Gchil2421.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2421.t1
Unique NameGchil2421.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:840591..841215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2421Gchil2421Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 840591..841215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2421.t1Gchil2421.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 840591..841215 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2421.t1.stop1Gchil2421.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 840591..840593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2421.t1.CDS1Gchil2421.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 840591..840946 -
Gchil2421.t1.CDS2Gchil2421.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 841041..841215 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2421.t1.exon1Gchil2421.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 840591..840946 -
Gchil2421.t1.exon2Gchil2421.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 841041..841215 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2421.t1.intron1Gchil2421.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 840947..841040 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2421.t1.start1Gchil2421.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 841213..841215 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2421.t1 ID=Gchil2421.t1|Name=Gchil2421.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=177bp
MESEDVAVDKPAIDDAELESLLDAVDCRTQQQQAFHDLLSDGFMSLARER
YRDPLSTERLGQLVYDLREDVKSSFQIDVQENEKSGVLSMSKTIPGPDSS
SITTGSTLRRRKTNEGEKASNTRTKRVKARPDVANSFMAIPSSEVREAIR
CFKLAMDQAVELVNTTNKLAATLDGQ*
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spliced messenger RNA

>Gchil2421.t1 ID=Gchil2421.t1|Name=Gchil2421.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00004400_pilon:840591..841215- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTGAAGATGTTGCTGTCGACAAGCCTGCGATCGATGACGCAGA
ATTAGAATCATTACTTGACGCTGTGGACTGTAGAACGCAGCAACAACAAG
CGTTTCACGATCTTCTCAGTGACGGATTTATGTCACTCGCACGGGAGCGA
TATCGTGACCCGTTGTCAACAGAGCGATTGGGACAGCTTGTGTATGACCT
TAGAGAAGATGTGAAAAGTTCTTTTCAAATTGATGTTCAAGAAAATGAAA
AAAGTGGGGTACTATCAATGAGCAAGACCATTCCAGGACCCGATAGTAGT
TCAATAACGACGGGAAGTACACTGCGTCGCCGAAAGACGAATGAAGGCGA
GAAAGCATCCAACACAAGAACGAAGAGAGTTAAAGCTCGCCCTGATGTAG
CAAATTCCTTCATGGCCATTCCTAGCAGCGAAGTTCGAGAGGCAATCAGA
TGCTTCAAGCTGGCCATGGACCAAGCTGTAGAACTTGTTAACACTACCAA
CAAGTTGGCCGCAACATTGGACGGTCAATAG
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protein sequence of Gchil2421.t1

>Gchil2421.t1 ID=Gchil2421.t1|Name=Gchil2421.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=177bp
MESEDVAVDKPAIDDAELESLLDAVDCRTQQQQAFHDLLSDGFMSLARER
YRDPLSTERLGQLVYDLREDVKSSFQIDVQENEKSGVLSMSKTIPGPDSS
SITTGSTLRRRKTNEGEKASNTRTKRVKARPDVANSFMAIPSSEVREAIR
CFKLAMDQAVELVNTTNKLAATLDGQ*
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mRNA from alignment at tig00004400_pilon:840591..841215-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2421.t1 ID=Gchil2421.t1|Name=Gchil2421.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=625bp|location=Sequence derived from alignment at tig00004400_pilon:840591..841215- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCTGAAGATGTTGCTGTCGACAAGCCTGCGATCGATGACGCAGA
ATTAGAATCATTACTTGACGCTGTGGACTGTAGAACGCAGCAACAACAAG
CGTTTCACGATCTTCTCAGTGACGGATTTATGTCACTCGCACGGGAGCGA
TATCGTGACCCGTTGTCAACAGAGCGTAAGTCTGTCTTCGCGTCGATAGA
AATTGTAACGGTATAAGATTCGACACCCACCATCTAACACTCGAGAAAAA
TGTTTTGTACTACACATAGGATTGGGACAGCTTGTGTATGACCTTAGAGA
AGATGTGAAAAGTTCTTTTCAAATTGATGTTCAAGAAAATGAAAAAAGTG
GGGTACTATCAATGAGCAAGACCATTCCAGGACCCGATAGTAGTTCAATA
ACGACGGGAAGTACACTGCGTCGCCGAAAGACGAATGAAGGCGAGAAAGC
ATCCAACACAAGAACGAAGAGAGTTAAAGCTCGCCCTGATGTAGCAAATT
CCTTCATGGCCATTCCTAGCAGCGAAGTTCGAGAGGCAATCAGATGCTTC
AAGCTGGCCATGGACCAAGCTGTAGAACTTGTTAACACTACCAACAAGTT
GGCCGCAACATTGGACGGTCAATAG
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Coding sequence (CDS) from alignment at tig00004400_pilon:840591..841215-

>Gchil2421.t1 ID=Gchil2421.t1|Name=Gchil2421.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00004400_pilon:840591..841215- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCTGAAGATGTTGCTGTCGACAAGCCTGCGATCGATGACGCAGA
ATTAGAATCATTACTTGACGCTGTGGACTGTAGAACGCAGCAACAACAAG
CGTTTCACGATCTTCTCAGTGACGGATTTATGTCACTCGCACGGGAGCGA
TATCGTGACCCGTTGTCAACAGAGCGATTGGGACAGCTTGTGTATGACCT
TAGAGAAGATGTGAAAAGTTCTTTTCAAATTGATGTTCAAGAAAATGAAA
AAAGTGGGGTACTATCAATGAGCAAGACCATTCCAGGACCCGATAGTAGT
TCAATAACGACGGGAAGTACACTGCGTCGCCGAAAGACGAATGAAGGCGA
GAAAGCATCCAACACAAGAACGAAGAGAGTTAAAGCTCGCCCTGATGTAG
CAAATTCCTTCATGGCCATTCCTAGCAGCGAAGTTCGAGAGGCAATCAGA
TGCTTCAAGCTGGCCATGGACCAAGCTGTAGAACTTGTTAACACTACCAA
CAAGTTGGCCGCAACATTGGACGGTCAATAG
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