Gchil2579.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2579.t1
Unique NameGchil2579.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length641
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1652828..1654750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2579Gchil2579Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1652828..1654750 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2579.t1.stop1Gchil2579.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1652828..1652830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2579.t1.CDS1Gchil2579.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1652828..1654750 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2579.t1.exon1Gchil2579.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1652828..1654750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2579.t1.start1Gchil2579.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1654748..1654750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2579.t1Gchil2579.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1652828..1654750 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2579.t1 ID=Gchil2579.t1|Name=Gchil2579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=641bp
MASIRQPTSKRRRSSEKTGRRFSVKDSRKQPILPTSHIASRKPSYSSNVV
RVLAIAAMALLFFSASSMFRRARRSRQLAATPLDTNQVVRDVDMQNHDPE
SKPEPDNNESDDAKDTESKVEEHTVENAETEKPPAEDAHVQSDAEHEQKP
TQLSPDAVRHDAPEESVPMEEPLESIEWYTRSDYMEGNRPMCRISKPYLL
SNGTLLVPAWMSNYEKLLDRCGLGKYGFYPITGPEGLEKVDMIDADFALT
IHPERFQEPTHAPAVFLTEHILKPSYLFDVFGGKAAIVPGITEHHCHTTA
SESKCEQLRPSKAGMKPAIFVPHRIESAPSGSWSRKYVDMFGVAHGHGNG
VLHLNTSSLLRKEHEGQSENIFATRFRTIMVTPGMFRHLPDSSLKRGNLF
SLKNGIEKTPKPKGSGACSVTIGIANGKDPASHGIEGASDLKDKIEELGK
YAMPEASMEVKTVDIGPEVDLDTHIKEMQTLDLYVAGSGDDMSSIGFLRS
QSTAVELMPFALQPVVHKNLARILGIHYESFKSKPHDDDFKRCIDGEIFS
LRKRGQLDLTGKPEWFEPLMNAWDAAVRQYALSGSSDFDIIGADKPVNNY
HSRTCALKQRIEIAIDDIARRVINTVKESCSLPQAQGSGI*
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spliced messenger RNA

>Gchil2579.t1 ID=Gchil2579.t1|Name=Gchil2579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at tig00004400_pilon:1652828..1654750- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAATTCGGCAGCCCACCAGCAAGCGCCGAAGATCCTCGGAAAA
GACTGGTCGTCGTTTTTCTGTCAAGGATTCTCGAAAGCAACCAATTCTTC
CCACATCACACATCGCCTCTCGCAAGCCCAGCTACTCTTCCAATGTCGTT
CGCGTACTAGCCATTGCTGCCATGGCTCTACTTTTTTTTTCCGCATCCTC
CATGTTTCGACGGGCGCGTCGTTCTCGACAACTCGCTGCCACGCCCCTTG
ACACGAATCAAGTCGTCCGAGACGTAGATATGCAAAACCACGACCCTGAG
AGTAAACCCGAACCCGATAACAACGAGTCTGATGACGCCAAGGACACTGA
AAGTAAGGTTGAAGAACACACCGTTGAAAATGCTGAAACAGAAAAGCCCC
CTGCGGAAGATGCTCATGTTCAAAGCGATGCAGAACATGAACAAAAACCT
ACACAGCTATCACCTGACGCTGTTCGACATGACGCGCCCGAAGAGTCGGT
GCCCATGGAGGAGCCCTTGGAAAGTATAGAGTGGTACACTCGAAGTGACT
ACATGGAAGGCAACCGCCCAATGTGCCGCATAAGCAAACCATACTTACTG
AGCAATGGCACTCTGTTGGTGCCGGCATGGATGTCCAACTACGAAAAGCT
CCTAGATCGATGCGGGCTCGGAAAGTATGGTTTCTACCCAATCACTGGAC
CAGAAGGTTTAGAAAAGGTGGATATGATTGACGCCGATTTTGCTCTCACT
ATCCACCCAGAGCGCTTCCAGGAACCTACTCATGCCCCTGCAGTATTCCT
CACAGAGCACATTCTCAAGCCTAGTTATCTCTTTGACGTTTTCGGAGGAA
AAGCGGCCATCGTTCCAGGGATCACTGAACACCATTGCCACACGACTGCA
TCTGAATCGAAGTGCGAGCAGCTTCGACCGTCCAAAGCTGGCATGAAACC
AGCCATATTTGTTCCTCATCGCATAGAAAGTGCCCCTTCCGGTTCATGGT
CTCGAAAGTACGTTGATATGTTCGGCGTCGCCCATGGCCATGGTAACGGA
GTTCTTCATTTGAATACCTCTTCGCTTCTCAGAAAGGAACACGAAGGGCA
AAGCGAGAACATCTTTGCAACTCGATTCAGAACAATTATGGTTACTCCAG
GCATGTTCCGGCACTTGCCGGACAGCAGTCTGAAGCGGGGTAATCTCTTC
TCCCTGAAGAACGGTATCGAGAAAACTCCCAAGCCGAAGGGTTCAGGAGC
TTGCTCGGTGACCATCGGAATTGCAAATGGAAAAGACCCCGCTTCTCATG
GAATAGAAGGAGCATCTGATCTCAAGGACAAGATTGAGGAGCTTGGCAAG
TACGCCATGCCCGAAGCCTCCATGGAGGTGAAGACTGTTGATATCGGACC
GGAGGTTGATTTGGACACTCATATCAAGGAGATGCAAACATTAGACCTGT
ATGTGGCTGGGAGCGGGGACGACATGAGCAGTATCGGATTCTTGCGATCC
CAATCCACAGCTGTAGAGCTGATGCCGTTCGCTCTCCAACCAGTTGTGCA
CAAGAACCTCGCGAGAATTCTTGGAATTCATTATGAGAGCTTTAAAAGTA
AGCCACATGATGATGACTTTAAGAGATGTATCGATGGAGAAATCTTTAGC
CTTCGTAAGAGGGGACAACTTGATCTTACTGGGAAACCAGAATGGTTCGA
GCCGTTAATGAACGCTTGGGACGCAGCTGTAAGACAGTACGCTCTCTCGG
GCTCCTCGGACTTTGACATTATCGGTGCAGATAAACCGGTGAACAACTAT
CACTCACGCACATGTGCGCTTAAGCAGCGAATTGAGATCGCAATAGACGA
CATAGCAAGACGGGTGATTAACACTGTCAAGGAATCGTGCTCGCTACCTC
AAGCTCAGGGAAGTGGCATATGA
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protein sequence of Gchil2579.t1

>Gchil2579.t1 ID=Gchil2579.t1|Name=Gchil2579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=641bp
MASIRQPTSKRRRSSEKTGRRFSVKDSRKQPILPTSHIASRKPSYSSNVV
RVLAIAAMALLFFSASSMFRRARRSRQLAATPLDTNQVVRDVDMQNHDPE
SKPEPDNNESDDAKDTESKVEEHTVENAETEKPPAEDAHVQSDAEHEQKP
TQLSPDAVRHDAPEESVPMEEPLESIEWYTRSDYMEGNRPMCRISKPYLL
SNGTLLVPAWMSNYEKLLDRCGLGKYGFYPITGPEGLEKVDMIDADFALT
IHPERFQEPTHAPAVFLTEHILKPSYLFDVFGGKAAIVPGITEHHCHTTA
SESKCEQLRPSKAGMKPAIFVPHRIESAPSGSWSRKYVDMFGVAHGHGNG
VLHLNTSSLLRKEHEGQSENIFATRFRTIMVTPGMFRHLPDSSLKRGNLF
SLKNGIEKTPKPKGSGACSVTIGIANGKDPASHGIEGASDLKDKIEELGK
YAMPEASMEVKTVDIGPEVDLDTHIKEMQTLDLYVAGSGDDMSSIGFLRS
QSTAVELMPFALQPVVHKNLARILGIHYESFKSKPHDDDFKRCIDGEIFS
LRKRGQLDLTGKPEWFEPLMNAWDAAVRQYALSGSSDFDIIGADKPVNNY
HSRTCALKQRIEIAIDDIARRVINTVKESCSLPQAQGSGI*
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mRNA from alignment at tig00004400_pilon:1652828..1654750-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2579.t1 ID=Gchil2579.t1|Name=Gchil2579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at tig00004400_pilon:1652828..1654750- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCAATTCGGCAGCCCACCAGCAAGCGCCGAAGATCCTCGGAAAA
GACTGGTCGTCGTTTTTCTGTCAAGGATTCTCGAAAGCAACCAATTCTTC
CCACATCACACATCGCCTCTCGCAAGCCCAGCTACTCTTCCAATGTCGTT
CGCGTACTAGCCATTGCTGCCATGGCTCTACTTTTTTTTTCCGCATCCTC
CATGTTTCGACGGGCGCGTCGTTCTCGACAACTCGCTGCCACGCCCCTTG
ACACGAATCAAGTCGTCCGAGACGTAGATATGCAAAACCACGACCCTGAG
AGTAAACCCGAACCCGATAACAACGAGTCTGATGACGCCAAGGACACTGA
AAGTAAGGTTGAAGAACACACCGTTGAAAATGCTGAAACAGAAAAGCCCC
CTGCGGAAGATGCTCATGTTCAAAGCGATGCAGAACATGAACAAAAACCT
ACACAGCTATCACCTGACGCTGTTCGACATGACGCGCCCGAAGAGTCGGT
GCCCATGGAGGAGCCCTTGGAAAGTATAGAGTGGTACACTCGAAGTGACT
ACATGGAAGGCAACCGCCCAATGTGCCGCATAAGCAAACCATACTTACTG
AGCAATGGCACTCTGTTGGTGCCGGCATGGATGTCCAACTACGAAAAGCT
CCTAGATCGATGCGGGCTCGGAAAGTATGGTTTCTACCCAATCACTGGAC
CAGAAGGTTTAGAAAAGGTGGATATGATTGACGCCGATTTTGCTCTCACT
ATCCACCCAGAGCGCTTCCAGGAACCTACTCATGCCCCTGCAGTATTCCT
CACAGAGCACATTCTCAAGCCTAGTTATCTCTTTGACGTTTTCGGAGGAA
AAGCGGCCATCGTTCCAGGGATCACTGAACACCATTGCCACACGACTGCA
TCTGAATCGAAGTGCGAGCAGCTTCGACCGTCCAAAGCTGGCATGAAACC
AGCCATATTTGTTCCTCATCGCATAGAAAGTGCCCCTTCCGGTTCATGGT
CTCGAAAGTACGTTGATATGTTCGGCGTCGCCCATGGCCATGGTAACGGA
GTTCTTCATTTGAATACCTCTTCGCTTCTCAGAAAGGAACACGAAGGGCA
AAGCGAGAACATCTTTGCAACTCGATTCAGAACAATTATGGTTACTCCAG
GCATGTTCCGGCACTTGCCGGACAGCAGTCTGAAGCGGGGTAATCTCTTC
TCCCTGAAGAACGGTATCGAGAAAACTCCCAAGCCGAAGGGTTCAGGAGC
TTGCTCGGTGACCATCGGAATTGCAAATGGAAAAGACCCCGCTTCTCATG
GAATAGAAGGAGCATCTGATCTCAAGGACAAGATTGAGGAGCTTGGCAAG
TACGCCATGCCCGAAGCCTCCATGGAGGTGAAGACTGTTGATATCGGACC
GGAGGTTGATTTGGACACTCATATCAAGGAGATGCAAACATTAGACCTGT
ATGTGGCTGGGAGCGGGGACGACATGAGCAGTATCGGATTCTTGCGATCC
CAATCCACAGCTGTAGAGCTGATGCCGTTCGCTCTCCAACCAGTTGTGCA
CAAGAACCTCGCGAGAATTCTTGGAATTCATTATGAGAGCTTTAAAAGTA
AGCCACATGATGATGACTTTAAGAGATGTATCGATGGAGAAATCTTTAGC
CTTCGTAAGAGGGGACAACTTGATCTTACTGGGAAACCAGAATGGTTCGA
GCCGTTAATGAACGCTTGGGACGCAGCTGTAAGACAGTACGCTCTCTCGG
GCTCCTCGGACTTTGACATTATCGGTGCAGATAAACCGGTGAACAACTAT
CACTCACGCACATGTGCGCTTAAGCAGCGAATTGAGATCGCAATAGACGA
CATAGCAAGACGGGTGATTAACACTGTCAAGGAATCGTGCTCGCTACCTC
AAGCTCAGGGAAGTGGCATATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1652828..1654750-

>Gchil2579.t1 ID=Gchil2579.t1|Name=Gchil2579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1923bp|location=Sequence derived from alignment at tig00004400_pilon:1652828..1654750- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCAATTCGGCAGCCCACCAGCAAGCGCCGAAGATCCTCGGAAAA
GACTGGTCGTCGTTTTTCTGTCAAGGATTCTCGAAAGCAACCAATTCTTC
CCACATCACACATCGCCTCTCGCAAGCCCAGCTACTCTTCCAATGTCGTT
CGCGTACTAGCCATTGCTGCCATGGCTCTACTTTTTTTTTCCGCATCCTC
CATGTTTCGACGGGCGCGTCGTTCTCGACAACTCGCTGCCACGCCCCTTG
ACACGAATCAAGTCGTCCGAGACGTAGATATGCAAAACCACGACCCTGAG
AGTAAACCCGAACCCGATAACAACGAGTCTGATGACGCCAAGGACACTGA
AAGTAAGGTTGAAGAACACACCGTTGAAAATGCTGAAACAGAAAAGCCCC
CTGCGGAAGATGCTCATGTTCAAAGCGATGCAGAACATGAACAAAAACCT
ACACAGCTATCACCTGACGCTGTTCGACATGACGCGCCCGAAGAGTCGGT
GCCCATGGAGGAGCCCTTGGAAAGTATAGAGTGGTACACTCGAAGTGACT
ACATGGAAGGCAACCGCCCAATGTGCCGCATAAGCAAACCATACTTACTG
AGCAATGGCACTCTGTTGGTGCCGGCATGGATGTCCAACTACGAAAAGCT
CCTAGATCGATGCGGGCTCGGAAAGTATGGTTTCTACCCAATCACTGGAC
CAGAAGGTTTAGAAAAGGTGGATATGATTGACGCCGATTTTGCTCTCACT
ATCCACCCAGAGCGCTTCCAGGAACCTACTCATGCCCCTGCAGTATTCCT
CACAGAGCACATTCTCAAGCCTAGTTATCTCTTTGACGTTTTCGGAGGAA
AAGCGGCCATCGTTCCAGGGATCACTGAACACCATTGCCACACGACTGCA
TCTGAATCGAAGTGCGAGCAGCTTCGACCGTCCAAAGCTGGCATGAAACC
AGCCATATTTGTTCCTCATCGCATAGAAAGTGCCCCTTCCGGTTCATGGT
CTCGAAAGTACGTTGATATGTTCGGCGTCGCCCATGGCCATGGTAACGGA
GTTCTTCATTTGAATACCTCTTCGCTTCTCAGAAAGGAACACGAAGGGCA
AAGCGAGAACATCTTTGCAACTCGATTCAGAACAATTATGGTTACTCCAG
GCATGTTCCGGCACTTGCCGGACAGCAGTCTGAAGCGGGGTAATCTCTTC
TCCCTGAAGAACGGTATCGAGAAAACTCCCAAGCCGAAGGGTTCAGGAGC
TTGCTCGGTGACCATCGGAATTGCAAATGGAAAAGACCCCGCTTCTCATG
GAATAGAAGGAGCATCTGATCTCAAGGACAAGATTGAGGAGCTTGGCAAG
TACGCCATGCCCGAAGCCTCCATGGAGGTGAAGACTGTTGATATCGGACC
GGAGGTTGATTTGGACACTCATATCAAGGAGATGCAAACATTAGACCTGT
ATGTGGCTGGGAGCGGGGACGACATGAGCAGTATCGGATTCTTGCGATCC
CAATCCACAGCTGTAGAGCTGATGCCGTTCGCTCTCCAACCAGTTGTGCA
CAAGAACCTCGCGAGAATTCTTGGAATTCATTATGAGAGCTTTAAAAGTA
AGCCACATGATGATGACTTTAAGAGATGTATCGATGGAGAAATCTTTAGC
CTTCGTAAGAGGGGACAACTTGATCTTACTGGGAAACCAGAATGGTTCGA
GCCGTTAATGAACGCTTGGGACGCAGCTGTAAGACAGTACGCTCTCTCGG
GCTCCTCGGACTTTGACATTATCGGTGCAGATAAACCGGTGAACAACTAT
CACTCACGCACATGTGCGCTTAAGCAGCGAATTGAGATCGCAATAGACGA
CATAGCAAGACGGGTGATTAACACTGTCAAGGAATCGTGCTCGCTACCTC
AAGCTCAGGGAAGTGGCATATGA
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