Gchil2504.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2504.t1
Unique NameGchil2504.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1399936..1400838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705360.1
PFAMsPseudoU_synth_1
Max annot lvl2759|Eukaryota
KEGG koko:K06173
Evalue2.02e-66
EggNOG OGsCOG0101@1|root,KOG4393@2759|Eukaryota
EC5.4.99.12
Descriptionpseudouridine synthase activity
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2504Gchil2504Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1399936..1400838 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2504.t1.stop1Gchil2504.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1399936..1399938 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2504.t1.CDS1Gchil2504.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1399936..1400838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2504.t1.exon1Gchil2504.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1399936..1400838 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2504.t1.start1Gchil2504.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1400836..1400838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2504.t1Gchil2504.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1399936..1400838 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2504.t1 ID=Gchil2504.t1|Name=Gchil2504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=301bp
MDTTSDNSKRKRFRARVAYDGTHFRGWQFQKACRSVQGELEKAIQRRAGK
LIRVVGASRTDSGVHARGQAVHFDVPELLASKEMKDMKKFQFVLNQILPK
DIRLTNLELAPLVTQDAIPMFKQASLLTSQDIKLRPWHSIYCSTGKLYTY
RFSIAHYPDPMRRLYRYHEWRAAKFGFSEYALRAATKKFVGSHDFSAFTN
ASNPPEGIIAPVLANPVRTIWSADVVNEGDDMYRIDFRINGAMYKMIRNI
AGTILAVSCGQLELSAIDKFFESRDRRIVPKSAPAHGLCLEQVFYENWDI
*
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spliced messenger RNA

>Gchil2504.t1 ID=Gchil2504.t1|Name=Gchil2504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00004400_pilon:1399936..1400838- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACAACATCTGACAACAGTAAGAGGAAGCGCTTCCGTGCTCGCGT
AGCTTACGACGGCACGCATTTTAGGGGATGGCAGTTTCAGAAGGCATGTC
GCTCAGTTCAAGGTGAATTAGAGAAGGCCATACAGCGTAGAGCTGGTAAG
CTAATACGGGTGGTGGGGGCAAGTAGAACTGACAGTGGTGTCCATGCAAG
GGGACAAGCGGTGCATTTTGATGTACCAGAGCTATTGGCTTCTAAAGAAA
TGAAGGATATGAAGAAGTTCCAGTTCGTTTTGAATCAAATACTGCCGAAG
GACATTAGACTTACAAACTTGGAACTTGCTCCATTGGTTACGCAAGATGC
CATACCCATGTTTAAACAAGCTTCGTTACTCACTTCACAGGATATAAAAC
TCCGCCCATGGCATAGTATCTATTGTTCTACAGGAAAGCTTTATACATAC
CGTTTCTCCATCGCCCACTACCCGGACCCGATGCGTCGACTGTACAGATA
CCATGAGTGGCGAGCGGCAAAATTTGGATTTTCCGAGTATGCATTACGGG
CAGCAACTAAAAAGTTCGTGGGGTCTCATGATTTTTCGGCGTTTACGAAT
GCCAGTAACCCACCGGAAGGAATTATTGCTCCTGTATTGGCGAATCCTGT
TCGAACAATCTGGTCAGCCGATGTAGTCAATGAAGGGGATGACATGTATC
GGATTGATTTTAGAATAAACGGTGCCATGTACAAGATGATTCGAAATATA
GCGGGGACCATTCTCGCTGTTAGCTGCGGCCAACTAGAACTGTCTGCCAT
CGATAAGTTTTTCGAATCTCGGGATAGAAGAATTGTTCCGAAGAGTGCTC
CTGCACATGGACTATGTCTTGAACAGGTGTTCTATGAGAATTGGGATATA
TAG
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protein sequence of Gchil2504.t1

>Gchil2504.t1 ID=Gchil2504.t1|Name=Gchil2504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=301bp
MDTTSDNSKRKRFRARVAYDGTHFRGWQFQKACRSVQGELEKAIQRRAGK
LIRVVGASRTDSGVHARGQAVHFDVPELLASKEMKDMKKFQFVLNQILPK
DIRLTNLELAPLVTQDAIPMFKQASLLTSQDIKLRPWHSIYCSTGKLYTY
RFSIAHYPDPMRRLYRYHEWRAAKFGFSEYALRAATKKFVGSHDFSAFTN
ASNPPEGIIAPVLANPVRTIWSADVVNEGDDMYRIDFRINGAMYKMIRNI
AGTILAVSCGQLELSAIDKFFESRDRRIVPKSAPAHGLCLEQVFYENWDI
*
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mRNA from alignment at tig00004400_pilon:1399936..1400838-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2504.t1 ID=Gchil2504.t1|Name=Gchil2504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00004400_pilon:1399936..1400838- (Gracilaria chilensis NLEC103_M9 male)
ATGGATACAACATCTGACAACAGTAAGAGGAAGCGCTTCCGTGCTCGCGT
AGCTTACGACGGCACGCATTTTAGGGGATGGCAGTTTCAGAAGGCATGTC
GCTCAGTTCAAGGTGAATTAGAGAAGGCCATACAGCGTAGAGCTGGTAAG
CTAATACGGGTGGTGGGGGCAAGTAGAACTGACAGTGGTGTCCATGCAAG
GGGACAAGCGGTGCATTTTGATGTACCAGAGCTATTGGCTTCTAAAGAAA
TGAAGGATATGAAGAAGTTCCAGTTCGTTTTGAATCAAATACTGCCGAAG
GACATTAGACTTACAAACTTGGAACTTGCTCCATTGGTTACGCAAGATGC
CATACCCATGTTTAAACAAGCTTCGTTACTCACTTCACAGGATATAAAAC
TCCGCCCATGGCATAGTATCTATTGTTCTACAGGAAAGCTTTATACATAC
CGTTTCTCCATCGCCCACTACCCGGACCCGATGCGTCGACTGTACAGATA
CCATGAGTGGCGAGCGGCAAAATTTGGATTTTCCGAGTATGCATTACGGG
CAGCAACTAAAAAGTTCGTGGGGTCTCATGATTTTTCGGCGTTTACGAAT
GCCAGTAACCCACCGGAAGGAATTATTGCTCCTGTATTGGCGAATCCTGT
TCGAACAATCTGGTCAGCCGATGTAGTCAATGAAGGGGATGACATGTATC
GGATTGATTTTAGAATAAACGGTGCCATGTACAAGATGATTCGAAATATA
GCGGGGACCATTCTCGCTGTTAGCTGCGGCCAACTAGAACTGTCTGCCAT
CGATAAGTTTTTCGAATCTCGGGATAGAAGAATTGTTCCGAAGAGTGCTC
CTGCACATGGACTATGTCTTGAACAGGTGTTCTATGAGAATTGGGATATA
TAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:1399936..1400838-

>Gchil2504.t1 ID=Gchil2504.t1|Name=Gchil2504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00004400_pilon:1399936..1400838- (Gracilaria chilensis NLEC103_M9 male)
ATGGATACAACATCTGACAACAGTAAGAGGAAGCGCTTCCGTGCTCGCGT
AGCTTACGACGGCACGCATTTTAGGGGATGGCAGTTTCAGAAGGCATGTC
GCTCAGTTCAAGGTGAATTAGAGAAGGCCATACAGCGTAGAGCTGGTAAG
CTAATACGGGTGGTGGGGGCAAGTAGAACTGACAGTGGTGTCCATGCAAG
GGGACAAGCGGTGCATTTTGATGTACCAGAGCTATTGGCTTCTAAAGAAA
TGAAGGATATGAAGAAGTTCCAGTTCGTTTTGAATCAAATACTGCCGAAG
GACATTAGACTTACAAACTTGGAACTTGCTCCATTGGTTACGCAAGATGC
CATACCCATGTTTAAACAAGCTTCGTTACTCACTTCACAGGATATAAAAC
TCCGCCCATGGCATAGTATCTATTGTTCTACAGGAAAGCTTTATACATAC
CGTTTCTCCATCGCCCACTACCCGGACCCGATGCGTCGACTGTACAGATA
CCATGAGTGGCGAGCGGCAAAATTTGGATTTTCCGAGTATGCATTACGGG
CAGCAACTAAAAAGTTCGTGGGGTCTCATGATTTTTCGGCGTTTACGAAT
GCCAGTAACCCACCGGAAGGAATTATTGCTCCTGTATTGGCGAATCCTGT
TCGAACAATCTGGTCAGCCGATGTAGTCAATGAAGGGGATGACATGTATC
GGATTGATTTTAGAATAAACGGTGCCATGTACAAGATGATTCGAAATATA
GCGGGGACCATTCTCGCTGTTAGCTGCGGCCAACTAGAACTGTCTGCCAT
CGATAAGTTTTTCGAATCTCGGGATAGAAGAATTGTTCCGAAGAGTGCTC
CTGCACATGGACTATGTCTTGAACAGGTGTTCTATGAGAATTGGGATATA
TAG
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