Gchil2638.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2638.t1
Unique NameGchil2638.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:2090453..2090887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31870.EFQ32933
PFAMsChromo
Max annot lvl4751|Fungi
KEGG koko:K11595
Evalue0.00043
EggNOG OGs2EQGQ@1|root,2STGS@2759|Eukaryota,39WV1@33154|Opisthokonta,3P1PV@4751|Fungi,3QNVS@4890|Ascomycota,21P01@147550|Sordariomycetes,1EUZC@1028384|Glomerellales
DescriptionChromo (CHRromatin Organisation MOdifier) domain
COG categoryB
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2638Gchil2638Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 2090453..2090887 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2638.t1.start1Gchil2638.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 2090453..2090455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2638.t1.CDS1Gchil2638.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 2090453..2090887 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2638.t1.exon1Gchil2638.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 2090453..2090887 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2638.t1.stop1Gchil2638.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 2090885..2090887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2638.t1Gchil2638.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 2090453..2090887 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2638.t1 ID=Gchil2638.t1|Name=Gchil2638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=145bp
MVNANYYDPSLPTDSDGFAPLDHTLLPEDEQQPEYVIERITSAGMGEDGT
MRYRVRWFGYTPEEDTWQEPQTLPANFLACYWRRISQSGRGLQEGATIGA
NNPTIGPNKPKPPLKPLPDTTVRRSTTVRRSSRIREQSQSFGDT*
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spliced messenger RNA

>Gchil2638.t1 ID=Gchil2638.t1|Name=Gchil2638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004400_pilon:2090453..2090887+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggtcaatgccaactactatgacccatcactcccaactgactccgatgg
attcgcccctctggatcacactctccttccggaggatgaacaacaaccgg
aatatgtgattgagcgcatcacctccgctggtatgggagaagatggaact
atgcgctatcgcgtccgttggttcggctacacacctgaggaagatacttg
gcaagagcctcaaacccttccggccaattttctcgcctgctattggcgca
gaatcagccaatcggggcgcggccttcaggagggggcaaccattggtgcg
aataatccaaccattggcccgaataaacccaaaccgcctctaaaaccgct
tcccgacacgacagttcgccggagcacgacggttcgtcgtagctcccgca
tcagggaacaaagtcagtccttcggagacacctga
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protein sequence of Gchil2638.t1

>Gchil2638.t1 ID=Gchil2638.t1|Name=Gchil2638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=145bp
MVNANYYDPSLPTDSDGFAPLDHTLLPEDEQQPEYVIERITSAGMGEDGT
MRYRVRWFGYTPEEDTWQEPQTLPANFLACYWRRISQSGRGLQEGATIGA
NNPTIGPNKPKPPLKPLPDTTVRRSTTVRRSSRIREQSQSFGDT*
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mRNA from alignment at tig00004400_pilon:2090453..2090887+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2638.t1 ID=Gchil2638.t1|Name=Gchil2638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004400_pilon:2090453..2090887+ (Gracilaria chilensis NLEC103_M9 male)
atggtcaatgccaactactatgacccatcactcccaactgactccgatgg
attcgcccctctggatcacactctccttccggaggatgaacaacaaccgg
aatatgtgattgagcgcatcacctccgctggtatgggagaagatggaact
atgcgctatcgcgtccgttggttcggctacacacctgaggaagatacttg
gcaagagcctcaaacccttccggccaattttctcgcctgctattggcgca
gaatcagccaatcggggcgcggccttcaggagggggcaaccattggtgcg
aataatccaaccattggcccgaataaacccaaaccgcctctaaaaccgct
tcccgacacgacagttcgccggagcacgacggttcgtcgtagctcccgca
tcagggaacaaagtcagtccttcggagacacctga
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Coding sequence (CDS) from alignment at tig00004400_pilon:2090453..2090887+

>Gchil2638.t1 ID=Gchil2638.t1|Name=Gchil2638.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00004400_pilon:2090453..2090887+ (Gracilaria chilensis NLEC103_M9 male)
atggtcaatgccaactactatgacccatcactcccaactgactccgatgg
attcgcccctctggatcacactctccttccggaggatgaacaacaaccgg
aatatgtgattgagcgcatcacctccgctggtatgggagaagatggaact
atgcgctatcgcgtccgttggttcggctacacacctgaggaagatacttg
gcaagagcctcaaacccttccggccaattttctcgcctgctattggcgca
gaatcagccaatcggggcgcggccttcaggagggggcaaccattggtgcg
aataatccaaccattggcccgaataaacccaaaccgcctctaaaaccgct
tcccgacacgacagttcgccggagcacgacggttcgtcgtagctcccgca
tcagggaacaaagtcagtccttcggagacacctga
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