Gchil2484.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2484.t1
Unique NameGchil2484.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1312338..1312685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5011.R4XAK6
PFAMsMAPEG
Max annot lvl4751|Fungi
Evalue0.000448
EggNOG OGs2E07R@1|root,2S7P4@2759|Eukaryota,3A961@33154|Opisthokonta,3P6QZ@4751|Fungi,3QWXE@4890|Ascomycota
DescriptionMAPEG family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2484Gchil2484Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1312338..1312685 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2484.t1.start1Gchil2484.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1312338..1312340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2484.t1.CDS1Gchil2484.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1312338..1312685 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2484.t1.exon1Gchil2484.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1312338..1312685 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2484.t1.stop1Gchil2484.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1312683..1312685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2484.t1Gchil2484.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1312338..1312685 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2484.t1 ID=Gchil2484.t1|Name=Gchil2484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MLLRKFGKFENTTPRNYNEQTNSVPDDEKALIERLSGCHLNQLEMQSVYA
ADMAANVALGGSDSVLMAFTSLYIIFRIAYIAAHSGPQIVGRCVRSGTFV
GCMIVVMLIWGKTVF*
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spliced messenger RNA

>Gchil2484.t1 ID=Gchil2484.t1|Name=Gchil2484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004400_pilon:1312338..1312685+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTCCGGAAGTTTGGAAAGTTTGAAAACACCACCCCGCGAAATTA
CAATGAGCAAACGAATTCTGTTCCGGACGACGAAAAAGCTTTGATAGAAC
GTCTGTCCGGCTGCCATCTCAATCAACTCGAAATGCAAAGCGTGTATGCG
GCGGATATGGCTGCAAATGTTGCTCTGGGTGGTAGTGATTCCGTGTTGAT
GGCCTTCACTTCTCTTTACATCATCTTTCGCATTGCTTACATCGCGGCAC
ATAGCGGTCCTCAAATTGTGGGGAGATGCGTAAGGTCGGGAACGTTTGTT
GGATGCATGATAGTCGTCATGTTGATATGGGGTAAAACTGTCTTTTGA
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protein sequence of Gchil2484.t1

>Gchil2484.t1 ID=Gchil2484.t1|Name=Gchil2484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MLLRKFGKFENTTPRNYNEQTNSVPDDEKALIERLSGCHLNQLEMQSVYA
ADMAANVALGGSDSVLMAFTSLYIIFRIAYIAAHSGPQIVGRCVRSGTFV
GCMIVVMLIWGKTVF*
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mRNA from alignment at tig00004400_pilon:1312338..1312685+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2484.t1 ID=Gchil2484.t1|Name=Gchil2484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004400_pilon:1312338..1312685+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCTCCGGAAGTTTGGAAAGTTTGAAAACACCACCCCGCGAAATTA
CAATGAGCAAACGAATTCTGTTCCGGACGACGAAAAAGCTTTGATAGAAC
GTCTGTCCGGCTGCCATCTCAATCAACTCGAAATGCAAAGCGTGTATGCG
GCGGATATGGCTGCAAATGTTGCTCTGGGTGGTAGTGATTCCGTGTTGAT
GGCCTTCACTTCTCTTTACATCATCTTTCGCATTGCTTACATCGCGGCAC
ATAGCGGTCCTCAAATTGTGGGGAGATGCGTAAGGTCGGGAACGTTTGTT
GGATGCATGATAGTCGTCATGTTGATATGGGGTAAAACTGTCTTTTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1312338..1312685+

>Gchil2484.t1 ID=Gchil2484.t1|Name=Gchil2484.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004400_pilon:1312338..1312685+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCTCCGGAAGTTTGGAAAGTTTGAAAACACCACCCCGCGAAATTA
CAATGAGCAAACGAATTCTGTTCCGGACGACGAAAAAGCTTTGATAGAAC
GTCTGTCCGGCTGCCATCTCAATCAACTCGAAATGCAAAGCGTGTATGCG
GCGGATATGGCTGCAAATGTTGCTCTGGGTGGTAGTGATTCCGTGTTGAT
GGCCTTCACTTCTCTTTACATCATCTTTCGCATTGCTTACATCGCGGCAC
ATAGCGGTCCTCAAATTGTGGGGAGATGCGTAAGGTCGGGAACGTTTGTT
GGATGCATGATAGTCGTCATGTTGATATGGGGTAAAACTGTCTTTTGA
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