Gchil2699.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2699.t1
Unique NameGchil2699.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:325990..326335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008791158.1
PFAMsSPC12
Max annot lvl35493|Streptophyta
KEGG koko:K12946
KEGG Pathwayko03060,map03060
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016485,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368
Evalue5.8e-06
EggNOG OGsKOG4112@1|root,KOG4112@2759|Eukaryota,37VYY@33090|Viridiplantae,3GK39@35493|Streptophyta,3M1CR@4447|Liliopsida
Descriptionsignal peptidase complex subunit 1
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2699Gchil2699Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 325990..326335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2699.t1Gchil2699.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 325990..326335 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2699.t1.stop1Gchil2699.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 325990..325992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2699.t1.CDS1Gchil2699.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 325990..326088 -
Gchil2699.t1.CDS2Gchil2699.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 326186..326335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2699.t1.exon1Gchil2699.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 325990..326088 -
Gchil2699.t1.exon2Gchil2699.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 326186..326335 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2699.t1.intron1Gchil2699.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000165_pilon 326089..326185 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2699.t1.start1Gchil2699.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 326333..326335 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2699.t1 ID=Gchil2699.t1|Name=Gchil2699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=83bp
MDLRGQYRSEKAFLLIMWPVTLLAALLTFALDRVNVMFFTFAAGLGLSAL
ICLPEWPFFNRNALAFVHRSHHSSPHHSSPQH*
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spliced messenger RNA

>Gchil2699.t1 ID=Gchil2699.t1|Name=Gchil2699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000165_pilon:325990..326335- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTCAGGGGGCAGTACCGCAGCGAGAAGGCGTTTCTTCTCATCAT
GTGGCCCGTCACCCTCCTGGCTGCGCTGCTCACCTTTGCTCTTGACCGCG
TCAACGTCATGTTCTTCACGTTTGCTGCCGGGCTCGGCCTCAGCGCCTTG
ATCTGTCTGCCCGAGTGGCCCTTCTTCAACAGAAATGCGCTCGCTTTCGT
GCATCGCTCGCACCACTCGTCTCCGCACCACTCGTCTCCCCAACACTGA
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protein sequence of Gchil2699.t1

>Gchil2699.t1 ID=Gchil2699.t1|Name=Gchil2699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=83bp
MDLRGQYRSEKAFLLIMWPVTLLAALLTFALDRVNVMFFTFAAGLGLSAL
ICLPEWPFFNRNALAFVHRSHHSSPHHSSPQH*
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mRNA from alignment at tig00000165_pilon:325990..326335-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2699.t1 ID=Gchil2699.t1|Name=Gchil2699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=346bp|location=Sequence derived from alignment at tig00000165_pilon:325990..326335- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTCAGGGGGCAGTACCGCAGCGAGAAGGCGTTTCTTCTCATCAT
GTGGCCCGTCACCCTCCTGGCTGCGCTGCTCACCTTTGCTCTTGACCGCG
TCAACGTCATGTTCTTCACGTTTGCTGCCGGGCTCGGCCTCAGCGCCTTG
GTAAGTACTACTCCGTCCCTCTCTCTCTCCTCTCTCTCGCGCTCGCTCGC
TACTTGTTCCGCATTACTCACCGTCCGTCCTCCGCCCCCACCCGCAGATC
TGTCTGCCCGAGTGGCCCTTCTTCAACAGAAATGCGCTCGCTTTCGTGCA
TCGCTCGCACCACTCGTCTCCGCACCACTCGTCTCCCCAACACTGA
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Coding sequence (CDS) from alignment at tig00000165_pilon:325990..326335-

>Gchil2699.t1 ID=Gchil2699.t1|Name=Gchil2699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000165_pilon:325990..326335- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCTCAGGGGGCAGTACCGCAGCGAGAAGGCGTTTCTTCTCATCAT
GTGGCCCGTCACCCTCCTGGCTGCGCTGCTCACCTTTGCTCTTGACCGCG
TCAACGTCATGTTCTTCACGTTTGCTGCCGGGCTCGGCCTCAGCGCCTTG
ATCTGTCTGCCCGAGTGGCCCTTCTTCAACAGAAATGCGCTCGCTTTCGT
GCATCGCTCGCACCACTCGTCTCCGCACCACTCGTCTCCCCAACACTGA
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