Gchil2152.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2152.t1
Unique NameGchil2152.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:61441..62880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2152Gchil2152Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 61441..62880 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2152.t1.start1Gchil2152.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 61441..61443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2152.t1.CDS1Gchil2152.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 61441..62880 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2152.t1.exon1Gchil2152.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 61441..62880 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2152.t1.stop1Gchil2152.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 62878..62880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2152.t1Gchil2152.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 61441..62880 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2152.t1 ID=Gchil2152.t1|Name=Gchil2152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MGKCPSWYLHSYKTALSILLAAAVHFKQALATQKANIFIDAQHRQDPLVQ
AVTLTTFNVLHLTPFKPQTVFHKGYLLSKWKSCSQQAKPKACITLPIHQD
RIAFLYTYKKERHAEYRLKSPQVSSRTNRSDSSVTTYRHAFGKAWFTLLF
RCRRNTIQQWNEVFDLTVPITDHYSIQTTLIKRCASGVSHPFLQVGFIQN
DQLRLWDHNELDAIRVSASTAVTPLIIRLKNPAWALQHGKPSMKTTKQLL
SISTRGVSSNGTFLQGDNKMWLLYTCHQSGVASAYLKIDLGPWKALTMHF
NKSCGGSVANGLNIGTTRKFKDVIDNGITQPSFVLTPGNETSLQTLPASK
RSLTVSVSNNGLDTLNMGRAHITLHNASVLEVRIRNWDTMALYHGHRRPL
RLETKCKRNGTAVIQVSIPVLQHQAAEFWVRKLCAPLGKERTMVTTAAML
TVGVVVSLSAQRIWRKREVRGYRLVPLSS*
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spliced messenger RNA

>Gchil2152.t1 ID=Gchil2152.t1|Name=Gchil2152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000228_pilon:61441..62880+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGTGCCCCTCTTGGTACTTGCATTCGTACAAAACAGCACTATC
GATACTCCTCGCAGCTGCGGTGCACTTCAAGCAAGCTCTTGCAACACAAA
AAGCAAATATATTCATAGACGCTCAACATCGACAAGACCCCCTAGTACAA
GCCGTAACCCTGACAACCTTCAACGTGCTGCACCTCACACCGTTCAAACC
ACAAACCGTATTTCACAAAGGATACCTTCTTTCTAAGTGGAAATCGTGTT
CACAACAAGCGAAGCCGAAAGCGTGCATTACACTGCCCATCCATCAAGAT
CGAATTGCTTTTCTGTACACATATAAAAAAGAACGTCATGCCGAGTATCG
ATTAAAATCACCACAAGTATCGAGCCGGACAAATCGTTCCGATTCCAGCG
TCACGACCTACAGACATGCATTTGGAAAAGCTTGGTTCACACTGCTATTC
CGTTGTCGACGTAACACTATTCAGCAATGGAACGAAGTGTTTGACTTAAC
TGTGCCAATAACAGACCATTATTCGATACAAACCACTCTGATAAAGCGGT
GCGCCAGCGGAGTAAGTCACCCTTTTCTTCAAGTCGGTTTCATTCAAAAC
GATCAGCTTCGCCTCTGGGACCACAATGAACTAGATGCGATTCGCGTATC
AGCATCTACGGCAGTAACACCCCTTATCATCCGTTTAAAGAATCCAGCAT
GGGCCTTGCAACACGGTAAACCGAGCATGAAGACGACCAAGCAACTACTT
TCGATCAGCACACGCGGTGTCTCGTCAAACGGAACCTTCCTGCAAGGCGA
TAACAAAATGTGGCTTCTCTACACCTGTCACCAATCTGGAGTAGCCTCTG
CCTATCTGAAAATTGACCTCGGCCCATGGAAAGCACTCACAATGCACTTT
AACAAGAGCTGTGGCGGATCTGTGGCAAACGGTTTAAACATCGGCACTAC
TCGCAAATTCAAAGATGTGATCGACAACGGGATCACGCAACCGTCCTTTG
TTCTCACGCCAGGTAACGAAACAAGTCTTCAGACCTTGCCTGCTTCGAAG
CGCTCACTTACGGTTTCCGTTAGCAATAACGGATTAGATACATTGAACAT
GGGCAGAGCTCATATTACGCTACATAACGCCAGCGTGCTAGAAGTTAGAA
TTCGTAATTGGGACACCATGGCATTGTATCACGGACACCGCCGCCCACTC
CGCCTCGAAACAAAGTGCAAGCGAAACGGCACAGCGGTCATACAAGTGAG
CATACCTGTACTGCAACACCAAGCTGCCGAGTTCTGGGTCCGCAAGCTTT
GCGCCCCCCTTGGAAAGGAAAGGACAATGGTAACGACCGCAGCGATGTTG
ACGGTGGGCGTCGTGGTCAGCCTGTCGGCTCAACGCATCTGGCGAAAACG
TGAGGTTCGCGGCTATCGGCTCGTGCCACTATCTAGCTAG
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protein sequence of Gchil2152.t1

>Gchil2152.t1 ID=Gchil2152.t1|Name=Gchil2152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MGKCPSWYLHSYKTALSILLAAAVHFKQALATQKANIFIDAQHRQDPLVQ
AVTLTTFNVLHLTPFKPQTVFHKGYLLSKWKSCSQQAKPKACITLPIHQD
RIAFLYTYKKERHAEYRLKSPQVSSRTNRSDSSVTTYRHAFGKAWFTLLF
RCRRNTIQQWNEVFDLTVPITDHYSIQTTLIKRCASGVSHPFLQVGFIQN
DQLRLWDHNELDAIRVSASTAVTPLIIRLKNPAWALQHGKPSMKTTKQLL
SISTRGVSSNGTFLQGDNKMWLLYTCHQSGVASAYLKIDLGPWKALTMHF
NKSCGGSVANGLNIGTTRKFKDVIDNGITQPSFVLTPGNETSLQTLPASK
RSLTVSVSNNGLDTLNMGRAHITLHNASVLEVRIRNWDTMALYHGHRRPL
RLETKCKRNGTAVIQVSIPVLQHQAAEFWVRKLCAPLGKERTMVTTAAML
TVGVVVSLSAQRIWRKREVRGYRLVPLSS*
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mRNA from alignment at tig00000228_pilon:61441..62880+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2152.t1 ID=Gchil2152.t1|Name=Gchil2152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000228_pilon:61441..62880+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAAGTGCCCCTCTTGGTACTTGCATTCGTACAAAACAGCACTATC
GATACTCCTCGCAGCTGCGGTGCACTTCAAGCAAGCTCTTGCAACACAAA
AAGCAAATATATTCATAGACGCTCAACATCGACAAGACCCCCTAGTACAA
GCCGTAACCCTGACAACCTTCAACGTGCTGCACCTCACACCGTTCAAACC
ACAAACCGTATTTCACAAAGGATACCTTCTTTCTAAGTGGAAATCGTGTT
CACAACAAGCGAAGCCGAAAGCGTGCATTACACTGCCCATCCATCAAGAT
CGAATTGCTTTTCTGTACACATATAAAAAAGAACGTCATGCCGAGTATCG
ATTAAAATCACCACAAGTATCGAGCCGGACAAATCGTTCCGATTCCAGCG
TCACGACCTACAGACATGCATTTGGAAAAGCTTGGTTCACACTGCTATTC
CGTTGTCGACGTAACACTATTCAGCAATGGAACGAAGTGTTTGACTTAAC
TGTGCCAATAACAGACCATTATTCGATACAAACCACTCTGATAAAGCGGT
GCGCCAGCGGAGTAAGTCACCCTTTTCTTCAAGTCGGTTTCATTCAAAAC
GATCAGCTTCGCCTCTGGGACCACAATGAACTAGATGCGATTCGCGTATC
AGCATCTACGGCAGTAACACCCCTTATCATCCGTTTAAAGAATCCAGCAT
GGGCCTTGCAACACGGTAAACCGAGCATGAAGACGACCAAGCAACTACTT
TCGATCAGCACACGCGGTGTCTCGTCAAACGGAACCTTCCTGCAAGGCGA
TAACAAAATGTGGCTTCTCTACACCTGTCACCAATCTGGAGTAGCCTCTG
CCTATCTGAAAATTGACCTCGGCCCATGGAAAGCACTCACAATGCACTTT
AACAAGAGCTGTGGCGGATCTGTGGCAAACGGTTTAAACATCGGCACTAC
TCGCAAATTCAAAGATGTGATCGACAACGGGATCACGCAACCGTCCTTTG
TTCTCACGCCAGGTAACGAAACAAGTCTTCAGACCTTGCCTGCTTCGAAG
CGCTCACTTACGGTTTCCGTTAGCAATAACGGATTAGATACATTGAACAT
GGGCAGAGCTCATATTACGCTACATAACGCCAGCGTGCTAGAAGTTAGAA
TTCGTAATTGGGACACCATGGCATTGTATCACGGACACCGCCGCCCACTC
CGCCTCGAAACAAAGTGCAAGCGAAACGGCACAGCGGTCATACAAGTGAG
CATACCTGTACTGCAACACCAAGCTGCCGAGTTCTGGGTCCGCAAGCTTT
GCGCCCCCCTTGGAAAGGAAAGGACAATGGTAACGACCGCAGCGATGTTG
ACGGTGGGCGTCGTGGTCAGCCTGTCGGCTCAACGCATCTGGCGAAAACG
TGAGGTTCGCGGCTATCGGCTCGTGCCACTATCTAGCTAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:61441..62880+

>Gchil2152.t1 ID=Gchil2152.t1|Name=Gchil2152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000228_pilon:61441..62880+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAAGTGCCCCTCTTGGTACTTGCATTCGTACAAAACAGCACTATC
GATACTCCTCGCAGCTGCGGTGCACTTCAAGCAAGCTCTTGCAACACAAA
AAGCAAATATATTCATAGACGCTCAACATCGACAAGACCCCCTAGTACAA
GCCGTAACCCTGACAACCTTCAACGTGCTGCACCTCACACCGTTCAAACC
ACAAACCGTATTTCACAAAGGATACCTTCTTTCTAAGTGGAAATCGTGTT
CACAACAAGCGAAGCCGAAAGCGTGCATTACACTGCCCATCCATCAAGAT
CGAATTGCTTTTCTGTACACATATAAAAAAGAACGTCATGCCGAGTATCG
ATTAAAATCACCACAAGTATCGAGCCGGACAAATCGTTCCGATTCCAGCG
TCACGACCTACAGACATGCATTTGGAAAAGCTTGGTTCACACTGCTATTC
CGTTGTCGACGTAACACTATTCAGCAATGGAACGAAGTGTTTGACTTAAC
TGTGCCAATAACAGACCATTATTCGATACAAACCACTCTGATAAAGCGGT
GCGCCAGCGGAGTAAGTCACCCTTTTCTTCAAGTCGGTTTCATTCAAAAC
GATCAGCTTCGCCTCTGGGACCACAATGAACTAGATGCGATTCGCGTATC
AGCATCTACGGCAGTAACACCCCTTATCATCCGTTTAAAGAATCCAGCAT
GGGCCTTGCAACACGGTAAACCGAGCATGAAGACGACCAAGCAACTACTT
TCGATCAGCACACGCGGTGTCTCGTCAAACGGAACCTTCCTGCAAGGCGA
TAACAAAATGTGGCTTCTCTACACCTGTCACCAATCTGGAGTAGCCTCTG
CCTATCTGAAAATTGACCTCGGCCCATGGAAAGCACTCACAATGCACTTT
AACAAGAGCTGTGGCGGATCTGTGGCAAACGGTTTAAACATCGGCACTAC
TCGCAAATTCAAAGATGTGATCGACAACGGGATCACGCAACCGTCCTTTG
TTCTCACGCCAGGTAACGAAACAAGTCTTCAGACCTTGCCTGCTTCGAAG
CGCTCACTTACGGTTTCCGTTAGCAATAACGGATTAGATACATTGAACAT
GGGCAGAGCTCATATTACGCTACATAACGCCAGCGTGCTAGAAGTTAGAA
TTCGTAATTGGGACACCATGGCATTGTATCACGGACACCGCCGCCCACTC
CGCCTCGAAACAAAGTGCAAGCGAAACGGCACAGCGGTCATACAAGTGAG
CATACCTGTACTGCAACACCAAGCTGCCGAGTTCTGGGTCCGCAAGCTTT
GCGCCCCCCTTGGAAAGGAAAGGACAATGGTAACGACCGCAGCGATGTTG
ACGGTGGGCGTCGTGGTCAGCCTGTCGGCTCAACGCATCTGGCGAAAACG
TGAGGTTCGCGGCTATCGGCTCGTGCCACTATCTAGCTAG
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