Gchil2400.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2400.t1
Unique Name	Gchil2400.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	793

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004400_pilon	contig	tig00004400_pilon:452173..454805 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_005982-tr
PFAMs	RVT_1,rve
Max annot lvl	33208\|Metazoa
Evalue	6.92e-56
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3AH2J@33154\|Opisthokonta,3BX3Q@33208\|Metazoa
Description	transposition, RNA-mediated
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2400	Gchil2400	Gracilaria chilensis NLEC103_M9 male	gene	tig00004400_pilon 452173..454805 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2400.t1	Gchil2400.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004400_pilon 452173..454805 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2400.t1.start1	Gchil2400.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004400_pilon 452173..452175 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2400.t1.CDS1	Gchil2400.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 452173..452557 +
Gchil2400.t1.CDS2	Gchil2400.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 452674..452808 +
Gchil2400.t1.CDS3	Gchil2400.t1.CDS3	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004400_pilon 452947..454805 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2400.t1.exon1	Gchil2400.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 452173..452557 +
Gchil2400.t1.exon2	Gchil2400.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 452674..452808 +
Gchil2400.t1.exon3	Gchil2400.t1.exon3	Gracilaria chilensis NLEC103_M9 male	exon	tig00004400_pilon 452947..454805 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2400.t1.intron1	Gchil2400.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004400_pilon 452558..452673 +
Gchil2400.t1.intron2	Gchil2400.t1.intron2	Gracilaria chilensis NLEC103_M9 male	intron	tig00004400_pilon 452809..452946 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2400.t1.stop1	Gchil2400.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004400_pilon 454803..454805 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004400_pilon:452173..454805+
coding sequence from alignment at tig00004400_pilon:452173..454805+

mRNA sequence

>Gchil2400.t1 ID=Gchil2400.t1|Name=Gchil2400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=793bp
MFVDGLDPAIRTLVARRREDRPKATYLELVQFARAEGEALCARTPGSRLR
SAKALMLQPGTRSASMIDEQASRRVFDNLQLAHSDVHSIPTTELPSTLDE
SQYVIEDDTLLYADNGRIREPRVPHESVGHTSPQCVLSLREWAQVVVNYE
ALSPEDKAAVPIASYICARTDVPPASGGAGPEKLNVGVSSQGGAPSDSRS
TAPEASKPRSPVKILSRKEVVNDGNSESFSVLRRQWKRVSHNRFPDRVLV
MAKRNYKVYADLGLSLQFMVRHHTVLDTGAGPSFVVEEVLPPDLQSRIRR
DHVPEVADANYKPLDTVGFIELAVRVGARVTKLDFVVCRKLAAPVILGCD
FCDRFVEAIFPRQRRVEMEDGSSTPIVRRPLRRATKKYVPLLAAKEPVPD
NRESNKLRVAASFCVPPESQMMVKVTSRQHGLRGLLPLSSLYDRHILAIA
NGIVHVEPNQPFHVLIAKLGTVPQYLVKNQVIGSVMPHPIAMVPTKLTAA
DVLGLVHSKERDSSEPVSSPVPEVKPVTSGTQPISTSGDRPDPAQELEDL
ALSHVPESYRHRSRELLRDFTTIWDSSLGDVATTEHRIDLLLDTRPISQH
PYRAGPAARAEEKAQVDKILRAGFIEPAQSPWASPVVLAPKQDGSRRFCV
DYRRLNAVTVKDVYPIQRMGEYIDSLGTATVFTTLNANWGYWQVPVRKQD
QDKTAFACHSGLYRFKRMPFGLTNAPATFERAIDILLAFFKWRTCLVYLD
DIIVFSDNLDEHLTHVRDIMTTLRDAGVTLKLKRNVTSSRTP*

spliced messenger RNA

>Gchil2400.t1 ID=Gchil2400.t1|Name=Gchil2400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2379bp|location=Sequence derived from alignment at tig00004400_pilon:452173..454805+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtttgtcgatggtttggacccggcgatccggactcttgttgctcgacg
tcgagaagatagacctaaagccacgtatttggaactagtgcagttcgctc
gcgcagaaggtgaagccctctgcgcacgcactcctggatcgaggcttagg
tccgcaaaagcgttgatgttacaaccgggtacccggtcagcttcgatgat
cgacgaacaagcctctcgaagggtttttgataacctgcagctagcccata
gcgacgttcattccatcccgacaacggagttaccctcaaccttggacgaa
tcacaatacgtgattgaggacgacacgctactctatgcggataatggtcg
catccgtgagccacgcgtcccacacgagagtgtgggccatacttctccac
aatgtgtgttgtctctccgagaatgggcacaagtagtagtcaattacgag
gccctatccccggaggacaaagcagctgttccaattgcatcgtatatctg
tgctcgaacggatgttccacccgcctccggcggagcaggcccagaaaaac
taaatgtgggagtctcctctcaaggaggggcgccctcagattcgaggtca
acggcgcccgaggcgtccaagcctcgctccccggtcaaaatcctttcaag
gaaagaggtcgtcaatgacgggaactcggaaagctttagtgttctgcgtc
gtcagtggaaacgtgtttcccataacaggttcccggatagagttctggtg
atggccaagagaaactacaaggtctatgctgaccttggcctttcactcca
gtttatggtgcgacaccataccgtcttagacaccggtgccggtccgagct
ttgtcgtggaggaagtgttaccgcctgatttgcagtctaggatccgccgc
gaccacgtcccggaggtcgctgacgcgaactacaaaccgttggatacggt
ggggttcatagaactggcagtccgcgttggcgctcgcgtgacgaaactcg
acttcgtcgtatgtcggaaattagccgccccagtcatcttgggttgcgac
ttttgcgaccgcttcgtcgaagcgatcttcccccgccaacggcgtgtcga
gatggaggatggatcgtccactccgatcgttcgtcgtccgcttaggcgtg
ccacgaagaagtatgtcccgctactggcagcaaaggaacctgtaccggat
aaccgtgaatctaataagctccgcgtcgcagcgtcgttttgcgtcccgcc
tgagtcccaaatgatggtgaaagtaacctcccgtcaacacggactccggg
gtttgctaccattgtcgtcactgtatgacaggcacatcctcgcaattgcg
aatggaatcgtccatgtggagccaaaccaaccgtttcacgtgctgatcgc
caaactagggactgtaccccagtatctggtgaagaaccaagtgatagggt
ccgtcatgccgcaccccatcgctatggtgccgacaaagctgaccgcagct
gacgttctcggactcgttcactctaaggagagggacagctcggaacctgt
ttcatcaccagtacccgaggttaaacctgtaacatcagggacgcagccca
tttcaacgagcggtgaccgccccgatccagcccaagaactcgaggacctg
gctctcagccacgtcccggagtcataccgccatcgatcgcgagaactttt
aagggacttcaccactatttgggacagctcccttggtgatgttgccacta
cggaacaccggattgatttgctactggacacccgacccatctctcagcac
ccataccgtgccggacccgccgcacgcgcggaggaaaaggcacaagtgga
taaaattcttcgagcaggattcattgaaccggctcagtcgccgtgggctt
ctccagtagtactggctccaaagcaggatggttcccggaggttttgcgtc
gactaccgtcggttgaatgccgtcaccgtcaaggacgtgtatccaatcca
aagaatgggcgaatacattgactcgctgggcaccgccaccgtctttacaa
ccctgaatgccaattggggatactggcaagttccggtaaggaagcaagac
caggataaaaccgctttcgcgtgtcactccggtctctaccgtttcaaacg
gatgccttttggtcttaccaacgcccccgctactttcgagcgagccatcg
acatcctattggccttcttcaaatggcgtacctgcctggtctacctggat
gacataatcgtcttctcagataatctggacgaacatctcactcatgtgag
ggatatcatgaccacgcttcgagatgcgggtgtcactcttaagttgaaga
gaaatgtaacttcttcacggacaccgtga

protein sequence of Gchil2400.t1

>Gchil2400.t1 ID=Gchil2400.t1|Name=Gchil2400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=793bp
MFVDGLDPAIRTLVARRREDRPKATYLELVQFARAEGEALCARTPGSRLR
SAKALMLQPGTRSASMIDEQASRRVFDNLQLAHSDVHSIPTTELPSTLDE
SQYVIEDDTLLYADNGRIREPRVPHESVGHTSPQCVLSLREWAQVVVNYE
ALSPEDKAAVPIASYICARTDVPPASGGAGPEKLNVGVSSQGGAPSDSRS
TAPEASKPRSPVKILSRKEVVNDGNSESFSVLRRQWKRVSHNRFPDRVLV
MAKRNYKVYADLGLSLQFMVRHHTVLDTGAGPSFVVEEVLPPDLQSRIRR
DHVPEVADANYKPLDTVGFIELAVRVGARVTKLDFVVCRKLAAPVILGCD
FCDRFVEAIFPRQRRVEMEDGSSTPIVRRPLRRATKKYVPLLAAKEPVPD
NRESNKLRVAASFCVPPESQMMVKVTSRQHGLRGLLPLSSLYDRHILAIA
NGIVHVEPNQPFHVLIAKLGTVPQYLVKNQVIGSVMPHPIAMVPTKLTAA
DVLGLVHSKERDSSEPVSSPVPEVKPVTSGTQPISTSGDRPDPAQELEDL
ALSHVPESYRHRSRELLRDFTTIWDSSLGDVATTEHRIDLLLDTRPISQH
PYRAGPAARAEEKAQVDKILRAGFIEPAQSPWASPVVLAPKQDGSRRFCV
DYRRLNAVTVKDVYPIQRMGEYIDSLGTATVFTTLNANWGYWQVPVRKQD
QDKTAFACHSGLYRFKRMPFGLTNAPATFERAIDILLAFFKWRTCLVYLD
DIIVFSDNLDEHLTHVRDIMTTLRDAGVTLKLKRNVTSSRTP*

mRNA from alignment at tig00004400_pilon:452173..454805+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2400.t1 ID=Gchil2400.t1|Name=Gchil2400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2633bp|location=Sequence derived from alignment at tig00004400_pilon:452173..454805+ (Gracilaria chilensis NLEC103_M9 male)
atgtttgtcgatggtttggacccggcgatccggactcttgttgctcgacg
tcgagaagatagacctaaagccacgtatttggaactagtgcagttcgctc
gcgcagaaggtgaagccctctgcgcacgcactcctggatcgaggcttagg
tccgcaaaagcgttgatgttacaaccgggtacccggtcagcttcgatgat
cgacgaacaagcctctcgaagggtttttgataacctgcagctagcccata
gcgacgttcattccatcccgacaacggagttaccctcaaccttggacgaa
tcacaatacgtgattgaggacgacacgctactctatgcggataatggtcg
catccgtgagccacgcgtcccacacgagagtgtgggtatgtccggttttc
gcgtcctggttggagagataccagccccgcggggaagttcgccgagcctc
gccatccaacgccggcttatggtctgatttgtcatctctgctacaaacca
ggccatacttctccacaatgtgtgttgtctctccgagaatgggcacaagt
agtagtcaattacgaggccctatccccggaggacaaagcagctgttccaa
ttgcatcgtatatctgtgctcgaacggatgttccacgtcacgtgttgttt
tcctagagctcgggtcgtacctgcacctgaatcccgtgtcaccgacgtgg
ttggtcaccccaccgcttctgcagtaccttctggacctgatgccccggcg
ttgcctgctcaacgtcctgagcagccgcctccggcggagcaggcccagaa
aaactaaatgtgggagtctcctctcaaggaggggcgccctcagattcgag
gtcaacggcgcccgaggcgtccaagcctcgctccccggtcaaaatccttt
caaggaaagaggtcgtcaatgacgggaactcggaaagctttagtgttctg
cgtcgtcagtggaaacgtgtttcccataacaggttcccggatagagttct
ggtgatggccaagagaaactacaaggtctatgctgaccttggcctttcac
tccagtttatggtgcgacaccataccgtcttagacaccggtgccggtccg
agctttgtcgtggaggaagtgttaccgcctgatttgcagtctaggatccg
ccgcgaccacgtcccggaggtcgctgacgcgaactacaaaccgttggata
cggtggggttcatagaactggcagtccgcgttggcgctcgcgtgacgaaa
ctcgacttcgtcgtatgtcggaaattagccgccccagtcatcttgggttg
cgacttttgcgaccgcttcgtcgaagcgatcttcccccgccaacggcgtg
tcgagatggaggatggatcgtccactccgatcgttcgtcgtccgcttagg
cgtgccacgaagaagtatgtcccgctactggcagcaaaggaacctgtacc
ggataaccgtgaatctaataagctccgcgtcgcagcgtcgttttgcgtcc
cgcctgagtcccaaatgatggtgaaagtaacctcccgtcaacacggactc
cggggtttgctaccattgtcgtcactgtatgacaggcacatcctcgcaat
tgcgaatggaatcgtccatgtggagccaaaccaaccgtttcacgtgctga
tcgccaaactagggactgtaccccagtatctggtgaagaaccaagtgata
gggtccgtcatgccgcaccccatcgctatggtgccgacaaagctgaccgc
agctgacgttctcggactcgttcactctaaggagagggacagctcggaac
ctgtttcatcaccagtacccgaggttaaacctgtaacatcagggacgcag
cccatttcaacgagcggtgaccgccccgatccagcccaagaactcgagga
cctggctctcagccacgtcccggagtcataccgccatcgatcgcgagaac
ttttaagggacttcaccactatttgggacagctcccttggtgatgttgcc
actacggaacaccggattgatttgctactggacacccgacccatctctca
gcacccataccgtgccggacccgccgcacgcgcggaggaaaaggcacaag
tggataaaattcttcgagcaggattcattgaaccggctcagtcgccgtgg
gcttctccagtagtactggctccaaagcaggatggttcccggaggttttg
cgtcgactaccgtcggttgaatgccgtcaccgtcaaggacgtgtatccaa
tccaaagaatgggcgaatacattgactcgctgggcaccgccaccgtcttt
acaaccctgaatgccaattggggatactggcaagttccggtaaggaagca
agaccaggataaaaccgctttcgcgtgtcactccggtctctaccgtttca
aacggatgccttttggtcttaccaacgcccccgctactttcgagcgagcc
atcgacatcctattggccttcttcaaatggcgtacctgcctggtctacct
ggatgacataatcgtcttctcagataatctggacgaacatctcactcatg
tgagggatatcatgaccacgcttcgagatgcgggtgtcactcttaagttg
aagagaaatgtaacttcttcacggacaccgtga

Coding sequence (CDS) from alignment at tig00004400_pilon:452173..454805+

>Gchil2400.t1 ID=Gchil2400.t1|Name=Gchil2400.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2379bp|location=Sequence derived from alignment at tig00004400_pilon:452173..454805+ (Gracilaria chilensis NLEC103_M9 male)
atgtttgtcgatggtttggacccggcgatccggactcttgttgctcgacg
tcgagaagatagacctaaagccacgtatttggaactagtgcagttcgctc
gcgcagaaggtgaagccctctgcgcacgcactcctggatcgaggcttagg
tccgcaaaagcgttgatgttacaaccgggtacccggtcagcttcgatgat
cgacgaacaagcctctcgaagggtttttgataacctgcagctagcccata
gcgacgttcattccatcccgacaacggagttaccctcaaccttggacgaa
tcacaatacgtgattgaggacgacacgctactctatgcggataatggtcg
catccgtgagccacgcgtcccacacgagagtgtgggccatacttctccac
aatgtgtgttgtctctccgagaatgggcacaagtagtagtcaattacgag
gccctatccccggaggacaaagcagctgttccaattgcatcgtatatctg
tgctcgaacggatgttccacccgcctccggcggagcaggcccagaaaaac
taaatgtgggagtctcctctcaaggaggggcgccctcagattcgaggtca
acggcgcccgaggcgtccaagcctcgctccccggtcaaaatcctttcaag
gaaagaggtcgtcaatgacgggaactcggaaagctttagtgttctgcgtc
gtcagtggaaacgtgtttcccataacaggttcccggatagagttctggtg
atggccaagagaaactacaaggtctatgctgaccttggcctttcactcca
gtttatggtgcgacaccataccgtcttagacaccggtgccggtccgagct
ttgtcgtggaggaagtgttaccgcctgatttgcagtctaggatccgccgc
gaccacgtcccggaggtcgctgacgcgaactacaaaccgttggatacggt
ggggttcatagaactggcagtccgcgttggcgctcgcgtgacgaaactcg
acttcgtcgtatgtcggaaattagccgccccagtcatcttgggttgcgac
ttttgcgaccgcttcgtcgaagcgatcttcccccgccaacggcgtgtcga
gatggaggatggatcgtccactccgatcgttcgtcgtccgcttaggcgtg
ccacgaagaagtatgtcccgctactggcagcaaaggaacctgtaccggat
aaccgtgaatctaataagctccgcgtcgcagcgtcgttttgcgtcccgcc
tgagtcccaaatgatggtgaaagtaacctcccgtcaacacggactccggg
gtttgctaccattgtcgtcactgtatgacaggcacatcctcgcaattgcg
aatggaatcgtccatgtggagccaaaccaaccgtttcacgtgctgatcgc
caaactagggactgtaccccagtatctggtgaagaaccaagtgatagggt
ccgtcatgccgcaccccatcgctatggtgccgacaaagctgaccgcagct
gacgttctcggactcgttcactctaaggagagggacagctcggaacctgt
ttcatcaccagtacccgaggttaaacctgtaacatcagggacgcagccca
tttcaacgagcggtgaccgccccgatccagcccaagaactcgaggacctg
gctctcagccacgtcccggagtcataccgccatcgatcgcgagaactttt
aagggacttcaccactatttgggacagctcccttggtgatgttgccacta
cggaacaccggattgatttgctactggacacccgacccatctctcagcac
ccataccgtgccggacccgccgcacgcgcggaggaaaaggcacaagtgga
taaaattcttcgagcaggattcattgaaccggctcagtcgccgtgggctt
ctccagtagtactggctccaaagcaggatggttcccggaggttttgcgtc
gactaccgtcggttgaatgccgtcaccgtcaaggacgtgtatccaatcca
aagaatgggcgaatacattgactcgctgggcaccgccaccgtctttacaa
ccctgaatgccaattggggatactggcaagttccggtaaggaagcaagac
caggataaaaccgctttcgcgtgtcactccggtctctaccgtttcaaacg
gatgccttttggtcttaccaacgcccccgctactttcgagcgagccatcg
acatcctattggccttcttcaaatggcgtacctgcctggtctacctggat
gacataatcgtcttctcagataatctggacgaacatctcactcatgtgag
ggatatcatgaccacgcttcgagatgcgggtgtcactcttaagttgaaga
gaaatgtaacttcttcacggacaccgtga