Gchil2414.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2414.t1
Unique NameGchil2414.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:817519..818895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2414Gchil2414Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 817519..818895 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2414.t1.start1Gchil2414.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 817519..817521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2414.t1.CDS1Gchil2414.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 817519..818895 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2414.t1.exon1Gchil2414.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 817519..818895 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2414.t1.stop1Gchil2414.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 818893..818895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2414.t1Gchil2414.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 817519..818895 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2414.t1 ID=Gchil2414.t1|Name=Gchil2414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp
MSYSSGCNSVSILVHPNDLRGGNRNGVRKENRLARRKCFRMWRRVSVEAA
PALVRDRIFYAADEMHDAEFLPRTPTEFIKGSADSPNVVHSNDEFEISFI
GMNVTPQDTLACNENELLLYSLDNDYEIPLSTRTRRHQSERSIEMENGYL
RQARLNNDSRALKLQNFSSLSSNIASGPSVHVNDLPFIHYDPLRDGRKHG
TEPNSYVTIPASMALYKQYKRRDEAVDSRYQQNASVRFNLLDLDNINDEQ
LDATSSITQLGELVEMGAVAVPYAELIANAFQVVAAIGKRGLEKYSTPDL
VFSVDIQFRLAEATSTDYQVECDSQTSVSMAAANNIGNYLRYGYYFFLEK
SVDVQLYAQTRSSSQYVPLLMRRTDLRGKRRGRNDVEYFPLTNVSYVVMK
VSPGCTQNIEARKTELFAEHKNRLDTVLHARNISEMLTKRKKKRRSSTIS
SPKRALVY*
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spliced messenger RNA

>Gchil2414.t1 ID=Gchil2414.t1|Name=Gchil2414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00004400_pilon:817519..818895+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTATTCCTCCGGTTGCAATTCTGTATCTATTCTCGTTCACCCAAA
CGACCTCCGCGGCGGTAATCGCAACGGCGTGCGAAAAGAAAATCGCCTAG
CGCGACGAAAATGCTTTCGAATGTGGCGCCGTGTCTCAGTGGAAGCCGCA
CCAGCACTAGTGCGAGATAGGATCTTCTACGCCGCCGATGAAATGCATGA
TGCTGAGTTTCTCCCAAGAACGCCCACTGAGTTCATTAAAGGAAGTGCAG
ACTCGCCCAACGTCGTGCACTCGAACGATGAGTTCGAAATATCTTTCATT
GGTATGAATGTTACGCCGCAAGATACGCTGGCTTGTAACGAAAATGAATT
ACTTCTCTACAGTCTCGATAATGATTATGAAATCCCCCTTTCAACACGGA
CCCGAAGACATCAATCCGAGAGAAGCATAGAGATGGAGAACGGTTACCTG
CGACAAGCAAGATTGAACAACGATTCAAGAGCTCTTAAGCTTCAAAATTT
CAGCTCGCTTAGCTCCAACATTGCATCGGGTCCATCTGTTCATGTCAATG
ACCTGCCTTTCATTCATTACGACCCGTTGCGAGATGGTCGAAAACACGGC
ACCGAGCCCAATTCATACGTAACCATTCCGGCGTCTATGGCATTGTACAA
GCAATATAAACGACGAGACGAAGCAGTTGATTCAAGATATCAGCAGAATG
CATCTGTTCGATTCAACTTGTTGGACCTGGACAATATCAACGACGAACAG
CTCGACGCTACTTCGAGTATTACACAGCTGGGTGAATTAGTTGAAATGGG
TGCTGTGGCTGTTCCATATGCTGAGTTGATTGCGAACGCATTTCAAGTTG
TTGCGGCGATCGGAAAGCGAGGTCTTGAGAAATATTCGACTCCAGACCTT
GTGTTTTCCGTGGACATCCAGTTCCGCCTGGCTGAAGCAACAAGCACAGA
TTATCAGGTTGAATGTGATTCGCAAACAAGTGTATCAATGGCAGCAGCCA
ATAACATTGGCAACTACTTAAGATACGGGTACTACTTTTTTCTCGAGAAA
AGCGTGGATGTCCAACTGTACGCTCAAACCCGTTCTTCGTCGCAATATGT
GCCACTGTTGATGCGAAGAACAGATCTGAGAGGGAAACGGCGTGGCAGAA
ATGATGTAGAGTACTTTCCGCTGACGAATGTGAGCTACGTTGTGATGAAA
GTTTCTCCGGGTTGCACGCAAAACATCGAGGCACGAAAGACTGAGCTGTT
CGCGGAACACAAAAACCGGCTGGATACCGTTCTGCATGCGAGGAACATTT
CTGAGATGCTGACCAAAAGGAAGAAGAAACGGCGAAGTTCCACCATAAGT
TCGCCCAAGCGCGCTTTGGTTTATTGA
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protein sequence of Gchil2414.t1

>Gchil2414.t1 ID=Gchil2414.t1|Name=Gchil2414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=459bp
MSYSSGCNSVSILVHPNDLRGGNRNGVRKENRLARRKCFRMWRRVSVEAA
PALVRDRIFYAADEMHDAEFLPRTPTEFIKGSADSPNVVHSNDEFEISFI
GMNVTPQDTLACNENELLLYSLDNDYEIPLSTRTRRHQSERSIEMENGYL
RQARLNNDSRALKLQNFSSLSSNIASGPSVHVNDLPFIHYDPLRDGRKHG
TEPNSYVTIPASMALYKQYKRRDEAVDSRYQQNASVRFNLLDLDNINDEQ
LDATSSITQLGELVEMGAVAVPYAELIANAFQVVAAIGKRGLEKYSTPDL
VFSVDIQFRLAEATSTDYQVECDSQTSVSMAAANNIGNYLRYGYYFFLEK
SVDVQLYAQTRSSSQYVPLLMRRTDLRGKRRGRNDVEYFPLTNVSYVVMK
VSPGCTQNIEARKTELFAEHKNRLDTVLHARNISEMLTKRKKKRRSSTIS
SPKRALVY*
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mRNA from alignment at tig00004400_pilon:817519..818895+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2414.t1 ID=Gchil2414.t1|Name=Gchil2414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00004400_pilon:817519..818895+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTATTCCTCCGGTTGCAATTCTGTATCTATTCTCGTTCACCCAAA
CGACCTCCGCGGCGGTAATCGCAACGGCGTGCGAAAAGAAAATCGCCTAG
CGCGACGAAAATGCTTTCGAATGTGGCGCCGTGTCTCAGTGGAAGCCGCA
CCAGCACTAGTGCGAGATAGGATCTTCTACGCCGCCGATGAAATGCATGA
TGCTGAGTTTCTCCCAAGAACGCCCACTGAGTTCATTAAAGGAAGTGCAG
ACTCGCCCAACGTCGTGCACTCGAACGATGAGTTCGAAATATCTTTCATT
GGTATGAATGTTACGCCGCAAGATACGCTGGCTTGTAACGAAAATGAATT
ACTTCTCTACAGTCTCGATAATGATTATGAAATCCCCCTTTCAACACGGA
CCCGAAGACATCAATCCGAGAGAAGCATAGAGATGGAGAACGGTTACCTG
CGACAAGCAAGATTGAACAACGATTCAAGAGCTCTTAAGCTTCAAAATTT
CAGCTCGCTTAGCTCCAACATTGCATCGGGTCCATCTGTTCATGTCAATG
ACCTGCCTTTCATTCATTACGACCCGTTGCGAGATGGTCGAAAACACGGC
ACCGAGCCCAATTCATACGTAACCATTCCGGCGTCTATGGCATTGTACAA
GCAATATAAACGACGAGACGAAGCAGTTGATTCAAGATATCAGCAGAATG
CATCTGTTCGATTCAACTTGTTGGACCTGGACAATATCAACGACGAACAG
CTCGACGCTACTTCGAGTATTACACAGCTGGGTGAATTAGTTGAAATGGG
TGCTGTGGCTGTTCCATATGCTGAGTTGATTGCGAACGCATTTCAAGTTG
TTGCGGCGATCGGAAAGCGAGGTCTTGAGAAATATTCGACTCCAGACCTT
GTGTTTTCCGTGGACATCCAGTTCCGCCTGGCTGAAGCAACAAGCACAGA
TTATCAGGTTGAATGTGATTCGCAAACAAGTGTATCAATGGCAGCAGCCA
ATAACATTGGCAACTACTTAAGATACGGGTACTACTTTTTTCTCGAGAAA
AGCGTGGATGTCCAACTGTACGCTCAAACCCGTTCTTCGTCGCAATATGT
GCCACTGTTGATGCGAAGAACAGATCTGAGAGGGAAACGGCGTGGCAGAA
ATGATGTAGAGTACTTTCCGCTGACGAATGTGAGCTACGTTGTGATGAAA
GTTTCTCCGGGTTGCACGCAAAACATCGAGGCACGAAAGACTGAGCTGTT
CGCGGAACACAAAAACCGGCTGGATACCGTTCTGCATGCGAGGAACATTT
CTGAGATGCTGACCAAAAGGAAGAAGAAACGGCGAAGTTCCACCATAAGT
TCGCCCAAGCGCGCTTTGGTTTATTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:817519..818895+

>Gchil2414.t1 ID=Gchil2414.t1|Name=Gchil2414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00004400_pilon:817519..818895+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTATTCCTCCGGTTGCAATTCTGTATCTATTCTCGTTCACCCAAA
CGACCTCCGCGGCGGTAATCGCAACGGCGTGCGAAAAGAAAATCGCCTAG
CGCGACGAAAATGCTTTCGAATGTGGCGCCGTGTCTCAGTGGAAGCCGCA
CCAGCACTAGTGCGAGATAGGATCTTCTACGCCGCCGATGAAATGCATGA
TGCTGAGTTTCTCCCAAGAACGCCCACTGAGTTCATTAAAGGAAGTGCAG
ACTCGCCCAACGTCGTGCACTCGAACGATGAGTTCGAAATATCTTTCATT
GGTATGAATGTTACGCCGCAAGATACGCTGGCTTGTAACGAAAATGAATT
ACTTCTCTACAGTCTCGATAATGATTATGAAATCCCCCTTTCAACACGGA
CCCGAAGACATCAATCCGAGAGAAGCATAGAGATGGAGAACGGTTACCTG
CGACAAGCAAGATTGAACAACGATTCAAGAGCTCTTAAGCTTCAAAATTT
CAGCTCGCTTAGCTCCAACATTGCATCGGGTCCATCTGTTCATGTCAATG
ACCTGCCTTTCATTCATTACGACCCGTTGCGAGATGGTCGAAAACACGGC
ACCGAGCCCAATTCATACGTAACCATTCCGGCGTCTATGGCATTGTACAA
GCAATATAAACGACGAGACGAAGCAGTTGATTCAAGATATCAGCAGAATG
CATCTGTTCGATTCAACTTGTTGGACCTGGACAATATCAACGACGAACAG
CTCGACGCTACTTCGAGTATTACACAGCTGGGTGAATTAGTTGAAATGGG
TGCTGTGGCTGTTCCATATGCTGAGTTGATTGCGAACGCATTTCAAGTTG
TTGCGGCGATCGGAAAGCGAGGTCTTGAGAAATATTCGACTCCAGACCTT
GTGTTTTCCGTGGACATCCAGTTCCGCCTGGCTGAAGCAACAAGCACAGA
TTATCAGGTTGAATGTGATTCGCAAACAAGTGTATCAATGGCAGCAGCCA
ATAACATTGGCAACTACTTAAGATACGGGTACTACTTTTTTCTCGAGAAA
AGCGTGGATGTCCAACTGTACGCTCAAACCCGTTCTTCGTCGCAATATGT
GCCACTGTTGATGCGAAGAACAGATCTGAGAGGGAAACGGCGTGGCAGAA
ATGATGTAGAGTACTTTCCGCTGACGAATGTGAGCTACGTTGTGATGAAA
GTTTCTCCGGGTTGCACGCAAAACATCGAGGCACGAAAGACTGAGCTGTT
CGCGGAACACAAAAACCGGCTGGATACCGTTCTGCATGCGAGGAACATTT
CTGAGATGCTGACCAAAAGGAAGAAGAAACGGCGAAGTTCCACCATAAGT
TCGCCCAAGCGCGCTTTGGTTTATTGA
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