Gchil2416.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2416.t1
Unique NameGchil2416.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:826769..827155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2416Gchil2416Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 826769..827155 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2416.t1.start1Gchil2416.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 826769..826771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2416.t1.CDS1Gchil2416.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 826769..827155 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2416.t1.exon1Gchil2416.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 826769..827155 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2416.t1.stop1Gchil2416.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 827153..827155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2416.t1Gchil2416.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 826769..827155 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2416.t1 ID=Gchil2416.t1|Name=Gchil2416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=129bp
MHCLTTPYKKKCQLLCHHRKSTCHECAVPLCISTKATSYFFLELEEDVSP
EFPFEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVD
VQDDELPEGFGVSAGALGADFKPAKFFE*
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spliced messenger RNA

>Gchil2416.t1 ID=Gchil2416.t1|Name=Gchil2416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00004400_pilon:826769..827155+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGTCTCACAACGCCGTACAAGAAGAAATGCCAACTACTTTGCCA
CCACAGGAAATCGACATGCCACGAGTGTGCAGTACCCCTATGTATTTCGA
CCAAAGCCACTAGTTACTTCTTTTTGGAACTGGAGGAGGACGTTTCACCA
GAGTTTCCATTCGAGGGCTTCGACGTTGAGGGCTTCGACGTTGAGGGCTT
CGACGTTGAGGGCTTCGACGTTGAGGGCTTCGACGTTGAGGGCTTCGACG
TTGAGGGCTTCGATGTTGAGGGCTTCGATGTTGAGGGCTTCGACGTTGAT
GTGCAGGATGACGAACTACCAGAAGGCTTTGGAGTTTCGGCCGGAGCTTT
GGGGGCAGATTTTAAGCCAGCAAAGTTCTTTGAATGA
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protein sequence of Gchil2416.t1

>Gchil2416.t1 ID=Gchil2416.t1|Name=Gchil2416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=129bp
MHCLTTPYKKKCQLLCHHRKSTCHECAVPLCISTKATSYFFLELEEDVSP
EFPFEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVEGFDVD
VQDDELPEGFGVSAGALGADFKPAKFFE*
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mRNA from alignment at tig00004400_pilon:826769..827155+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2416.t1 ID=Gchil2416.t1|Name=Gchil2416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00004400_pilon:826769..827155+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTGTCTCACAACGCCGTACAAGAAGAAATGCCAACTACTTTGCCA
CCACAGGAAATCGACATGCCACGAGTGTGCAGTACCCCTATGTATTTCGA
CCAAAGCCACTAGTTACTTCTTTTTGGAACTGGAGGAGGACGTTTCACCA
GAGTTTCCATTCGAGGGCTTCGACGTTGAGGGCTTCGACGTTGAGGGCTT
CGACGTTGAGGGCTTCGACGTTGAGGGCTTCGACGTTGAGGGCTTCGACG
TTGAGGGCTTCGATGTTGAGGGCTTCGATGTTGAGGGCTTCGACGTTGAT
GTGCAGGATGACGAACTACCAGAAGGCTTTGGAGTTTCGGCCGGAGCTTT
GGGGGCAGATTTTAAGCCAGCAAAGTTCTTTGAATGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:826769..827155+

>Gchil2416.t1 ID=Gchil2416.t1|Name=Gchil2416.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00004400_pilon:826769..827155+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTGTCTCACAACGCCGTACAAGAAGAAATGCCAACTACTTTGCCA
CCACAGGAAATCGACATGCCACGAGTGTGCAGTACCCCTATGTATTTCGA
CCAAAGCCACTAGTTACTTCTTTTTGGAACTGGAGGAGGACGTTTCACCA
GAGTTTCCATTCGAGGGCTTCGACGTTGAGGGCTTCGACGTTGAGGGCTT
CGACGTTGAGGGCTTCGACGTTGAGGGCTTCGACGTTGAGGGCTTCGACG
TTGAGGGCTTCGATGTTGAGGGCTTCGATGTTGAGGGCTTCGACGTTGAT
GTGCAGGATGACGAACTACCAGAAGGCTTTGGAGTTTCGGCCGGAGCTTT
GGGGGCAGATTTTAAGCCAGCAAAGTTCTTTGAATGA
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