Gchil2389.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2389.t1
Unique NameGchil2389.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:311978..313309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2389Gchil2389Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 311978..313309 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2389.t1.stop1Gchil2389.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 311978..311980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2389.t1.CDS1Gchil2389.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 311978..313309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2389.t1.exon1Gchil2389.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 311978..313309 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2389.t1.start1Gchil2389.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 313307..313309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2389.t1Gchil2389.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 311978..313309 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2389.t1 ID=Gchil2389.t1|Name=Gchil2389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=444bp
METAPFSVKPTSVFNRIAVDDLANDFVHGILALVIVVELGNFCQTIIYAT
PTLQREALNRFITFHRVRTLRFLHEPITSRFKSNRLLHQMSRNYNSFRNK
DCFHLSVACFVALALIGIEFVVIFVTTPIFTPITAGATTFDAKLGVTENA
PRTRDVKPGCDDFFVPARGIHKASAVLKCVSTSSSETSGIELKDSISMTN
SINDNIHSFSIRSKTSSNMTTAKLVISIRSIGQGELEMAPFRADIDRDAT
IAVFKAIAEGTLNRPLPSFESNLISYSVEVGAETVIYEEESLGEPYDRLT
SALISRLRSMDVVLNTTSAPWVFVESRTYEERPNIVVSIMVSNRVPQGVV
AIIAVLLVFLRILANARFSSFDDVSYVIMKDIIRDDCALGPLAGNNRTVP
ESIHLRSSICHRSMLCEAVKNTDQRMDSPIENETNLPTTSISN*
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spliced messenger RNA

>Gchil2389.t1 ID=Gchil2389.t1|Name=Gchil2389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00004400_pilon:311978..313309- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACTGCCCCCTTTTCTGTTAAGCCAACTTCAGTCTTTAATCGAAT
AGCTGTCGACGATTTGGCAAACGACTTCGTGCACGGGATACTAGCTCTTG
TGATCGTGGTTGAACTTGGCAACTTCTGCCAGACAATCATTTATGCCACT
CCAACACTCCAAAGAGAAGCACTAAACCGATTCATCACGTTTCACAGGGT
GCGAACATTGCGTTTTTTACATGAACCCATCACTTCCCGCTTCAAAAGCA
ACCGGCTACTCCATCAGATGTCTAGGAATTACAACTCCTTCAGAAACAAG
GACTGTTTCCATCTCTCAGTAGCCTGCTTCGTCGCGCTAGCCCTTATTGG
CATTGAGTTCGTGGTTATTTTTGTCACTACGCCTATTTTCACACCAATTA
CTGCGGGCGCTACCACTTTCGATGCCAAACTCGGTGTAACTGAGAATGCA
CCTCGTACGAGAGACGTGAAGCCCGGCTGCGATGACTTCTTTGTTCCAGC
ACGCGGAATTCACAAGGCTTCGGCGGTGTTGAAGTGTGTCTCAACCTCCT
CCAGTGAAACGTCCGGTATAGAACTTAAAGATTCTATCTCAATGACCAAT
AGCATCAACGATAATATTCACTCATTTTCTATCAGATCGAAAACTAGTTC
AAACATGACAACTGCAAAGTTAGTGATATCCATTAGAAGTATTGGTCAAG
GGGAGCTAGAAATGGCGCCGTTTAGGGCGGACATTGATAGAGATGCGACT
ATTGCAGTTTTCAAAGCTATTGCCGAGGGCACATTGAACCGTCCACTACC
GTCATTCGAAAGCAACTTGATCTCCTATTCAGTAGAAGTTGGTGCGGAGA
CTGTTATTTATGAAGAAGAGAGCTTGGGCGAACCTTACGATCGCCTTACA
AGCGCTCTTATTTCGCGATTGAGAAGTATGGATGTCGTGCTCAATACAAC
CTCAGCCCCCTGGGTATTTGTCGAATCGAGGACGTATGAAGAAAGACCTA
ACATCGTTGTTAGTATCATGGTCTCAAATCGCGTTCCTCAAGGAGTGGTT
GCCATCATTGCAGTGCTTCTAGTTTTCTTGCGAATTCTTGCCAACGCGCG
GTTCTCCTCATTCGATGATGTGTCGTACGTGATCATGAAAGATATAATTC
GAGACGACTGCGCCTTGGGTCCGCTCGCTGGCAACAATCGTACGGTACCA
GAATCGATTCATTTACGTTCCAGTATTTGTCACAGATCTATGCTCTGCGA
AGCTGTGAAAAATACGGATCAACGTATGGATAGCCCCATCGAAAATGAAA
CAAATCTACCTACAACGAGCATATCAAACTAA
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protein sequence of Gchil2389.t1

>Gchil2389.t1 ID=Gchil2389.t1|Name=Gchil2389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=444bp
METAPFSVKPTSVFNRIAVDDLANDFVHGILALVIVVELGNFCQTIIYAT
PTLQREALNRFITFHRVRTLRFLHEPITSRFKSNRLLHQMSRNYNSFRNK
DCFHLSVACFVALALIGIEFVVIFVTTPIFTPITAGATTFDAKLGVTENA
PRTRDVKPGCDDFFVPARGIHKASAVLKCVSTSSSETSGIELKDSISMTN
SINDNIHSFSIRSKTSSNMTTAKLVISIRSIGQGELEMAPFRADIDRDAT
IAVFKAIAEGTLNRPLPSFESNLISYSVEVGAETVIYEEESLGEPYDRLT
SALISRLRSMDVVLNTTSAPWVFVESRTYEERPNIVVSIMVSNRVPQGVV
AIIAVLLVFLRILANARFSSFDDVSYVIMKDIIRDDCALGPLAGNNRTVP
ESIHLRSSICHRSMLCEAVKNTDQRMDSPIENETNLPTTSISN*
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mRNA from alignment at tig00004400_pilon:311978..313309-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2389.t1 ID=Gchil2389.t1|Name=Gchil2389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00004400_pilon:311978..313309- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACTGCCCCCTTTTCTGTTAAGCCAACTTCAGTCTTTAATCGAAT
AGCTGTCGACGATTTGGCAAACGACTTCGTGCACGGGATACTAGCTCTTG
TGATCGTGGTTGAACTTGGCAACTTCTGCCAGACAATCATTTATGCCACT
CCAACACTCCAAAGAGAAGCACTAAACCGATTCATCACGTTTCACAGGGT
GCGAACATTGCGTTTTTTACATGAACCCATCACTTCCCGCTTCAAAAGCA
ACCGGCTACTCCATCAGATGTCTAGGAATTACAACTCCTTCAGAAACAAG
GACTGTTTCCATCTCTCAGTAGCCTGCTTCGTCGCGCTAGCCCTTATTGG
CATTGAGTTCGTGGTTATTTTTGTCACTACGCCTATTTTCACACCAATTA
CTGCGGGCGCTACCACTTTCGATGCCAAACTCGGTGTAACTGAGAATGCA
CCTCGTACGAGAGACGTGAAGCCCGGCTGCGATGACTTCTTTGTTCCAGC
ACGCGGAATTCACAAGGCTTCGGCGGTGTTGAAGTGTGTCTCAACCTCCT
CCAGTGAAACGTCCGGTATAGAACTTAAAGATTCTATCTCAATGACCAAT
AGCATCAACGATAATATTCACTCATTTTCTATCAGATCGAAAACTAGTTC
AAACATGACAACTGCAAAGTTAGTGATATCCATTAGAAGTATTGGTCAAG
GGGAGCTAGAAATGGCGCCGTTTAGGGCGGACATTGATAGAGATGCGACT
ATTGCAGTTTTCAAAGCTATTGCCGAGGGCACATTGAACCGTCCACTACC
GTCATTCGAAAGCAACTTGATCTCCTATTCAGTAGAAGTTGGTGCGGAGA
CTGTTATTTATGAAGAAGAGAGCTTGGGCGAACCTTACGATCGCCTTACA
AGCGCTCTTATTTCGCGATTGAGAAGTATGGATGTCGTGCTCAATACAAC
CTCAGCCCCCTGGGTATTTGTCGAATCGAGGACGTATGAAGAAAGACCTA
ACATCGTTGTTAGTATCATGGTCTCAAATCGCGTTCCTCAAGGAGTGGTT
GCCATCATTGCAGTGCTTCTAGTTTTCTTGCGAATTCTTGCCAACGCGCG
GTTCTCCTCATTCGATGATGTGTCGTACGTGATCATGAAAGATATAATTC
GAGACGACTGCGCCTTGGGTCCGCTCGCTGGCAACAATCGTACGGTACCA
GAATCGATTCATTTACGTTCCAGTATTTGTCACAGATCTATGCTCTGCGA
AGCTGTGAAAAATACGGATCAACGTATGGATAGCCCCATCGAAAATGAAA
CAAATCTACCTACAACGAGCATATCAAACTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:311978..313309-

>Gchil2389.t1 ID=Gchil2389.t1|Name=Gchil2389.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00004400_pilon:311978..313309- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACTGCCCCCTTTTCTGTTAAGCCAACTTCAGTCTTTAATCGAAT
AGCTGTCGACGATTTGGCAAACGACTTCGTGCACGGGATACTAGCTCTTG
TGATCGTGGTTGAACTTGGCAACTTCTGCCAGACAATCATTTATGCCACT
CCAACACTCCAAAGAGAAGCACTAAACCGATTCATCACGTTTCACAGGGT
GCGAACATTGCGTTTTTTACATGAACCCATCACTTCCCGCTTCAAAAGCA
ACCGGCTACTCCATCAGATGTCTAGGAATTACAACTCCTTCAGAAACAAG
GACTGTTTCCATCTCTCAGTAGCCTGCTTCGTCGCGCTAGCCCTTATTGG
CATTGAGTTCGTGGTTATTTTTGTCACTACGCCTATTTTCACACCAATTA
CTGCGGGCGCTACCACTTTCGATGCCAAACTCGGTGTAACTGAGAATGCA
CCTCGTACGAGAGACGTGAAGCCCGGCTGCGATGACTTCTTTGTTCCAGC
ACGCGGAATTCACAAGGCTTCGGCGGTGTTGAAGTGTGTCTCAACCTCCT
CCAGTGAAACGTCCGGTATAGAACTTAAAGATTCTATCTCAATGACCAAT
AGCATCAACGATAATATTCACTCATTTTCTATCAGATCGAAAACTAGTTC
AAACATGACAACTGCAAAGTTAGTGATATCCATTAGAAGTATTGGTCAAG
GGGAGCTAGAAATGGCGCCGTTTAGGGCGGACATTGATAGAGATGCGACT
ATTGCAGTTTTCAAAGCTATTGCCGAGGGCACATTGAACCGTCCACTACC
GTCATTCGAAAGCAACTTGATCTCCTATTCAGTAGAAGTTGGTGCGGAGA
CTGTTATTTATGAAGAAGAGAGCTTGGGCGAACCTTACGATCGCCTTACA
AGCGCTCTTATTTCGCGATTGAGAAGTATGGATGTCGTGCTCAATACAAC
CTCAGCCCCCTGGGTATTTGTCGAATCGAGGACGTATGAAGAAAGACCTA
ACATCGTTGTTAGTATCATGGTCTCAAATCGCGTTCCTCAAGGAGTGGTT
GCCATCATTGCAGTGCTTCTAGTTTTCTTGCGAATTCTTGCCAACGCGCG
GTTCTCCTCATTCGATGATGTGTCGTACGTGATCATGAAAGATATAATTC
GAGACGACTGCGCCTTGGGTCCGCTCGCTGGCAACAATCGTACGGTACCA
GAATCGATTCATTTACGTTCCAGTATTTGTCACAGATCTATGCTCTGCGA
AGCTGTGAAAAATACGGATCAACGTATGGATAGCCCCATCGAAAATGAAA
CAAATCTACCTACAACGAGCATATCAAACTAA
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