Gchil2384.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2384.t1
Unique NameGchil2384.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:303485..304183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S2_32V6.1
PFAMsV-SNARE,V-SNARE_C
Max annot lvl35493|Streptophyta
KEGG koko:K08493
KEGG Pathwayko04130,ko04138,map04130,map04138
GOsGO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006892,GO:0006896,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048280,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827
Evalue1.85e-16
EggNOG OGsKOG1666@1|root,KOG1666@2759|Eukaryota,37QFU@33090|Viridiplantae,3G9IX@35493|Streptophyta
DescriptionVesicle transport v-SNARE
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2384Gchil2384Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 303485..304183 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2384.t1.stop1Gchil2384.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 303485..303487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2384.t1.CDS1Gchil2384.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 303485..304183 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2384.t1.exon1Gchil2384.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 303485..304183 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2384.t1.start1Gchil2384.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 304181..304183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2384.t1Gchil2384.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 303485..304183 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2384.t1 ID=Gchil2384.t1|Name=Gchil2384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=233bp
MSFAQPSLPPLESSFSDYHREFYASLTTANNAVQSAADQQPKQAAQTLLD
ADTALSEAADLLKTLELEAQSQQLQLRNKLRPYVTQGRNALSDAGKALRA
TRIAVSQRQEVADRTNLFDRAPDDVRIQMTSNTSLVERSNELITDSRRHI
AETELIGASILEDLQSQRSTITRARNNLGNMSNGLQQSDSILNTMHRRAM
ANRIMVYVILAIIGIACVAIMYVRIFHSRKRD*
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spliced messenger RNA

>Gchil2384.t1 ID=Gchil2384.t1|Name=Gchil2384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00004400_pilon:303485..304183- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTCGCGCAGCCTTCTCTCCCGCCTCTCGAGTCCTCTTTCTCCGA
CTACCATCGCGAATTCTACGCCTCCCTCACCACCGCCAACAACGCCGTTC
AATCCGCCGCCGACCAACAACCCAAACAAGCAGCCCAAACGCTTCTCGAC
GCCGACACCGCCCTCTCCGAGGCCGCCGATCTGCTCAAGACCCTCGAGCT
AGAGGCGCAATCGCAGCAGCTGCAACTCAGAAACAAGCTCCGTCCCTATG
TCACGCAGGGCCGAAACGCGCTCTCGGACGCCGGTAAGGCTCTGCGAGCC
ACCAGAATCGCCGTTTCACAGCGCCAGGAGGTCGCCGATCGCACCAATTT
GTTCGACCGCGCCCCTGACGATGTGCGCATTCAAATGACGTCGAATACCT
CGCTTGTCGAGAGGAGCAATGAGCTTATCACCGATAGTAGACGCCATATT
GCGGAGACCGAACTTATTGGCGCCTCCATTTTGGAGGATTTGCAGTCGCA
ACGCTCGACCATCACCCGCGCTAGAAACAATCTTGGCAACATGTCTAATG
GCTTGCAACAGAGTGATAGCATCCTCAACACAATGCATCGTCGAGCAATG
GCAAATCGCATCATGGTCTACGTCATATTGGCCATTATTGGCATCGCCTG
TGTGGCCATCATGTATGTGCGCATCTTTCATAGCAGAAAACGTGACTGA
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protein sequence of Gchil2384.t1

>Gchil2384.t1 ID=Gchil2384.t1|Name=Gchil2384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=233bp
MSFAQPSLPPLESSFSDYHREFYASLTTANNAVQSAADQQPKQAAQTLLD
ADTALSEAADLLKTLELEAQSQQLQLRNKLRPYVTQGRNALSDAGKALRA
TRIAVSQRQEVADRTNLFDRAPDDVRIQMTSNTSLVERSNELITDSRRHI
AETELIGASILEDLQSQRSTITRARNNLGNMSNGLQQSDSILNTMHRRAM
ANRIMVYVILAIIGIACVAIMYVRIFHSRKRD*
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mRNA from alignment at tig00004400_pilon:303485..304183-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2384.t1 ID=Gchil2384.t1|Name=Gchil2384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00004400_pilon:303485..304183- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCGCGCAGCCTTCTCTCCCGCCTCTCGAGTCCTCTTTCTCCGA
CTACCATCGCGAATTCTACGCCTCCCTCACCACCGCCAACAACGCCGTTC
AATCCGCCGCCGACCAACAACCCAAACAAGCAGCCCAAACGCTTCTCGAC
GCCGACACCGCCCTCTCCGAGGCCGCCGATCTGCTCAAGACCCTCGAGCT
AGAGGCGCAATCGCAGCAGCTGCAACTCAGAAACAAGCTCCGTCCCTATG
TCACGCAGGGCCGAAACGCGCTCTCGGACGCCGGTAAGGCTCTGCGAGCC
ACCAGAATCGCCGTTTCACAGCGCCAGGAGGTCGCCGATCGCACCAATTT
GTTCGACCGCGCCCCTGACGATGTGCGCATTCAAATGACGTCGAATACCT
CGCTTGTCGAGAGGAGCAATGAGCTTATCACCGATAGTAGACGCCATATT
GCGGAGACCGAACTTATTGGCGCCTCCATTTTGGAGGATTTGCAGTCGCA
ACGCTCGACCATCACCCGCGCTAGAAACAATCTTGGCAACATGTCTAATG
GCTTGCAACAGAGTGATAGCATCCTCAACACAATGCATCGTCGAGCAATG
GCAAATCGCATCATGGTCTACGTCATATTGGCCATTATTGGCATCGCCTG
TGTGGCCATCATGTATGTGCGCATCTTTCATAGCAGAAAACGTGACTGA
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Coding sequence (CDS) from alignment at tig00004400_pilon:303485..304183-

>Gchil2384.t1 ID=Gchil2384.t1|Name=Gchil2384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00004400_pilon:303485..304183- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCGCGCAGCCTTCTCTCCCGCCTCTCGAGTCCTCTTTCTCCGA
CTACCATCGCGAATTCTACGCCTCCCTCACCACCGCCAACAACGCCGTTC
AATCCGCCGCCGACCAACAACCCAAACAAGCAGCCCAAACGCTTCTCGAC
GCCGACACCGCCCTCTCCGAGGCCGCCGATCTGCTCAAGACCCTCGAGCT
AGAGGCGCAATCGCAGCAGCTGCAACTCAGAAACAAGCTCCGTCCCTATG
TCACGCAGGGCCGAAACGCGCTCTCGGACGCCGGTAAGGCTCTGCGAGCC
ACCAGAATCGCCGTTTCACAGCGCCAGGAGGTCGCCGATCGCACCAATTT
GTTCGACCGCGCCCCTGACGATGTGCGCATTCAAATGACGTCGAATACCT
CGCTTGTCGAGAGGAGCAATGAGCTTATCACCGATAGTAGACGCCATATT
GCGGAGACCGAACTTATTGGCGCCTCCATTTTGGAGGATTTGCAGTCGCA
ACGCTCGACCATCACCCGCGCTAGAAACAATCTTGGCAACATGTCTAATG
GCTTGCAACAGAGTGATAGCATCCTCAACACAATGCATCGTCGAGCAATG
GCAAATCGCATCATGGTCTACGTCATATTGGCCATTATTGGCATCGCCTG
TGTGGCCATCATGTATGTGCGCATCTTTCATAGCAGAAAACGTGACTGA
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