCAACAACGACCCCAAAGACAAGCAGCA
GAGCACAGCCGCCAGAAGATTGCCAGTCACAAATAGCGAGCCATCCAAGC
GACGCTTAGTACGAAATAAGGCCGATGTGACGTCAGATGTGTACGCGGAC
GCGCGCGCCGGCGATATGGTGGGCGCACCCGAGGTGGGTACCGGGTTGGG
ACCGCGCCGCGGACGTAATGAAAAGAAGGTGACGCGTGCGGCCGCTATAC
AAAAGTCACAGAGCTTTGCCGACGCGTGGGCGGAACAGAATCAGGGTCGC
GTGGACGTGTGGCTCATCATTGGCGCCATCACGCTACTGACGCCGTTGCT
CATTCTGGCGTGGGCTGTTGCCACGGGCGTCATTCCCACCGGTGGACTGT
TCGACGACTAG
back to top