Gchil2271.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2271.t1
Unique NameGchil2271.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:493918..495243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2271Gchil2271Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 493918..495243 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2271.t1.start1Gchil2271.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 493918..493920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2271.t1.CDS1Gchil2271.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 493918..495243 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2271.t1.exon1Gchil2271.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 493918..495243 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2271.t1.stop1Gchil2271.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 495241..495243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2271.t1Gchil2271.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 493918..495243 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2271.t1 ID=Gchil2271.t1|Name=Gchil2271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=442bp
MSPSKTFLAVFAVLAFVSRSLGMLVDVDGPYGPKCRDRRTFPYVSCEPQC
APYSENVHRLCQTKQQFGCLYRKCSQNNFQCSLTPETAAASECPNGDIQV
RTVTLRPNFPVEFDLSVNVPAVDLDVVLLLDASESARARLNAVKSELLSF
VRQLEGTAHIGVAIYGGEQSFDEKGIQVLSAAKEDVQSALTALENIPTFP
DSPRTTLTALHSVQNSGAALSLRRWRTIVVLVGNTPGREPECGALFDRNS
IPISLYSNSDGISVIPANLGEPGLDAILPPMQQCSNGFGPSEPQAVEAGQ
ASKIAEKTQGEVINSVRADVLIDAVDRVRRRPNRTHQRKAGAQISISTAS
VEPVNRPYYPRRERVIGCEDKVIVSSTGVPQFVSEPSRITGKVKLELPTG
ICQRGPFSCTIRVIDQVQGHEVMSHWSQPIVNEKKISIQAC*
back to top

spliced messenger RNA

>Gchil2271.t1 ID=Gchil2271.t1|Name=Gchil2271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00004419_pilon:493918..495243+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGTCAAAAACCTTTCTCGCTGTCTTCGCTGTTCTGGCATTCGT
CTCACGATCTCTCGGGATGCTGGTTGATGTGGATGGTCCTTATGGTCCAA
AATGCCGGGATAGAAGAACATTTCCGTACGTTTCCTGTGAACCGCAATGT
GCTCCATACTCAGAAAATGTGCACAGACTCTGTCAGACAAAGCAGCAGTT
TGGATGTCTGTACAGAAAGTGTTCTCAGAACAACTTTCAATGTTCTTTGA
CCCCGGAGACTGCGGCAGCTAGCGAATGTCCAAATGGGGATATTCAGGTT
CGGACTGTAACGCTCCGACCAAATTTTCCGGTCGAGTTCGATCTATCGGT
AAATGTTCCAGCAGTTGACCTTGACGTCGTGCTTCTGCTCGATGCAAGTG
AGTCAGCCAGAGCGCGTTTGAATGCCGTTAAAAGTGAGCTGCTTTCATTT
GTCAGACAGCTGGAAGGAACTGCTCATATTGGTGTCGCTATTTATGGTGG
AGAACAGTCTTTTGACGAAAAAGGAATCCAAGTCTTGTCAGCCGCTAAGG
AAGACGTGCAATCTGCACTCACTGCCCTTGAAAATATTCCCACATTTCCG
GATAGTCCCCGCACGACCTTGACCGCTTTGCATTCAGTTCAAAACTCTGG
GGCAGCCCTCTCGCTCCGCAGGTGGAGAACAATCGTTGTACTTGTCGGGA
ATACGCCCGGCCGAGAACCTGAGTGTGGTGCACTGTTTGATCGCAACAGC
ATACCAATATCCCTCTACTCTAATTCCGATGGTATTTCCGTAATCCCTGC
TAACTTAGGAGAGCCTGGACTGGATGCTATTCTTCCCCCGATGCAACAAT
GCTCAAACGGATTCGGACCCTCAGAGCCGCAAGCTGTGGAAGCTGGACAA
GCAAGTAAGATTGCAGAAAAAACACAGGGTGAAGTTATTAACTCAGTCAG
AGCGGATGTCTTAATCGACGCTGTTGATCGCGTGCGTAGAAGGCCTAACA
GAACACATCAAAGAAAAGCTGGCGCTCAAATTTCCATCTCCACTGCCAGT
GTTGAGCCAGTGAATCGCCCATACTACCCAAGGCGAGAGAGAGTCATTGG
TTGTGAAGACAAGGTTATCGTGAGTTCAACTGGTGTTCCACAGTTTGTTA
GTGAACCTTCTCGGATTACTGGGAAAGTGAAACTCGAACTTCCGACGGGT
ATCTGCCAGAGAGGTCCGTTCAGTTGCACGATCCGTGTCATTGACCAGGT
GCAGGGACACGAGGTTATGAGTCATTGGTCTCAACCCATCGTAAACGAGA
AGAAAATATCCATTCAAGCTTGCTAG
back to top

protein sequence of Gchil2271.t1

>Gchil2271.t1 ID=Gchil2271.t1|Name=Gchil2271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=442bp
MSPSKTFLAVFAVLAFVSRSLGMLVDVDGPYGPKCRDRRTFPYVSCEPQC
APYSENVHRLCQTKQQFGCLYRKCSQNNFQCSLTPETAAASECPNGDIQV
RTVTLRPNFPVEFDLSVNVPAVDLDVVLLLDASESARARLNAVKSELLSF
VRQLEGTAHIGVAIYGGEQSFDEKGIQVLSAAKEDVQSALTALENIPTFP
DSPRTTLTALHSVQNSGAALSLRRWRTIVVLVGNTPGREPECGALFDRNS
IPISLYSNSDGISVIPANLGEPGLDAILPPMQQCSNGFGPSEPQAVEAGQ
ASKIAEKTQGEVINSVRADVLIDAVDRVRRRPNRTHQRKAGAQISISTAS
VEPVNRPYYPRRERVIGCEDKVIVSSTGVPQFVSEPSRITGKVKLELPTG
ICQRGPFSCTIRVIDQVQGHEVMSHWSQPIVNEKKISIQAC*
back to top

mRNA from alignment at tig00004419_pilon:493918..495243+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2271.t1 ID=Gchil2271.t1|Name=Gchil2271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00004419_pilon:493918..495243+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCGTCAAAAACCTTTCTCGCTGTCTTCGCTGTTCTGGCATTCGT
CTCACGATCTCTCGGGATGCTGGTTGATGTGGATGGTCCTTATGGTCCAA
AATGCCGGGATAGAAGAACATTTCCGTACGTTTCCTGTGAACCGCAATGT
GCTCCATACTCAGAAAATGTGCACAGACTCTGTCAGACAAAGCAGCAGTT
TGGATGTCTGTACAGAAAGTGTTCTCAGAACAACTTTCAATGTTCTTTGA
CCCCGGAGACTGCGGCAGCTAGCGAATGTCCAAATGGGGATATTCAGGTT
CGGACTGTAACGCTCCGACCAAATTTTCCGGTCGAGTTCGATCTATCGGT
AAATGTTCCAGCAGTTGACCTTGACGTCGTGCTTCTGCTCGATGCAAGTG
AGTCAGCCAGAGCGCGTTTGAATGCCGTTAAAAGTGAGCTGCTTTCATTT
GTCAGACAGCTGGAAGGAACTGCTCATATTGGTGTCGCTATTTATGGTGG
AGAACAGTCTTTTGACGAAAAAGGAATCCAAGTCTTGTCAGCCGCTAAGG
AAGACGTGCAATCTGCACTCACTGCCCTTGAAAATATTCCCACATTTCCG
GATAGTCCCCGCACGACCTTGACCGCTTTGCATTCAGTTCAAAACTCTGG
GGCAGCCCTCTCGCTCCGCAGGTGGAGAACAATCGTTGTACTTGTCGGGA
ATACGCCCGGCCGAGAACCTGAGTGTGGTGCACTGTTTGATCGCAACAGC
ATACCAATATCCCTCTACTCTAATTCCGATGGTATTTCCGTAATCCCTGC
TAACTTAGGAGAGCCTGGACTGGATGCTATTCTTCCCCCGATGCAACAAT
GCTCAAACGGATTCGGACCCTCAGAGCCGCAAGCTGTGGAAGCTGGACAA
GCAAGTAAGATTGCAGAAAAAACACAGGGTGAAGTTATTAACTCAGTCAG
AGCGGATGTCTTAATCGACGCTGTTGATCGCGTGCGTAGAAGGCCTAACA
GAACACATCAAAGAAAAGCTGGCGCTCAAATTTCCATCTCCACTGCCAGT
GTTGAGCCAGTGAATCGCCCATACTACCCAAGGCGAGAGAGAGTCATTGG
TTGTGAAGACAAGGTTATCGTGAGTTCAACTGGTGTTCCACAGTTTGTTA
GTGAACCTTCTCGGATTACTGGGAAAGTGAAACTCGAACTTCCGACGGGT
ATCTGCCAGAGAGGTCCGTTCAGTTGCACGATCCGTGTCATTGACCAGGT
GCAGGGACACGAGGTTATGAGTCATTGGTCTCAACCCATCGTAAACGAGA
AGAAAATATCCATTCAAGCTTGCTAG
back to top

Coding sequence (CDS) from alignment at tig00004419_pilon:493918..495243+

>Gchil2271.t1 ID=Gchil2271.t1|Name=Gchil2271.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00004419_pilon:493918..495243+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCGTCAAAAACCTTTCTCGCTGTCTTCGCTGTTCTGGCATTCGT
CTCACGATCTCTCGGGATGCTGGTTGATGTGGATGGTCCTTATGGTCCAA
AATGCCGGGATAGAAGAACATTTCCGTACGTTTCCTGTGAACCGCAATGT
GCTCCATACTCAGAAAATGTGCACAGACTCTGTCAGACAAAGCAGCAGTT
TGGATGTCTGTACAGAAAGTGTTCTCAGAACAACTTTCAATGTTCTTTGA
CCCCGGAGACTGCGGCAGCTAGCGAATGTCCAAATGGGGATATTCAGGTT
CGGACTGTAACGCTCCGACCAAATTTTCCGGTCGAGTTCGATCTATCGGT
AAATGTTCCAGCAGTTGACCTTGACGTCGTGCTTCTGCTCGATGCAAGTG
AGTCAGCCAGAGCGCGTTTGAATGCCGTTAAAAGTGAGCTGCTTTCATTT
GTCAGACAGCTGGAAGGAACTGCTCATATTGGTGTCGCTATTTATGGTGG
AGAACAGTCTTTTGACGAAAAAGGAATCCAAGTCTTGTCAGCCGCTAAGG
AAGACGTGCAATCTGCACTCACTGCCCTTGAAAATATTCCCACATTTCCG
GATAGTCCCCGCACGACCTTGACCGCTTTGCATTCAGTTCAAAACTCTGG
GGCAGCCCTCTCGCTCCGCAGGTGGAGAACAATCGTTGTACTTGTCGGGA
ATACGCCCGGCCGAGAACCTGAGTGTGGTGCACTGTTTGATCGCAACAGC
ATACCAATATCCCTCTACTCTAATTCCGATGGTATTTCCGTAATCCCTGC
TAACTTAGGAGAGCCTGGACTGGATGCTATTCTTCCCCCGATGCAACAAT
GCTCAAACGGATTCGGACCCTCAGAGCCGCAAGCTGTGGAAGCTGGACAA
GCAAGTAAGATTGCAGAAAAAACACAGGGTGAAGTTATTAACTCAGTCAG
AGCGGATGTCTTAATCGACGCTGTTGATCGCGTGCGTAGAAGGCCTAACA
GAACACATCAAAGAAAAGCTGGCGCTCAAATTTCCATCTCCACTGCCAGT
GTTGAGCCAGTGAATCGCCCATACTACCCAAGGCGAGAGAGAGTCATTGG
TTGTGAAGACAAGGTTATCGTGAGTTCAACTGGTGTTCCACAGTTTGTTA
GTGAACCTTCTCGGATTACTGGGAAAGTGAAACTCGAACTTCCGACGGGT
ATCTGCCAGAGAGGTCCGTTCAGTTGCACGATCCGTGTCATTGACCAGGT
GCAGGGACACGAGGTTATGAGTCATTGGTCTCAACCCATCGTAAACGAGA
AGAAAATATCCATTCAAGCTTGCTAG
back to top