Gchil2304.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2304.t1
Unique NameGchil2304.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:1512402..1513763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2304Gchil2304Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 1512402..1513763 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2304.t1.start1Gchil2304.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 1512402..1512404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2304.t1.CDS1Gchil2304.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1512402..1513763 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2304.t1.exon1Gchil2304.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1512402..1513763 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2304.t1.stop1Gchil2304.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 1513761..1513763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2304.t1Gchil2304.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 1512402..1513763 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2304.t1 ID=Gchil2304.t1|Name=Gchil2304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=454bp
MEVLLEPGQISSIINVITDALVAISGFGLISSLNAYGRWKLYKNGKADKD
LHFHETTIIPAILNAFRLRKSSRMVALLLCIQAIICAIIISLKAVAPIGV
SQSKKFRVSRNQTLKGDSLCNQIDPSYPLAQMGEAKRRILVHFESGGDVL
SVGRTGKNSDALLLEDKNSSYGLPFVVNEFNKSIKIKVSAPIGGVNISLD
VSQVVKKDPSSGPTYQNEFAAVFNRLHYPDAWTQYTEGPLYIIYLFRGVA
RERYAFIKCSVPILQLQQGHSSLVTGACNVANIERDTIKSGILLTISPVP
QLLRDLDQEYKTLSISNLGHRWIMLYDTAKILGLEPCGDSYIAYLPFSEV
SEVSIIIVSALGSIAAACMVAAIFSFGLTRRTFDWNGSYERIINLAGNSD
SIQLRSCWDISTNSKANVVITPTTGPEIGYTVQVVPKGFQCTPVPKAEVK
LIK*
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spliced messenger RNA

>Gchil2304.t1 ID=Gchil2304.t1|Name=Gchil2304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00004419_pilon:1512402..1513763+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTTCTGCTCGAACCCGGACAGATCTCATCTATAATCAATGTTAT
CACCGATGCTCTGGTAGCAATATCTGGTTTTGGTCTTATCAGTTCTTTGA
ATGCATATGGCAGATGGAAGCTCTACAAAAACGGGAAAGCCGATAAGGAT
CTACATTTTCACGAAACCACCATCATCCCTGCTATACTGAATGCCTTTCG
TCTTCGGAAGAGCTCTCGTATGGTCGCTCTCCTTTTATGCATACAGGCAA
TTATTTGCGCCATAATAATATCTCTAAAAGCCGTTGCTCCTATCGGAGTA
TCGCAGTCAAAAAAGTTTCGAGTATCTCGAAACCAAACTCTAAAGGGGGA
CTCGCTTTGTAATCAGATAGATCCGTCCTACCCCCTTGCTCAAATGGGAG
AGGCAAAGAGGAGAATCCTTGTCCACTTTGAATCCGGTGGAGATGTGTTA
AGTGTGGGAAGAACAGGAAAAAATTCTGATGCGCTTCTTTTAGAAGACAA
AAATAGCAGCTACGGTCTTCCATTTGTTGTGAACGAGTTTAATAAGTCAA
TCAAGATCAAAGTATCCGCTCCGATTGGAGGCGTAAACATCTCTTTGGAT
GTTTCTCAAGTTGTGAAAAAAGATCCCAGCAGCGGTCCTACATATCAGAA
TGAATTTGCTGCTGTTTTCAACCGACTTCATTATCCAGACGCGTGGACTC
AGTACACAGAAGGCCCGCTGTATATAATATATCTATTTCGTGGTGTTGCC
AGGGAACGGTATGCGTTCATAAAATGTAGTGTACCCATATTGCAACTCCA
ACAAGGTCATTCAAGTCTTGTCACGGGTGCTTGTAATGTTGCGAATATCG
AAAGAGATACCATCAAATCTGGAATACTTCTGACCATTTCTCCAGTGCCT
CAACTTCTGCGAGATTTAGACCAGGAGTACAAAACACTCAGCATATCAAA
TTTAGGGCATAGATGGATCATGCTCTATGATACCGCGAAAATCCTGGGCT
TGGAACCATGTGGTGACTCATATATCGCATACCTTCCGTTTTCCGAAGTT
TCAGAAGTGTCTATTATTATCGTAAGTGCTCTAGGAAGCATTGCAGCGGC
CTGTATGGTGGCTGCAATATTCTCATTTGGTCTCACTCGAAGAACATTCG
ATTGGAATGGCTCTTATGAAAGAATAATCAATCTTGCCGGAAATTCAGAT
TCGATTCAACTTCGTAGCTGCTGGGATATTTCCACGAATTCCAAGGCCAA
CGTTGTAATTACGCCCACAACAGGCCCTGAGATTGGATATACTGTCCAAG
TTGTTCCTAAAGGATTTCAATGTACCCCAGTGCCGAAGGCAGAGGTGAAA
CTTATTAAGTAA
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protein sequence of Gchil2304.t1

>Gchil2304.t1 ID=Gchil2304.t1|Name=Gchil2304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=454bp
MEVLLEPGQISSIINVITDALVAISGFGLISSLNAYGRWKLYKNGKADKD
LHFHETTIIPAILNAFRLRKSSRMVALLLCIQAIICAIIISLKAVAPIGV
SQSKKFRVSRNQTLKGDSLCNQIDPSYPLAQMGEAKRRILVHFESGGDVL
SVGRTGKNSDALLLEDKNSSYGLPFVVNEFNKSIKIKVSAPIGGVNISLD
VSQVVKKDPSSGPTYQNEFAAVFNRLHYPDAWTQYTEGPLYIIYLFRGVA
RERYAFIKCSVPILQLQQGHSSLVTGACNVANIERDTIKSGILLTISPVP
QLLRDLDQEYKTLSISNLGHRWIMLYDTAKILGLEPCGDSYIAYLPFSEV
SEVSIIIVSALGSIAAACMVAAIFSFGLTRRTFDWNGSYERIINLAGNSD
SIQLRSCWDISTNSKANVVITPTTGPEIGYTVQVVPKGFQCTPVPKAEVK
LIK*
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mRNA from alignment at tig00004419_pilon:1512402..1513763+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2304.t1 ID=Gchil2304.t1|Name=Gchil2304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00004419_pilon:1512402..1513763+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGTTCTGCTCGAACCCGGACAGATCTCATCTATAATCAATGTTAT
CACCGATGCTCTGGTAGCAATATCTGGTTTTGGTCTTATCAGTTCTTTGA
ATGCATATGGCAGATGGAAGCTCTACAAAAACGGGAAAGCCGATAAGGAT
CTACATTTTCACGAAACCACCATCATCCCTGCTATACTGAATGCCTTTCG
TCTTCGGAAGAGCTCTCGTATGGTCGCTCTCCTTTTATGCATACAGGCAA
TTATTTGCGCCATAATAATATCTCTAAAAGCCGTTGCTCCTATCGGAGTA
TCGCAGTCAAAAAAGTTTCGAGTATCTCGAAACCAAACTCTAAAGGGGGA
CTCGCTTTGTAATCAGATAGATCCGTCCTACCCCCTTGCTCAAATGGGAG
AGGCAAAGAGGAGAATCCTTGTCCACTTTGAATCCGGTGGAGATGTGTTA
AGTGTGGGAAGAACAGGAAAAAATTCTGATGCGCTTCTTTTAGAAGACAA
AAATAGCAGCTACGGTCTTCCATTTGTTGTGAACGAGTTTAATAAGTCAA
TCAAGATCAAAGTATCCGCTCCGATTGGAGGCGTAAACATCTCTTTGGAT
GTTTCTCAAGTTGTGAAAAAAGATCCCAGCAGCGGTCCTACATATCAGAA
TGAATTTGCTGCTGTTTTCAACCGACTTCATTATCCAGACGCGTGGACTC
AGTACACAGAAGGCCCGCTGTATATAATATATCTATTTCGTGGTGTTGCC
AGGGAACGGTATGCGTTCATAAAATGTAGTGTACCCATATTGCAACTCCA
ACAAGGTCATTCAAGTCTTGTCACGGGTGCTTGTAATGTTGCGAATATCG
AAAGAGATACCATCAAATCTGGAATACTTCTGACCATTTCTCCAGTGCCT
CAACTTCTGCGAGATTTAGACCAGGAGTACAAAACACTCAGCATATCAAA
TTTAGGGCATAGATGGATCATGCTCTATGATACCGCGAAAATCCTGGGCT
TGGAACCATGTGGTGACTCATATATCGCATACCTTCCGTTTTCCGAAGTT
TCAGAAGTGTCTATTATTATCGTAAGTGCTCTAGGAAGCATTGCAGCGGC
CTGTATGGTGGCTGCAATATTCTCATTTGGTCTCACTCGAAGAACATTCG
ATTGGAATGGCTCTTATGAAAGAATAATCAATCTTGCCGGAAATTCAGAT
TCGATTCAACTTCGTAGCTGCTGGGATATTTCCACGAATTCCAAGGCCAA
CGTTGTAATTACGCCCACAACAGGCCCTGAGATTGGATATACTGTCCAAG
TTGTTCCTAAAGGATTTCAATGTACCCCAGTGCCGAAGGCAGAGGTGAAA
CTTATTAAGTAA
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Coding sequence (CDS) from alignment at tig00004419_pilon:1512402..1513763+

>Gchil2304.t1 ID=Gchil2304.t1|Name=Gchil2304.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00004419_pilon:1512402..1513763+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGTTCTGCTCGAACCCGGACAGATCTCATCTATAATCAATGTTAT
CACCGATGCTCTGGTAGCAATATCTGGTTTTGGTCTTATCAGTTCTTTGA
ATGCATATGGCAGATGGAAGCTCTACAAAAACGGGAAAGCCGATAAGGAT
CTACATTTTCACGAAACCACCATCATCCCTGCTATACTGAATGCCTTTCG
TCTTCGGAAGAGCTCTCGTATGGTCGCTCTCCTTTTATGCATACAGGCAA
TTATTTGCGCCATAATAATATCTCTAAAAGCCGTTGCTCCTATCGGAGTA
TCGCAGTCAAAAAAGTTTCGAGTATCTCGAAACCAAACTCTAAAGGGGGA
CTCGCTTTGTAATCAGATAGATCCGTCCTACCCCCTTGCTCAAATGGGAG
AGGCAAAGAGGAGAATCCTTGTCCACTTTGAATCCGGTGGAGATGTGTTA
AGTGTGGGAAGAACAGGAAAAAATTCTGATGCGCTTCTTTTAGAAGACAA
AAATAGCAGCTACGGTCTTCCATTTGTTGTGAACGAGTTTAATAAGTCAA
TCAAGATCAAAGTATCCGCTCCGATTGGAGGCGTAAACATCTCTTTGGAT
GTTTCTCAAGTTGTGAAAAAAGATCCCAGCAGCGGTCCTACATATCAGAA
TGAATTTGCTGCTGTTTTCAACCGACTTCATTATCCAGACGCGTGGACTC
AGTACACAGAAGGCCCGCTGTATATAATATATCTATTTCGTGGTGTTGCC
AGGGAACGGTATGCGTTCATAAAATGTAGTGTACCCATATTGCAACTCCA
ACAAGGTCATTCAAGTCTTGTCACGGGTGCTTGTAATGTTGCGAATATCG
AAAGAGATACCATCAAATCTGGAATACTTCTGACCATTTCTCCAGTGCCT
CAACTTCTGCGAGATTTAGACCAGGAGTACAAAACACTCAGCATATCAAA
TTTAGGGCATAGATGGATCATGCTCTATGATACCGCGAAAATCCTGGGCT
TGGAACCATGTGGTGACTCATATATCGCATACCTTCCGTTTTCCGAAGTT
TCAGAAGTGTCTATTATTATCGTAAGTGCTCTAGGAAGCATTGCAGCGGC
CTGTATGGTGGCTGCAATATTCTCATTTGGTCTCACTCGAAGAACATTCG
ATTGGAATGGCTCTTATGAAAGAATAATCAATCTTGCCGGAAATTCAGAT
TCGATTCAACTTCGTAGCTGCTGGGATATTTCCACGAATTCCAAGGCCAA
CGTTGTAATTACGCCCACAACAGGCCCTGAGATTGGATATACTGTCCAAG
TTGTTCCTAAAGGATTTCAATGTACCCCAGTGCCGAAGGCAGAGGTGAAA
CTTATTAAGTAA
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