Gchil2575.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2575.t1
Unique NameGchil2575.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1640697..1641599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707494.1
Preferred nameEIF5A2
PFAMsEFP_N,eIF-5a
Max annot lvl2759|Eukaryota
KEGG koko:K03263
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010628,GO:0019222,GO:0019538,GO:0022603,GO:0022604,GO:0031344,GO:0032465,GO:0032467,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045787,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051302,GO:0051726,GO:0051781,GO:0060255,GO:0060491,GO:0065007,GO:0065008,GO:0071704,GO:0090068,GO:0090342,GO:0090343,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue6.71e-63
EggNOG OGsCOG0231@1|root,KOG3271@2759|Eukaryota
Descriptioneukaryotic translation initiation factor
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2575Gchil2575Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1640697..1641599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2575.t1Gchil2575.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1640697..1641599 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2575.t1.stop1Gchil2575.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1640697..1640699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2575.t1.CDS1Gchil2575.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1640697..1641100 -
Gchil2575.t1.CDS2Gchil2575.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1641542..1641599 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2575.t1.exon1Gchil2575.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1640697..1641100 -
Gchil2575.t1.exon2Gchil2575.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1641542..1641599 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2575.t1.intron1Gchil2575.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1641101..1641541 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2575.t1.start1Gchil2575.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1641597..1641599 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2575.t1 ID=Gchil2575.t1|Name=Gchil2575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=154bp
MSEHDSGSSGASNTIPVQAGALKKGAHVVIKGFACKIVEYSTSKTGKHGH
AKANIVGVDIFSGRKYEDISPSSHNMMSPIVTRKDYQLLDIDEEGFVTLM
DDKNETRSDLRLDSTVDEIHKKVQEDFDAGKDLFLTVLSALGKEKIIAVK
EVQ*
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spliced messenger RNA

>Gchil2575.t1 ID=Gchil2575.t1|Name=Gchil2575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00004400_pilon:1640697..1641599- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAGCACGATTCCGGGTCATCCGGTGCGTCCAATACCATTCCCGT
TCAAGCCGGTGCCTTGAAGAAGGGAGCTCATGTCGTTATCAAGGGGTTCG
CGTGCAAGATCGTTGAATACTCGACCTCTAAGACTGGCAAGCACGGTCAC
GCCAAGGCAAATATTGTAGGTGTGGACATTTTTTCCGGGAGGAAGTATGA
GGATATCTCGCCATCTTCCCACAACATGATGTCTCCTATTGTGACCCGAA
AAGACTATCAGCTTCTTGATATTGACGAGGAAGGATTTGTGACTCTCATG
GACGATAAGAATGAAACACGCTCTGATCTCCGCTTGGATTCTACAGTAGA
TGAAATCCATAAGAAAGTCCAAGAAGATTTCGATGCAGGAAAGGACCTCT
TCCTCACTGTCCTTTCCGCTTTGGGTAAGGAGAAGATTATCGCGGTGAAG
GAGGTGCAGTAA
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protein sequence of Gchil2575.t1

>Gchil2575.t1 ID=Gchil2575.t1|Name=Gchil2575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MSEHDSGSSGASNTIPVQAGALKKGAHVVIKGFACKIVEYSTSKTGKHGH
AKANIVGVDIFSGRKYEDISPSSHNMMSPIVTRKDYQLLDIDEEGFVTLM
DDKNETRSDLRLDSTVDEIHKKVQEDFDAGKDLFLTVLSALGKEKIIAVK
EVQ*
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mRNA from alignment at tig00004400_pilon:1640697..1641599-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2575.t1 ID=Gchil2575.t1|Name=Gchil2575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00004400_pilon:1640697..1641599- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGAGCACGATTCCGGGTCATCCGGTGCGTCCAATACCATTCCCGT
TCAAGCCGGTAAGTTTGCACCTCATCCTAGACGGTGTCTTCCTCTCGAAC
ACGGTTTTGCAATCTGGCGTCGCCACGGCTACTTTGCAAACGAGGCGGGC
GAGGATTCGTGACGTGCCAAATCAACTTTGAGCGTAATATGCCTTTTTGC
CTTGTTGCGCCACCAAGCTACTTTCGGTGCTCAAGTAAGGGTGTCTTTTT
GCTGTGCATGCTCTGCGCGCGTTCAAAAATGGAGCACGCCATTCCTCTAC
ATGGGCTCAACCACTCCTGACCGGGACGGGAATTTCTTGATCGATACCGT
TTCACACACGCTCCTGCGAGTTCAAATCAACTTCCCTGCAACTTCGGCTA
ACTTTTAATGTGTTTTTGTCCTGTACTTTCTGTGATAACTTGCTTGTTGA
ACGCTTCGTTGTTTAAAAAACGTTCGTGTCATTCTATTCAATTTAACAGG
TGCCTTGAAGAAGGGAGCTCATGTCGTTATCAAGGGGTTCGCGTGCAAGA
TCGTTGAATACTCGACCTCTAAGACTGGCAAGCACGGTCACGCCAAGGCA
AATATTGTAGGTGTGGACATTTTTTCCGGGAGGAAGTATGAGGATATCTC
GCCATCTTCCCACAACATGATGTCTCCTATTGTGACCCGAAAAGACTATC
AGCTTCTTGATATTGACGAGGAAGGATTTGTGACTCTCATGGACGATAAG
AATGAAACACGCTCTGATCTCCGCTTGGATTCTACAGTAGATGAAATCCA
TAAGAAAGTCCAAGAAGATTTCGATGCAGGAAAGGACCTCTTCCTCACTG
TCCTTTCCGCTTTGGGTAAGGAGAAGATTATCGCGGTGAAGGAGGTGCAG
TAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1640697..1641599-

>Gchil2575.t1 ID=Gchil2575.t1|Name=Gchil2575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00004400_pilon:1640697..1641599- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGAGCACGATTCCGGGTCATCCGGTGCGTCCAATACCATTCCCGT
TCAAGCCGGTGCCTTGAAGAAGGGAGCTCATGTCGTTATCAAGGGGTTCG
CGTGCAAGATCGTTGAATACTCGACCTCTAAGACTGGCAAGCACGGTCAC
GCCAAGGCAAATATTGTAGGTGTGGACATTTTTTCCGGGAGGAAGTATGA
GGATATCTCGCCATCTTCCCACAACATGATGTCTCCTATTGTGACCCGAA
AAGACTATCAGCTTCTTGATATTGACGAGGAAGGATTTGTGACTCTCATG
GACGATAAGAATGAAACACGCTCTGATCTCCGCTTGGATTCTACAGTAGA
TGAAATCCATAAGAAAGTCCAAGAAGATTTCGATGCAGGAAAGGACCTCT
TCCTCACTGTCCTTTCCGCTTTGGGTAAGGAGAAGATTATCGCGGTGAAG
GAGGTGCAGTAA
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