Gchil2749.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2749.t1
Unique NameGchil2749.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:335846..337417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2749Gchil2749Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 335846..337417 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2749.t1.stop1Gchil2749.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 335846..335848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2749.t1.CDS1Gchil2749.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 335846..337417 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2749.t1.exon1Gchil2749.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 335846..337417 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2749.t1.start1Gchil2749.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 337415..337417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2749.t1Gchil2749.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 335846..337417 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2749.t1 ID=Gchil2749.t1|Name=Gchil2749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=524bp
MVPHALRYCTLLFLAFSADGRETSPNSSLLFEQDQFARDTFDANLISPGL
FVVNENEENLSNIKLIRSIDEMLGQIKESTDRKLFPTSTAWKFFRSNLAG
HIDNFVIRSRALELHYLYANSSGLIPSTIIVLRRGNSKDRLPRRAYSTKD
EVGLFPMPIIMHKKANGTFEIPSPFQDFSTALALGNDTFGRLGVDCSVGA
PDQTVDIAGFTEARREDCMGAVAPISDWSECWHANNNNCGRKKFTKPCYR
SSWLDYDRRAFCAYLRIRPLDKNDTFMDLLEEANSWSFDPPIGSGFPWQQ
ALLISKSRKNKNSVQENAMEEARNQLDRTSDAVDQLIARIAISEEKSLSP
RPTSIDLMLVCVAVLSALLAIDAVVIYKLVSRTFTRWMKNKTSSVFLDGF
TIFFVAVTTSSPALITAAVVVYQETKIGTLNMLRGGNGWHARHILESLTG
ENIWLIRRIIITMDVSTSYGVRPLYIAVPLILAVLDFSVELCVLLKYHSH
KYERQPGEALQQEIDSSLDSVTM*
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spliced messenger RNA

>Gchil2749.t1 ID=Gchil2749.t1|Name=Gchil2749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00004406_pilon:335846..337417- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCTCATGCATTGCGCTATTGCACTTTACTTTTCTTGGCCTTCAG
CGCAGATGGACGTGAAACATCGCCAAACTCATCTTTGCTTTTTGAACAGG
ACCAATTTGCCCGTGACACGTTTGATGCCAATTTAATATCCCCTGGTCTC
TTTGTAGTCAACGAAAATGAAGAAAACCTTTCCAACATAAAGTTAATTCG
AAGCATTGATGAAATGCTTGGCCAAATAAAAGAGTCCACCGACAGAAAAC
TCTTTCCAACTTCAACAGCTTGGAAATTCTTCCGCTCCAATCTGGCCGGC
CACATTGATAACTTCGTCATACGATCCAGAGCCTTGGAACTCCACTACCT
TTACGCAAACTCCTCCGGCCTTATACCTTCAACCATCATTGTGCTGAGGC
GCGGAAACAGCAAGGATAGGTTGCCGCGACGTGCTTACTCGACGAAAGAT
GAGGTAGGTCTATTCCCAATGCCAATAATCATGCATAAGAAAGCAAACGG
AACATTTGAGATTCCTTCTCCATTTCAAGACTTTTCAACCGCTTTAGCTC
TTGGAAATGATACATTCGGCCGTCTTGGGGTTGACTGCTCCGTGGGTGCT
CCAGATCAGACAGTCGACATTGCTGGCTTCACGGAGGCGAGACGTGAAGA
TTGTATGGGTGCCGTGGCACCAATATCCGATTGGAGTGAATGTTGGCATG
CAAACAACAATAATTGTGGACGAAAAAAGTTTACGAAACCTTGCTATCGC
AGTAGCTGGCTCGATTACGACCGAAGGGCTTTTTGCGCTTACCTTCGAAT
CCGTCCTTTAGACAAAAACGATACTTTCATGGACTTGTTGGAAGAAGCTA
ATTCCTGGAGTTTTGATCCACCGATTGGCTCCGGATTTCCATGGCAGCAA
GCACTTCTTATTTCGAAAAGTAGGAAAAATAAAAATAGCGTGCAAGAAAA
TGCAATGGAAGAGGCACGGAACCAACTGGATAGAACCAGCGACGCCGTTG
ACCAGTTGATAGCTCGTATTGCTATTTCAGAAGAAAAATCTCTTTCTCCC
CGACCCACGAGCATTGACCTCATGTTGGTGTGTGTAGCAGTGCTCTCTGC
ATTACTCGCGATTGATGCTGTCGTTATATACAAACTCGTGTCGCGGACTT
TTACGAGATGGATGAAGAACAAAACGAGTTCTGTCTTTTTGGACGGCTTC
ACTATTTTTTTTGTGGCAGTGACTACATCTTCGCCGGCACTTATAACTGC
AGCCGTCGTGGTTTACCAGGAGACGAAAATAGGAACTTTAAACATGTTGC
GGGGCGGAAATGGATGGCATGCGCGTCATATTTTGGAATCTCTCACCGGT
GAGAATATTTGGTTGATTCGGAGGATTATTATCACTATGGATGTCTCAAC
GAGCTACGGAGTGCGCCCTCTTTACATCGCCGTCCCCCTGATCCTCGCAG
TTCTTGACTTCTCCGTGGAACTGTGTGTGTTGCTTAAATACCACAGCCAC
AAATACGAACGCCAACCTGGAGAGGCTTTGCAGCAGGAAATTGATTCTTC
TTTGGACAGTGTTACAATGTAA
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protein sequence of Gchil2749.t1

>Gchil2749.t1 ID=Gchil2749.t1|Name=Gchil2749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=524bp
MVPHALRYCTLLFLAFSADGRETSPNSSLLFEQDQFARDTFDANLISPGL
FVVNENEENLSNIKLIRSIDEMLGQIKESTDRKLFPTSTAWKFFRSNLAG
HIDNFVIRSRALELHYLYANSSGLIPSTIIVLRRGNSKDRLPRRAYSTKD
EVGLFPMPIIMHKKANGTFEIPSPFQDFSTALALGNDTFGRLGVDCSVGA
PDQTVDIAGFTEARREDCMGAVAPISDWSECWHANNNNCGRKKFTKPCYR
SSWLDYDRRAFCAYLRIRPLDKNDTFMDLLEEANSWSFDPPIGSGFPWQQ
ALLISKSRKNKNSVQENAMEEARNQLDRTSDAVDQLIARIAISEEKSLSP
RPTSIDLMLVCVAVLSALLAIDAVVIYKLVSRTFTRWMKNKTSSVFLDGF
TIFFVAVTTSSPALITAAVVVYQETKIGTLNMLRGGNGWHARHILESLTG
ENIWLIRRIIITMDVSTSYGVRPLYIAVPLILAVLDFSVELCVLLKYHSH
KYERQPGEALQQEIDSSLDSVTM*
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mRNA from alignment at tig00004406_pilon:335846..337417-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2749.t1 ID=Gchil2749.t1|Name=Gchil2749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00004406_pilon:335846..337417- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACCTCATGCATTGCGCTATTGCACTTTACTTTTCTTGGCCTTCAG
CGCAGATGGACGTGAAACATCGCCAAACTCATCTTTGCTTTTTGAACAGG
ACCAATTTGCCCGTGACACGTTTGATGCCAATTTAATATCCCCTGGTCTC
TTTGTAGTCAACGAAAATGAAGAAAACCTTTCCAACATAAAGTTAATTCG
AAGCATTGATGAAATGCTTGGCCAAATAAAAGAGTCCACCGACAGAAAAC
TCTTTCCAACTTCAACAGCTTGGAAATTCTTCCGCTCCAATCTGGCCGGC
CACATTGATAACTTCGTCATACGATCCAGAGCCTTGGAACTCCACTACCT
TTACGCAAACTCCTCCGGCCTTATACCTTCAACCATCATTGTGCTGAGGC
GCGGAAACAGCAAGGATAGGTTGCCGCGACGTGCTTACTCGACGAAAGAT
GAGGTAGGTCTATTCCCAATGCCAATAATCATGCATAAGAAAGCAAACGG
AACATTTGAGATTCCTTCTCCATTTCAAGACTTTTCAACCGCTTTAGCTC
TTGGAAATGATACATTCGGCCGTCTTGGGGTTGACTGCTCCGTGGGTGCT
CCAGATCAGACAGTCGACATTGCTGGCTTCACGGAGGCGAGACGTGAAGA
TTGTATGGGTGCCGTGGCACCAATATCCGATTGGAGTGAATGTTGGCATG
CAAACAACAATAATTGTGGACGAAAAAAGTTTACGAAACCTTGCTATCGC
AGTAGCTGGCTCGATTACGACCGAAGGGCTTTTTGCGCTTACCTTCGAAT
CCGTCCTTTAGACAAAAACGATACTTTCATGGACTTGTTGGAAGAAGCTA
ATTCCTGGAGTTTTGATCCACCGATTGGCTCCGGATTTCCATGGCAGCAA
GCACTTCTTATTTCGAAAAGTAGGAAAAATAAAAATAGCGTGCAAGAAAA
TGCAATGGAAGAGGCACGGAACCAACTGGATAGAACCAGCGACGCCGTTG
ACCAGTTGATAGCTCGTATTGCTATTTCAGAAGAAAAATCTCTTTCTCCC
CGACCCACGAGCATTGACCTCATGTTGGTGTGTGTAGCAGTGCTCTCTGC
ATTACTCGCGATTGATGCTGTCGTTATATACAAACTCGTGTCGCGGACTT
TTACGAGATGGATGAAGAACAAAACGAGTTCTGTCTTTTTGGACGGCTTC
ACTATTTTTTTTGTGGCAGTGACTACATCTTCGCCGGCACTTATAACTGC
AGCCGTCGTGGTTTACCAGGAGACGAAAATAGGAACTTTAAACATGTTGC
GGGGCGGAAATGGATGGCATGCGCGTCATATTTTGGAATCTCTCACCGGT
GAGAATATTTGGTTGATTCGGAGGATTATTATCACTATGGATGTCTCAAC
GAGCTACGGAGTGCGCCCTCTTTACATCGCCGTCCCCCTGATCCTCGCAG
TTCTTGACTTCTCCGTGGAACTGTGTGTGTTGCTTAAATACCACAGCCAC
AAATACGAACGCCAACCTGGAGAGGCTTTGCAGCAGGAAATTGATTCTTC
TTTGGACAGTGTTACAATGTAA
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Coding sequence (CDS) from alignment at tig00004406_pilon:335846..337417-

>Gchil2749.t1 ID=Gchil2749.t1|Name=Gchil2749.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00004406_pilon:335846..337417- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACCTCATGCATTGCGCTATTGCACTTTACTTTTCTTGGCCTTCAG
CGCAGATGGACGTGAAACATCGCCAAACTCATCTTTGCTTTTTGAACAGG
ACCAATTTGCCCGTGACACGTTTGATGCCAATTTAATATCCCCTGGTCTC
TTTGTAGTCAACGAAAATGAAGAAAACCTTTCCAACATAAAGTTAATTCG
AAGCATTGATGAAATGCTTGGCCAAATAAAAGAGTCCACCGACAGAAAAC
TCTTTCCAACTTCAACAGCTTGGAAATTCTTCCGCTCCAATCTGGCCGGC
CACATTGATAACTTCGTCATACGATCCAGAGCCTTGGAACTCCACTACCT
TTACGCAAACTCCTCCGGCCTTATACCTTCAACCATCATTGTGCTGAGGC
GCGGAAACAGCAAGGATAGGTTGCCGCGACGTGCTTACTCGACGAAAGAT
GAGGTAGGTCTATTCCCAATGCCAATAATCATGCATAAGAAAGCAAACGG
AACATTTGAGATTCCTTCTCCATTTCAAGACTTTTCAACCGCTTTAGCTC
TTGGAAATGATACATTCGGCCGTCTTGGGGTTGACTGCTCCGTGGGTGCT
CCAGATCAGACAGTCGACATTGCTGGCTTCACGGAGGCGAGACGTGAAGA
TTGTATGGGTGCCGTGGCACCAATATCCGATTGGAGTGAATGTTGGCATG
CAAACAACAATAATTGTGGACGAAAAAAGTTTACGAAACCTTGCTATCGC
AGTAGCTGGCTCGATTACGACCGAAGGGCTTTTTGCGCTTACCTTCGAAT
CCGTCCTTTAGACAAAAACGATACTTTCATGGACTTGTTGGAAGAAGCTA
ATTCCTGGAGTTTTGATCCACCGATTGGCTCCGGATTTCCATGGCAGCAA
GCACTTCTTATTTCGAAAAGTAGGAAAAATAAAAATAGCGTGCAAGAAAA
TGCAATGGAAGAGGCACGGAACCAACTGGATAGAACCAGCGACGCCGTTG
ACCAGTTGATAGCTCGTATTGCTATTTCAGAAGAAAAATCTCTTTCTCCC
CGACCCACGAGCATTGACCTCATGTTGGTGTGTGTAGCAGTGCTCTCTGC
ATTACTCGCGATTGATGCTGTCGTTATATACAAACTCGTGTCGCGGACTT
TTACGAGATGGATGAAGAACAAAACGAGTTCTGTCTTTTTGGACGGCTTC
ACTATTTTTTTTGTGGCAGTGACTACATCTTCGCCGGCACTTATAACTGC
AGCCGTCGTGGTTTACCAGGAGACGAAAATAGGAACTTTAAACATGTTGC
GGGGCGGAAATGGATGGCATGCGCGTCATATTTTGGAATCTCTCACCGGT
GAGAATATTTGGTTGATTCGGAGGATTATTATCACTATGGATGTCTCAAC
GAGCTACGGAGTGCGCCCTCTTTACATCGCCGTCCCCCTGATCCTCGCAG
TTCTTGACTTCTCCGTGGAACTGTGTGTGTTGCTTAAATACCACAGCCAC
AAATACGAACGCCAACCTGGAGAGGCTTTGCAGCAGGAAATTGATTCTTC
TTTGGACAGTGTTACAATGTAA
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