Gchil2606.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2606.t1
Unique Name	Gchil2606.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:1793843..1794973 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX53024
PFAMs	EamA
Max annot lvl	2759\|Eukaryota
Evalue	1.47e-68
EggNOG OGs	COG0697@1\|root,2QPTR@2759\|Eukaryota
Description	EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2606	Gchil2606	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 1793843..1794973 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2606.t1.start1	Gchil2606.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 1793843..1793845 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2606.t1.CDS1	Gchil2606.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 1793843..1794973 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2606.t1.exon1	Gchil2606.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 1793843..1794973 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2606.t1.stop1	Gchil2606.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 1794971..1794973 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2606.t1	Gchil2606.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 1793843..1794973 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:1793843..1794973+
coding sequence from alignment at tig00004400_pilon:1793843..1794973+

mRNA sequence

>Gchil2606.t1 ID=Gchil2606.t1|Name=Gchil2606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=377bp
MPIVAALFEQTSVRQAFLRPLRVSLLRSTPSPRCGPSFAAGQYGRLHSRV
VCAVRPPEQSQHASRAEISAKSPHTHIPTADTSLHLSPTSTLFVLNFITV
LWGTQHAVMKSTLEALSPQALNLLRFSLASLLALPSLPLPTPANRSIYKT
GLELSFYLFLGYALQAQSLLTTSASRSGFLLYLNVKFVPILGRFLYGRSI
SALTWASAAMALTGTVLLTWDGTPPNTGDLGSVAAALASAMFILRLESAA
KLPADSVNSVALLGVSVLCGAWCLASPPSQLLPGNGTELSAILYLGIVTT
ALSNYLQTVAQRYISPERAAVVFALDPVYGALFASVWLGEHIGTQGIIGA
AVIVFAAMISNWEVIARKKRSGGDTT*

spliced messenger RNA

>Gchil2606.t1 ID=Gchil2606.t1|Name=Gchil2606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004400_pilon:1793843..1794973+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATTGTTGCAGCTCTGTTTGAACAAACGAGCGTCCGTCAGGCGTT
CCTGCGACCTCTCCGCGTCTCGCTTTTACGCTCTACTCCTTCGCCACGAT
GTGGTCCTTCTTTTGCGGCAGGTCAATATGGGAGGCTTCATTCACGTGTG
GTTTGTGCCGTGCGCCCCCCTGAGCAATCGCAGCATGCATCGCGTGCTGA
GATATCGGCAAAGAGTCCCCACACACATATTCCCACTGCTGATACTTCCC
TTCATCTGTCCCCTACTTCCACATTGTTCGTCCTTAACTTTATCACAGTT
TTATGGGGAACTCAACACGCCGTTATGAAGAGCACTCTGGAAGCACTTTC
CCCTCAAGCGTTGAATCTGTTACGTTTTTCTCTCGCGTCCCTTCTGGCAC
TGCCCTCGTTACCGCTCCCGACGCCTGCCAACAGAAGTATCTACAAGACC
GGTTTGGAGCTTTCCTTTTACTTGTTTCTTGGGTACGCGTTACAGGCACA
GAGTCTTCTTACAACTTCTGCCTCGCGTTCAGGCTTTCTTTTATATCTTA
ACGTTAAGTTTGTTCCGATTCTTGGTCGATTTCTGTACGGTAGGAGCATA
TCTGCTCTTACATGGGCGAGTGCTGCTATGGCGTTGACCGGAACAGTCCT
ACTAACTTGGGATGGTACGCCACCTAACACAGGTGATTTAGGAAGCGTGG
CTGCCGCGCTAGCGAGTGCCATGTTCATTCTTCGTCTGGAAAGTGCTGCA
AAATTGCCAGCTGATTCTGTCAACTCAGTTGCCTTGCTGGGCGTGTCGGT
ATTGTGTGGTGCATGGTGTTTGGCGTCACCCCCTTCACAATTATTACCTG
GCAATGGTACCGAACTGAGTGCCATTCTCTATCTTGGAATCGTCACCACG
GCCCTTAGCAACTATCTCCAAACGGTTGCTCAAAGATATATCAGTCCTGA
GCGTGCCGCCGTTGTGTTCGCTCTAGATCCCGTTTATGGGGCCCTGTTTG
CGAGTGTCTGGCTTGGTGAGCACATTGGTACACAAGGTATCATAGGAGCT
GCTGTCATTGTTTTCGCCGCCATGATATCGAACTGGGAAGTCATAGCAAG
AAAGAAACGGAGTGGGGGTGATACAACGTAG

protein sequence of Gchil2606.t1

>Gchil2606.t1 ID=Gchil2606.t1|Name=Gchil2606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=377bp
MPIVAALFEQTSVRQAFLRPLRVSLLRSTPSPRCGPSFAAGQYGRLHSRV
VCAVRPPEQSQHASRAEISAKSPHTHIPTADTSLHLSPTSTLFVLNFITV
LWGTQHAVMKSTLEALSPQALNLLRFSLASLLALPSLPLPTPANRSIYKT
GLELSFYLFLGYALQAQSLLTTSASRSGFLLYLNVKFVPILGRFLYGRSI
SALTWASAAMALTGTVLLTWDGTPPNTGDLGSVAAALASAMFILRLESAA
KLPADSVNSVALLGVSVLCGAWCLASPPSQLLPGNGTELSAILYLGIVTT
ALSNYLQTVAQRYISPERAAVVFALDPVYGALFASVWLGEHIGTQGIIGA
AVIVFAAMISNWEVIARKKRSGGDTT*

mRNA from alignment at tig00004400_pilon:1793843..1794973+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2606.t1 ID=Gchil2606.t1|Name=Gchil2606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004400_pilon:1793843..1794973+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCATTGTTGCAGCTCTGTTTGAACAAACGAGCGTCCGTCAGGCGTT
CCTGCGACCTCTCCGCGTCTCGCTTTTACGCTCTACTCCTTCGCCACGAT
GTGGTCCTTCTTTTGCGGCAGGTCAATATGGGAGGCTTCATTCACGTGTG
GTTTGTGCCGTGCGCCCCCCTGAGCAATCGCAGCATGCATCGCGTGCTGA
GATATCGGCAAAGAGTCCCCACACACATATTCCCACTGCTGATACTTCCC
TTCATCTGTCCCCTACTTCCACATTGTTCGTCCTTAACTTTATCACAGTT
TTATGGGGAACTCAACACGCCGTTATGAAGAGCACTCTGGAAGCACTTTC
CCCTCAAGCGTTGAATCTGTTACGTTTTTCTCTCGCGTCCCTTCTGGCAC
TGCCCTCGTTACCGCTCCCGACGCCTGCCAACAGAAGTATCTACAAGACC
GGTTTGGAGCTTTCCTTTTACTTGTTTCTTGGGTACGCGTTACAGGCACA
GAGTCTTCTTACAACTTCTGCCTCGCGTTCAGGCTTTCTTTTATATCTTA
ACGTTAAGTTTGTTCCGATTCTTGGTCGATTTCTGTACGGTAGGAGCATA
TCTGCTCTTACATGGGCGAGTGCTGCTATGGCGTTGACCGGAACAGTCCT
ACTAACTTGGGATGGTACGCCACCTAACACAGGTGATTTAGGAAGCGTGG
CTGCCGCGCTAGCGAGTGCCATGTTCATTCTTCGTCTGGAAAGTGCTGCA
AAATTGCCAGCTGATTCTGTCAACTCAGTTGCCTTGCTGGGCGTGTCGGT
ATTGTGTGGTGCATGGTGTTTGGCGTCACCCCCTTCACAATTATTACCTG
GCAATGGTACCGAACTGAGTGCCATTCTCTATCTTGGAATCGTCACCACG
GCCCTTAGCAACTATCTCCAAACGGTTGCTCAAAGATATATCAGTCCTGA
GCGTGCCGCCGTTGTGTTCGCTCTAGATCCCGTTTATGGGGCCCTGTTTG
CGAGTGTCTGGCTTGGTGAGCACATTGGTACACAAGGTATCATAGGAGCT
GCTGTCATTGTTTTCGCCGCCATGATATCGAACTGGGAAGTCATAGCAAG
AAAGAAACGGAGTGGGGGTGATACAACGTAG

Coding sequence (CDS) from alignment at tig00004400_pilon:1793843..1794973+

>Gchil2606.t1 ID=Gchil2606.t1|Name=Gchil2606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00004400_pilon:1793843..1794973+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCATTGTTGCAGCTCTGTTTGAACAAACGAGCGTCCGTCAGGCGTT
CCTGCGACCTCTCCGCGTCTCGCTTTTACGCTCTACTCCTTCGCCACGAT
GTGGTCCTTCTTTTGCGGCAGGTCAATATGGGAGGCTTCATTCACGTGTG
GTTTGTGCCGTGCGCCCCCCTGAGCAATCGCAGCATGCATCGCGTGCTGA
GATATCGGCAAAGAGTCCCCACACACATATTCCCACTGCTGATACTTCCC
TTCATCTGTCCCCTACTTCCACATTGTTCGTCCTTAACTTTATCACAGTT
TTATGGGGAACTCAACACGCCGTTATGAAGAGCACTCTGGAAGCACTTTC
CCCTCAAGCGTTGAATCTGTTACGTTTTTCTCTCGCGTCCCTTCTGGCAC
TGCCCTCGTTACCGCTCCCGACGCCTGCCAACAGAAGTATCTACAAGACC
GGTTTGGAGCTTTCCTTTTACTTGTTTCTTGGGTACGCGTTACAGGCACA
GAGTCTTCTTACAACTTCTGCCTCGCGTTCAGGCTTTCTTTTATATCTTA
ACGTTAAGTTTGTTCCGATTCTTGGTCGATTTCTGTACGGTAGGAGCATA
TCTGCTCTTACATGGGCGAGTGCTGCTATGGCGTTGACCGGAACAGTCCT
ACTAACTTGGGATGGTACGCCACCTAACACAGGTGATTTAGGAAGCGTGG
CTGCCGCGCTAGCGAGTGCCATGTTCATTCTTCGTCTGGAAAGTGCTGCA
AAATTGCCAGCTGATTCTGTCAACTCAGTTGCCTTGCTGGGCGTGTCGGT
ATTGTGTGGTGCATGGTGTTTGGCGTCACCCCCTTCACAATTATTACCTG
GCAATGGTACCGAACTGAGTGCCATTCTCTATCTTGGAATCGTCACCACG
GCCCTTAGCAACTATCTCCAAACGGTTGCTCAAAGATATATCAGTCCTGA
GCGTGCCGCCGTTGTGTTCGCTCTAGATCCCGTTTATGGGGCCCTGTTTG
CGAGTGTCTGGCTTGGTGAGCACATTGGTACACAAGGTATCATAGGAGCT
GCTGTCATTGTTTTCGCCGCCATGATATCGAACTGGGAAGTCATAGCAAG
AAAGAAACGGAGTGGGGGTGATACAACGTAG