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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 756067.MicvaDRAFT_0248 |
| Preferred name | nusG |
| PFAMs | KOW,NusG |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K02601 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:1903506,GO:2000112,GO:2001141 |
| Evalue | 3.04e-23 |
| EggNOG OGs | COG0250@1|root,COG0250@2|Bacteria,1G1V4@1117|Cyanobacteria,1H99Z@1150|Oscillatoriales |
| Description | Participates in transcription elongation, termination and antitermination |
| COG category | K |
| BRITE | ko00000,ko03009,ko03021 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil2480.t1 ID=Gchil2480.t1|Name=Gchil2480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=814bp MTPPEHQRAFISAHARVPLIVRPKAFCARCPYHRRASHRWRCSLQEDTPD EAQPLPSKLPIPDEAQPLPSKLPIPDEPHAQVEGVVSLDSVDANFEEVLS KKWDTLDMFDGGPHDTRTERQSPKGLFPEEDEQKDPGETGTSAEGSKEES QKKNKRGRKAKKMATEEPQEQTSESEKWSGDARWYFVQVKPGCEQSCAIS IRNMSESVEDAQIHEVLVPTTKIMRLTKGGKAVSKEERFFPGYIIVLVSM SRFGYTQILRVPNIQCFMNDPNRDKKKNDPFRPPLPVKDSEMKLVFQKMR EAESGKPEVKTAVRPGDPVEITSGAYRGNKGRVTEVKPDLNVVKTELVIY GRISAVELEFHQVRVIEEADLEEYLTQNDTVREKIDTEAVKLGKESKSSA EAGIASPEDDLMSLLNDIEDGSPKSDYTTQYNFGDEEGFAAAESKDDTKE TISDALFPGSEDPRKESKTRKEKKEKKTVNDEELFGDFLFDSGRNDDEGL LSSNDDLASFLNGEDDADLWQLDEGEKRPSSMFDDTDDGFELLSDEKQGA SSLIDEAEHPFNSPDDGFVEVDKTRHAKRRSRPSPAKVKDADVFSVEGLK GVTISDSADYESSFKDTEVDFELMDEENEDESELRDGDADFEEELEKVQR DFEIAKSHVQDGGAFPSFSRSKDEAVLDEPKKPKAGCSNLPRHMSPWPEE DELPLVPPEDVHRIGGEAMVQDLYAELRRVEKEDDRKYELPPRGYDESEP IIEVAVEAATVDISKPNTREWQECEEFDYEEVKEKSRAVHKARKEARRRR QGSTSSDSSKKTF* back to topspliced messenger RNA >Gchil2480.t1 ID=Gchil2480.t1|Name=Gchil2480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2442bp|location=Sequence derived from alignment at tig00004400_pilon:1293439..1295880+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACCCCACCAGAACACCAAAGAGCCTTCATTTCTGCTCATGCCCGGGT TCCGCTGATTGTACGCCCGAAAGCATTTTGCGCCCGTTGCCCTTATCACC GCAGAGCTTCCCATCGGTGGAGATGCTCTCTGCAAGAGGACACCCCCGAT GAAGCACAACCATTACCCTCCAAGCTCCCGATTCCCGATGAAGCACAACC ATTACCCTCCAAGCTCCCGATTCCCGACGAACCGCACGCCCAAGTCGAAG GCGTTGTTTCATTGGACTCCGTAGATGCTAATTTTGAAGAGGTGTTGTCG AAGAAATGGGATACTCTTGACATGTTCGACGGGGGACCGCATGACACACG AACAGAGCGCCAGAGCCCCAAAGGCTTGTTTCCAGAAGAAGATGAGCAAA AAGACCCTGGAGAGACGGGAACATCTGCGGAAGGCTCGAAGGAAGAATCC CAGAAGAAAAATAAGAGAGGCAGAAAGGCGAAGAAGATGGCGACCGAAGA ACCGCAAGAGCAGACCTCAGAATCTGAAAAATGGAGCGGAGATGCGAGAT GGTATTTCGTCCAAGTGAAGCCGGGCTGCGAGCAAAGCTGTGCAATTTCG ATACGAAATATGAGCGAATCGGTGGAAGATGCCCAAATACACGAAGTGCT CGTCCCAACCACGAAGATTATGCGTTTAACTAAAGGTGGGAAAGCCGTCA GCAAAGAGGAGCGCTTTTTCCCTGGATATATTATTGTCCTGGTGTCCATG AGCCGCTTTGGCTACACCCAAATCCTTAGGGTTCCTAATATCCAATGCTT TATGAATGACCCAAACCGGGATAAGAAGAAGAATGATCCATTCCGACCGC CCCTTCCCGTCAAGGATTCTGAAATGAAGCTTGTTTTCCAGAAGATGAGA GAAGCTGAGAGCGGAAAGCCCGAAGTGAAAACAGCCGTGAGACCAGGTGA TCCTGTCGAAATCACGTCAGGTGCGTATCGAGGCAACAAAGGTAGGGTGA CTGAAGTGAAACCGGATCTTAACGTAGTCAAGACAGAACTCGTGATCTAT GGTCGAATAAGCGCTGTAGAACTCGAGTTCCATCAAGTCCGAGTCATCGA AGAAGCCGACTTGGAAGAATACTTGACGCAGAATGATACCGTGCGGGAGA AGATAGATACCGAAGCGGTGAAACTTGGAAAGGAGTCGAAATCTTCTGCT GAAGCTGGCATAGCATCCCCCGAAGATGACCTCATGTCGTTGCTGAACGA TATCGAAGATGGCAGCCCAAAATCAGACTACACTACGCAGTACAATTTCG GGGATGAAGAGGGTTTTGCCGCGGCTGAGAGTAAGGATGATACGAAAGAA ACTATTTCTGATGCCCTATTTCCAGGGAGTGAAGATCCTCGGAAAGAATC TAaaacgagaaaagagaagaaggaaaagaaaacagtgaaTGATGAAGAGC TATTCGGTGACTTCCTGTTTGATTCCGGCAGAAATGATGATGAAGGTCTT TTGTCTTCCAATGATGATTTGGCCTCTTTTCTCAACGGTGAGGACGATGC AGACCTCTGGCAGCTTGACGAAGGTGAAAAAAGGCCATCCTCGATGTTTG ACGACACCGACGATGGATTTGAACTCCTCAGTGATGAAAAGCAGGGTGCT TCATCGCTCATTGACGAAGCAGAACATCCATTCAACTCTCCTGATGATGG TTTTGTTGAAGTCgacaagacaagacatgccaagagaagaAGCCGTCCCT CGCCTGCAAAAGTGAAAGATGCCGACGTTTTTAGTGTAGAAGGTTTGAAA GGAGTGACCATCTCTGACAGCGCCGACTATGAAAGTAGTTTTAAAGATAC TGAAGTTGATTTTGAACTCATGGACGAGGAAAATGAAGACGAGAGTGAGT TGCGGGACGGGGACGCCGATTTCGAAGAAGAGCTTGAAAAAGTACAGCGT GACTTCGAAATTGCGAAGTCCCATGTACAAGACGGCGGCGCATTCCCCTC ATTTTCAAGATCCAAAGACGAGGCTGTCTTAGACGAGCCCAAAAAGCCCA AAGCTGGTTGTTCCAATTTACCGAGGCACATGAGTCCCTGGCCTGAAGAG GACGAACTTCCTCTAGTTCCTCCAGAAGATGTGCACCGAATAGGTGGAGA AGCAATGGTTCAGGATCTTTACGCCGAGTTACGTCGCGTTGAGAAAGAGG ATGACCGGAAGTATGAGCTCCCGCCCCGTGGCTACGACGAGTCCGAACCC ATCATTGAAGTCGCTGTAGAAGCTGCGACAGTCGATATTTCGAAACCCAA CACAAGGGAATGGCAGGAATGTGAAGAATTTGACTACGAAGAAGTAAAGG AAAAATCGAGAGCCGTGCACAAAGCTAGGAAAGAGGCAAGAAGGCGGCGG CAAGGAAGCACCAGCTCGGATTCCTCCAAAAAAACCTTCTAG back to topprotein sequence of Gchil2480.t1 >Gchil2480.t1 ID=Gchil2480.t1|Name=Gchil2480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=814bp
MTPPEHQRAFISAHARVPLIVRPKAFCARCPYHRRASHRWRCSLQEDTPD EAQPLPSKLPIPDEAQPLPSKLPIPDEPHAQVEGVVSLDSVDANFEEVLS KKWDTLDMFDGGPHDTRTERQSPKGLFPEEDEQKDPGETGTSAEGSKEES QKKNKRGRKAKKMATEEPQEQTSESEKWSGDARWYFVQVKPGCEQSCAIS IRNMSESVEDAQIHEVLVPTTKIMRLTKGGKAVSKEERFFPGYIIVLVSM SRFGYTQILRVPNIQCFMNDPNRDKKKNDPFRPPLPVKDSEMKLVFQKMR EAESGKPEVKTAVRPGDPVEITSGAYRGNKGRVTEVKPDLNVVKTELVIY GRISAVELEFHQVRVIEEADLEEYLTQNDTVREKIDTEAVKLGKESKSSA EAGIASPEDDLMSLLNDIEDGSPKSDYTTQYNFGDEEGFAAAESKDDTKE TISDALFPGSEDPRKESKTRKEKKEKKTVNDEELFGDFLFDSGRNDDEGL LSSNDDLASFLNGEDDADLWQLDEGEKRPSSMFDDTDDGFELLSDEKQGA SSLIDEAEHPFNSPDDGFVEVDKTRHAKRRSRPSPAKVKDADVFSVEGLK GVTISDSADYESSFKDTEVDFELMDEENEDESELRDGDADFEEELEKVQR DFEIAKSHVQDGGAFPSFSRSKDEAVLDEPKKPKAGCSNLPRHMSPWPEE DELPLVPPEDVHRIGGEAMVQDLYAELRRVEKEDDRKYELPPRGYDESEP IIEVAVEAATVDISKPNTREWQECEEFDYEEVKEKSRAVHKARKEARRRR QGSTSSDSSKKTF* back to topmRNA from alignment at tig00004400_pilon:1293439..1295880+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil2480.t1 ID=Gchil2480.t1|Name=Gchil2480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2442bp|location=Sequence derived from alignment at tig00004400_pilon:1293439..1295880+ (Gracilaria chilensis NLEC103_M9 male) ATGACCCCACCAGAACACCAAAGAGCCTTCATTTCTGCTCATGCCCGGGT
TCCGCTGATTGTACGCCCGAAAGCATTTTGCGCCCGTTGCCCTTATCACC
GCAGAGCTTCCCATCGGTGGAGATGCTCTCTGCAAGAGGACACCCCCGAT
GAAGCACAACCATTACCCTCCAAGCTCCCGATTCCCGATGAAGCACAACC
ATTACCCTCCAAGCTCCCGATTCCCGACGAACCGCACGCCCAAGTCGAAG
GCGTTGTTTCATTGGACTCCGTAGATGCTAATTTTGAAGAGGTGTTGTCG
AAGAAATGGGATACTCTTGACATGTTCGACGGGGGACCGCATGACACACG
AACAGAGCGCCAGAGCCCCAAAGGCTTGTTTCCAGAAGAAGATGAGCAAA
AAGACCCTGGAGAGACGGGAACATCTGCGGAAGGCTCGAAGGAAGAATCC
CAGAAGAAAAATAAGAGAGGCAGAAAGGCGAAGAAGATGGCGACCGAAGA
ACCGCAAGAGCAGACCTCAGAATCTGAAAAATGGAGCGGAGATGCGAGAT
GGTATTTCGTCCAAGTGAAGCCGGGCTGCGAGCAAAGCTGTGCAATTTCG
ATACGAAATATGAGCGAATCGGTGGAAGATGCCCAAATACACGAAGTGCT
CGTCCCAACCACGAAGATTATGCGTTTAACTAAAGGTGGGAAAGCCGTCA
GCAAAGAGGAGCGCTTTTTCCCTGGATATATTATTGTCCTGGTGTCCATG
AGCCGCTTTGGCTACACCCAAATCCTTAGGGTTCCTAATATCCAATGCTT
TATGAATGACCCAAACCGGGATAAGAAGAAGAATGATCCATTCCGACCGC
CCCTTCCCGTCAAGGATTCTGAAATGAAGCTTGTTTTCCAGAAGATGAGA
GAAGCTGAGAGCGGAAAGCCCGAAGTGAAAACAGCCGTGAGACCAGGTGA
TCCTGTCGAAATCACGTCAGGTGCGTATCGAGGCAACAAAGGTAGGGTGA
CTGAAGTGAAACCGGATCTTAACGTAGTCAAGACAGAACTCGTGATCTAT
GGTCGAATAAGCGCTGTAGAACTCGAGTTCCATCAAGTCCGAGTCATCGA
AGAAGCCGACTTGGAAGAATACTTGACGCAGAATGATACCGTGCGGGAGA
AGATAGATACCGAAGCGGTGAAACTTGGAAAGGAGTCGAAATCTTCTGCT
GAAGCTGGCATAGCATCCCCCGAAGATGACCTCATGTCGTTGCTGAACGA
TATCGAAGATGGCAGCCCAAAATCAGACTACACTACGCAGTACAATTTCG
GGGATGAAGAGGGTTTTGCCGCGGCTGAGAGTAAGGATGATACGAAAGAA
ACTATTTCTGATGCCCTATTTCCAGGGAGTGAAGATCCTCGGAAAGAATC
TAaaacgagaaaagagaagaaggaaaagaaaacagtgaaTGATGAAGAGC
TATTCGGTGACTTCCTGTTTGATTCCGGCAGAAATGATGATGAAGGTCTT
TTGTCTTCCAATGATGATTTGGCCTCTTTTCTCAACGGTGAGGACGATGC
AGACCTCTGGCAGCTTGACGAAGGTGAAAAAAGGCCATCCTCGATGTTTG
ACGACACCGACGATGGATTTGAACTCCTCAGTGATGAAAAGCAGGGTGCT
TCATCGCTCATTGACGAAGCAGAACATCCATTCAACTCTCCTGATGATGG
TTTTGTTGAAGTCgacaagacaagacatgccaagagaagaAGCCGTCCCT
CGCCTGCAAAAGTGAAAGATGCCGACGTTTTTAGTGTAGAAGGTTTGAAA
GGAGTGACCATCTCTGACAGCGCCGACTATGAAAGTAGTTTTAAAGATAC
TGAAGTTGATTTTGAACTCATGGACGAGGAAAATGAAGACGAGAGTGAGT
TGCGGGACGGGGACGCCGATTTCGAAGAAGAGCTTGAAAAAGTACAGCGT
GACTTCGAAATTGCGAAGTCCCATGTACAAGACGGCGGCGCATTCCCCTC
ATTTTCAAGATCCAAAGACGAGGCTGTCTTAGACGAGCCCAAAAAGCCCA
AAGCTGGTTGTTCCAATTTACCGAGGCACATGAGTCCCTGGCCTGAAGAG
GACGAACTTCCTCTAGTTCCTCCAGAAGATGTGCACCGAATAGGTGGAGA
AGCAATGGTTCAGGATCTTTACGCCGAGTTACGTCGCGTTGAGAAAGAGG
ATGACCGGAAGTATGAGCTCCCGCCCCGTGGCTACGACGAGTCCGAACCC
ATCATTGAAGTCGCTGTAGAAGCTGCGACAGTCGATATTTCGAAACCCAA
CACAAGGGAATGGCAGGAATGTGAAGAATTTGACTACGAAGAAGTAAAGG
AAAAATCGAGAGCCGTGCACAAAGCTAGGAAAGAGGCAAGAAGGCGGCGG
CAAGGAAGCACCAGCTCGGATTCCTCCAAAAAAACCTTCTAG back to topCoding sequence (CDS) from alignment at tig00004400_pilon:1293439..1295880+ >Gchil2480.t1 ID=Gchil2480.t1|Name=Gchil2480.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2442bp|location=Sequence derived from alignment at tig00004400_pilon:1293439..1295880+ (Gracilaria chilensis NLEC103_M9 male) ATGACCCCACCAGAACACCAAAGAGCCTTCATTTCTGCTCATGCCCGGGT TCCGCTGATTGTACGCCCGAAAGCATTTTGCGCCCGTTGCCCTTATCACC GCAGAGCTTCCCATCGGTGGAGATGCTCTCTGCAAGAGGACACCCCCGAT GAAGCACAACCATTACCCTCCAAGCTCCCGATTCCCGATGAAGCACAACC ATTACCCTCCAAGCTCCCGATTCCCGACGAACCGCACGCCCAAGTCGAAG GCGTTGTTTCATTGGACTCCGTAGATGCTAATTTTGAAGAGGTGTTGTCG AAGAAATGGGATACTCTTGACATGTTCGACGGGGGACCGCATGACACACG AACAGAGCGCCAGAGCCCCAAAGGCTTGTTTCCAGAAGAAGATGAGCAAA AAGACCCTGGAGAGACGGGAACATCTGCGGAAGGCTCGAAGGAAGAATCC CAGAAGAAAAATAAGAGAGGCAGAAAGGCGAAGAAGATGGCGACCGAAGA ACCGCAAGAGCAGACCTCAGAATCTGAAAAATGGAGCGGAGATGCGAGAT GGTATTTCGTCCAAGTGAAGCCGGGCTGCGAGCAAAGCTGTGCAATTTCG ATACGAAATATGAGCGAATCGGTGGAAGATGCCCAAATACACGAAGTGCT CGTCCCAACCACGAAGATTATGCGTTTAACTAAAGGTGGGAAAGCCGTCA GCAAAGAGGAGCGCTTTTTCCCTGGATATATTATTGTCCTGGTGTCCATG AGCCGCTTTGGCTACACCCAAATCCTTAGGGTTCCTAATATCCAATGCTT TATGAATGACCCAAACCGGGATAAGAAGAAGAATGATCCATTCCGACCGC CCCTTCCCGTCAAGGATTCTGAAATGAAGCTTGTTTTCCAGAAGATGAGA GAAGCTGAGAGCGGAAAGCCCGAAGTGAAAACAGCCGTGAGACCAGGTGA TCCTGTCGAAATCACGTCAGGTGCGTATCGAGGCAACAAAGGTAGGGTGA CTGAAGTGAAACCGGATCTTAACGTAGTCAAGACAGAACTCGTGATCTAT GGTCGAATAAGCGCTGTAGAACTCGAGTTCCATCAAGTCCGAGTCATCGA AGAAGCCGACTTGGAAGAATACTTGACGCAGAATGATACCGTGCGGGAGA AGATAGATACCGAAGCGGTGAAACTTGGAAAGGAGTCGAAATCTTCTGCT GAAGCTGGCATAGCATCCCCCGAAGATGACCTCATGTCGTTGCTGAACGA TATCGAAGATGGCAGCCCAAAATCAGACTACACTACGCAGTACAATTTCG GGGATGAAGAGGGTTTTGCCGCGGCTGAGAGTAAGGATGATACGAAAGAA ACTATTTCTGATGCCCTATTTCCAGGGAGTGAAGATCCTCGGAAAGAATC TAaaacgagaaaagagaagaaggaaaagaaaacagtgaaTGATGAAGAGC TATTCGGTGACTTCCTGTTTGATTCCGGCAGAAATGATGATGAAGGTCTT TTGTCTTCCAATGATGATTTGGCCTCTTTTCTCAACGGTGAGGACGATGC AGACCTCTGGCAGCTTGACGAAGGTGAAAAAAGGCCATCCTCGATGTTTG ACGACACCGACGATGGATTTGAACTCCTCAGTGATGAAAAGCAGGGTGCT TCATCGCTCATTGACGAAGCAGAACATCCATTCAACTCTCCTGATGATGG TTTTGTTGAAGTCgacaagacaagacatgccaagagaagaAGCCGTCCCT CGCCTGCAAAAGTGAAAGATGCCGACGTTTTTAGTGTAGAAGGTTTGAAA GGAGTGACCATCTCTGACAGCGCCGACTATGAAAGTAGTTTTAAAGATAC TGAAGTTGATTTTGAACTCATGGACGAGGAAAATGAAGACGAGAGTGAGT TGCGGGACGGGGACGCCGATTTCGAAGAAGAGCTTGAAAAAGTACAGCGT GACTTCGAAATTGCGAAGTCCCATGTACAAGACGGCGGCGCATTCCCCTC ATTTTCAAGATCCAAAGACGAGGCTGTCTTAGACGAGCCCAAAAAGCCCA AAGCTGGTTGTTCCAATTTACCGAGGCACATGAGTCCCTGGCCTGAAGAG GACGAACTTCCTCTAGTTCCTCCAGAAGATGTGCACCGAATAGGTGGAGA AGCAATGGTTCAGGATCTTTACGCCGAGTTACGTCGCGTTGAGAAAGAGG ATGACCGGAAGTATGAGCTCCCGCCCCGTGGCTACGACGAGTCCGAACCC ATCATTGAAGTCGCTGTAGAAGCTGCGACAGTCGATATTTCGAAACCCAA CACAAGGGAATGGCAGGAATGTGAAGAATTTGACTACGAAGAAGTAAAGG AAAAATCGAGAGCCGTGCACAAAGCTAGGAAAGAGGCAAGAAGGCGGCGG CAAGGAAGCACCAGCTCGGATTCCTCCAAAAAAACCTTCTAG back to top
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