Gchil2691.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2691.t1
Unique NameGchil2691.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000165_piloncontigtig00000165_pilon:171203..172579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2691Gchil2691Gracilaria chilensis NLEC103_M9 malegenetig00000165_pilon 171203..172579 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2691.t1.start1Gchil2691.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000165_pilon 171203..171205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2691.t1.CDS1Gchil2691.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000165_pilon 171203..172579 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2691.t1.exon1Gchil2691.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000165_pilon 171203..172579 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2691.t1.stop1Gchil2691.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000165_pilon 172577..172579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2691.t1Gchil2691.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000165_pilon 171203..172579 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2691.t1 ID=Gchil2691.t1|Name=Gchil2691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp
MVAGAVAAVAAVTIQFVRQALAPASFIRSSQSAQLPAPVITVCLSQRGVP
FSRLQMFDFVDSQQRNFNGTVPELDFSSQRIRPFKDVVERFWDNPADEDC
PRVVGDYFPFPLRTLNAIAAGRASTRCRQCYRVGSKHRTVVNDTAFEKSA
VLNMYTDNYFLQCMKSQAGLDDDSLEFLHSLIHQNLPDMLRLGILSAANR
SLPQLAVRDVRRISWQQACNIFYFAYFPKKLNRVDPTVDVRYSYDGRRWS
RTGRGPYFEPKVQHNFLPEESLQMFVSTNSTTRPGHLAPQHDVILIGPDT
QTFATFRPIVVYGTDRYDISSSTSALRTDRVVPRFGYWLRYKIFYNYNRF
VVDEYYRESTYPAGQWLVDLTGYASLFTGASVFSLLLLPLLRAVRRREKA
RLLRSRPEVYVWRRARLQDGVSADGLLVSPDDSDLDSDSDYDAFGTRIGS
VLLPGFNV*
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spliced messenger RNA

>Gchil2691.t1 ID=Gchil2691.t1|Name=Gchil2691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000165_pilon:171203..172579+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGgtggccggcgccgtcgccgccgtcgccgccgtcaccatcCAGTTCGT
GCGCCAGGCGCTGGCGCCCGCCTCCTTCATCCGTTCCTCGCAGAGCGCAC
AGCTCCCGGCCCCCGTCATCACCGTGTGTCTGAGCCAGCGCGGCGTGCCC
TTCTCGCGCCTGCAGATGTTCGACTTTGTCGACTCGCAGCAGCGCAACTT
TAACGGCACCGTGCCCGAGCTCGACTTCAGCTCGCAGCGCATCCGCCCCT
TCAAGGACGTCGTCGAGCGCTTTTGGGACAACCCGGCCGACGAAGACTGC
CCCCGCGTCGTTGGCGACTACTTCCCCTTCCCGCTGCGCACCCTCAACGC
CATTGCCGCCGGCCGCGCCTCCACCCGCTGCCGCCAGTGCTACCGCGTCG
GAAGCAAGCACCGCACCGTCGTCAACGACACCGCCTTTGAGAAGAGCGCC
GTGCTCAACATGTACACCGACAACTACTTTTTGCAGTGCATGAAGAGCCA
GGCCGGCCTCGACGACGACAGCCTCGAGTTTCTGCACTCGCTCATCCACC
AAAACCTCCCCGACATGCTCCGTCTCGGCATTCTGTCCGCTGCAAACCGC
TCGCTGCCACAGCTCGCCGTGCGCGACGTGCGCCGAATCAGCTGGCAGCA
GGCGTGCAACATCTTCTACTTTGCGTACTTTCCGAAAAAGCTCAACCGCG
TTGATCCCACCGTCGACGTGCGCTACAGCTACGACGGCCGCCGCTGGAGT
CGCACCGGCCGCGGCCCGTACTTTGAGCCCAAGGTGCAGCACAACTTCTT
GCCGGAGGAGTCGTTGCAGATGTTTGTGAGCACCAACTCCACCACGCGCC
CCGGCCATCTTGCGCCGCAGCACGACGTCATTCTCATCGGCCCGGACACG
CAGACGTTTGCCACCTTCCGCCCCATCGTCGTGTACGGCACCGATCGCTA
CGACATCAGCTCGTCCACGTCTGCGCTGCGCACGGACCGCGTGGTGCCGC
GCTTTGGCTACTGGTTGCGCTACAAGATTTTCTACAACTACAACCGCTTT
GTCGTGGACGAATACTACCGCGAGTCCACGTACCCCGCGGGGCAGTGGCT
TGTGGACCTTACCGGCTACGCGTCGCTGTTCACGGGCGCCAGCGTGTTTT
CgctgctgttgctgccgctgttgcgcgctgtgcgccgccgcGAGAAGGCG
CGCCTGCTCAGGAGCCGCCCGGAGGTGTATGTGTGGCGGCGCGCGCGCCT
GCAGGACGGCGTGTCGGCCGATGGACTGTTGGTGTCGCCCGAcgactccg
acttggactccgactccgactacgaTGCGTTTGGCACGCGCATTGGCTCC
GTCTTGCTGCCGGGCTTCAACGTGTGA
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protein sequence of Gchil2691.t1

>Gchil2691.t1 ID=Gchil2691.t1|Name=Gchil2691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=459bp
MVAGAVAAVAAVTIQFVRQALAPASFIRSSQSAQLPAPVITVCLSQRGVP
FSRLQMFDFVDSQQRNFNGTVPELDFSSQRIRPFKDVVERFWDNPADEDC
PRVVGDYFPFPLRTLNAIAAGRASTRCRQCYRVGSKHRTVVNDTAFEKSA
VLNMYTDNYFLQCMKSQAGLDDDSLEFLHSLIHQNLPDMLRLGILSAANR
SLPQLAVRDVRRISWQQACNIFYFAYFPKKLNRVDPTVDVRYSYDGRRWS
RTGRGPYFEPKVQHNFLPEESLQMFVSTNSTTRPGHLAPQHDVILIGPDT
QTFATFRPIVVYGTDRYDISSSTSALRTDRVVPRFGYWLRYKIFYNYNRF
VVDEYYRESTYPAGQWLVDLTGYASLFTGASVFSLLLLPLLRAVRRREKA
RLLRSRPEVYVWRRARLQDGVSADGLLVSPDDSDLDSDSDYDAFGTRIGS
VLLPGFNV*
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mRNA from alignment at tig00000165_pilon:171203..172579+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2691.t1 ID=Gchil2691.t1|Name=Gchil2691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000165_pilon:171203..172579+ (Gracilaria chilensis NLEC103_M9 male)
ATGgtggccggcgccgtcgccgccgtcgccgccgtcaccatcCAGTTCGT
GCGCCAGGCGCTGGCGCCCGCCTCCTTCATCCGTTCCTCGCAGAGCGCAC
AGCTCCCGGCCCCCGTCATCACCGTGTGTCTGAGCCAGCGCGGCGTGCCC
TTCTCGCGCCTGCAGATGTTCGACTTTGTCGACTCGCAGCAGCGCAACTT
TAACGGCACCGTGCCCGAGCTCGACTTCAGCTCGCAGCGCATCCGCCCCT
TCAAGGACGTCGTCGAGCGCTTTTGGGACAACCCGGCCGACGAAGACTGC
CCCCGCGTCGTTGGCGACTACTTCCCCTTCCCGCTGCGCACCCTCAACGC
CATTGCCGCCGGCCGCGCCTCCACCCGCTGCCGCCAGTGCTACCGCGTCG
GAAGCAAGCACCGCACCGTCGTCAACGACACCGCCTTTGAGAAGAGCGCC
GTGCTCAACATGTACACCGACAACTACTTTTTGCAGTGCATGAAGAGCCA
GGCCGGCCTCGACGACGACAGCCTCGAGTTTCTGCACTCGCTCATCCACC
AAAACCTCCCCGACATGCTCCGTCTCGGCATTCTGTCCGCTGCAAACCGC
TCGCTGCCACAGCTCGCCGTGCGCGACGTGCGCCGAATCAGCTGGCAGCA
GGCGTGCAACATCTTCTACTTTGCGTACTTTCCGAAAAAGCTCAACCGCG
TTGATCCCACCGTCGACGTGCGCTACAGCTACGACGGCCGCCGCTGGAGT
CGCACCGGCCGCGGCCCGTACTTTGAGCCCAAGGTGCAGCACAACTTCTT
GCCGGAGGAGTCGTTGCAGATGTTTGTGAGCACCAACTCCACCACGCGCC
CCGGCCATCTTGCGCCGCAGCACGACGTCATTCTCATCGGCCCGGACACG
CAGACGTTTGCCACCTTCCGCCCCATCGTCGTGTACGGCACCGATCGCTA
CGACATCAGCTCGTCCACGTCTGCGCTGCGCACGGACCGCGTGGTGCCGC
GCTTTGGCTACTGGTTGCGCTACAAGATTTTCTACAACTACAACCGCTTT
GTCGTGGACGAATACTACCGCGAGTCCACGTACCCCGCGGGGCAGTGGCT
TGTGGACCTTACCGGCTACGCGTCGCTGTTCACGGGCGCCAGCGTGTTTT
CgctgctgttgctgccgctgttgcgcgctgtgcgccgccgcGAGAAGGCG
CGCCTGCTCAGGAGCCGCCCGGAGGTGTATGTGTGGCGGCGCGCGCGCCT
GCAGGACGGCGTGTCGGCCGATGGACTGTTGGTGTCGCCCGAcgactccg
acttggactccgactccgactacgaTGCGTTTGGCACGCGCATTGGCTCC
GTCTTGCTGCCGGGCTTCAACGTGTGA
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Coding sequence (CDS) from alignment at tig00000165_pilon:171203..172579+

>Gchil2691.t1 ID=Gchil2691.t1|Name=Gchil2691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000165_pilon:171203..172579+ (Gracilaria chilensis NLEC103_M9 male)
ATGgtggccggcgccgtcgccgccgtcgccgccgtcaccatcCAGTTCGT
GCGCCAGGCGCTGGCGCCCGCCTCCTTCATCCGTTCCTCGCAGAGCGCAC
AGCTCCCGGCCCCCGTCATCACCGTGTGTCTGAGCCAGCGCGGCGTGCCC
TTCTCGCGCCTGCAGATGTTCGACTTTGTCGACTCGCAGCAGCGCAACTT
TAACGGCACCGTGCCCGAGCTCGACTTCAGCTCGCAGCGCATCCGCCCCT
TCAAGGACGTCGTCGAGCGCTTTTGGGACAACCCGGCCGACGAAGACTGC
CCCCGCGTCGTTGGCGACTACTTCCCCTTCCCGCTGCGCACCCTCAACGC
CATTGCCGCCGGCCGCGCCTCCACCCGCTGCCGCCAGTGCTACCGCGTCG
GAAGCAAGCACCGCACCGTCGTCAACGACACCGCCTTTGAGAAGAGCGCC
GTGCTCAACATGTACACCGACAACTACTTTTTGCAGTGCATGAAGAGCCA
GGCCGGCCTCGACGACGACAGCCTCGAGTTTCTGCACTCGCTCATCCACC
AAAACCTCCCCGACATGCTCCGTCTCGGCATTCTGTCCGCTGCAAACCGC
TCGCTGCCACAGCTCGCCGTGCGCGACGTGCGCCGAATCAGCTGGCAGCA
GGCGTGCAACATCTTCTACTTTGCGTACTTTCCGAAAAAGCTCAACCGCG
TTGATCCCACCGTCGACGTGCGCTACAGCTACGACGGCCGCCGCTGGAGT
CGCACCGGCCGCGGCCCGTACTTTGAGCCCAAGGTGCAGCACAACTTCTT
GCCGGAGGAGTCGTTGCAGATGTTTGTGAGCACCAACTCCACCACGCGCC
CCGGCCATCTTGCGCCGCAGCACGACGTCATTCTCATCGGCCCGGACACG
CAGACGTTTGCCACCTTCCGCCCCATCGTCGTGTACGGCACCGATCGCTA
CGACATCAGCTCGTCCACGTCTGCGCTGCGCACGGACCGCGTGGTGCCGC
GCTTTGGCTACTGGTTGCGCTACAAGATTTTCTACAACTACAACCGCTTT
GTCGTGGACGAATACTACCGCGAGTCCACGTACCCCGCGGGGCAGTGGCT
TGTGGACCTTACCGGCTACGCGTCGCTGTTCACGGGCGCCAGCGTGTTTT
CgctgctgttgctgccgctgttgcgcgctgtgcgccgccgcGAGAAGGCG
CGCCTGCTCAGGAGCCGCCCGGAGGTGTATGTGTGGCGGCGCGCGCGCCT
GCAGGACGGCGTGTCGGCCGATGGACTGTTGGTGTCGCCCGAcgactccg
acttggactccgactccgactacgaTGCGTTTGGCACGCGCATTGGCTCC
GTCTTGCTGCCGGGCTTCAACGTGTGA
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