Gchil2104.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2104.t1
Unique NameGchil2104.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length73
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:1095730..1096130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2104Gchil2104Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 1095730..1096130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2104.t1Gchil2104.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 1095730..1096130 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2104.t1.stop1Gchil2104.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 1095730..1095732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2104.t1.CDS1Gchil2104.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 1095730..1095830 -
Gchil2104.t1.CDS2Gchil2104.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 1095919..1096017 -
Gchil2104.t1.CDS3Gchil2104.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 1096112..1096130 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2104.t1.exon1Gchil2104.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 1095730..1095830 -
Gchil2104.t1.exon2Gchil2104.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 1095919..1096017 -
Gchil2104.t1.exon3Gchil2104.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 1096112..1096130 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2104.t1.intron1Gchil2104.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 1095831..1095918 -
Gchil2104.t1.intron2Gchil2104.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 1096018..1096111 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2104.t1.start1Gchil2104.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 1096128..1096130 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2104.t1 ID=Gchil2104.t1|Name=Gchil2104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=73bp
MTPSNVQAQRKALIKVQTLNGGARINCVNNWRYRRELKLSALPLSLATSI
SDGIGGKRVKGGRLFAVWCHIA*
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spliced messenger RNA

>Gchil2104.t1 ID=Gchil2104.t1|Name=Gchil2104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp|location=Sequence derived from alignment at tig00000019_pilon:1095730..1096130- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCATCAAACGTACAAGCGCAGCGAAAGGCACTTATCAAAGTGCA
AACCTTGAATGGGGGCGCACGCATCAACTGTGTGAACAACTGGAGATACA
GACGCGAGTTGAAACTAAGTGCTCTCCCATTGAGTTTAGCAACATCAATA
TCGGACGGAATAGGGGGCAAACGAGTAAAAGGCGGGAGGCTGTTTGCTGT
TTGGTGTCACATAGCGTAG
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protein sequence of Gchil2104.t1

>Gchil2104.t1 ID=Gchil2104.t1|Name=Gchil2104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=73bp
MTPSNVQAQRKALIKVQTLNGGARINCVNNWRYRRELKLSALPLSLATSI
SDGIGGKRVKGGRLFAVWCHIA*
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mRNA from alignment at tig00000019_pilon:1095730..1096130-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2104.t1 ID=Gchil2104.t1|Name=Gchil2104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=401bp|location=Sequence derived from alignment at tig00000019_pilon:1095730..1096130- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCCATCAAACGTACGTGCGTGCAGTATAGAGCGCCATTAAGAATG
TTGGTCAAGTGCTCGATCGTTCTCTTGAACAACATCGTGAGAGACATCGA
ACGCAACGAGCAGAAGCGCAGCGAAAGGCACTTATCAAAGTGCAAACCTT
GAATGGGGGCGCACGCATCAACTGTGTGAACAACTGGAGATACAGACGCG
AGTTGAAACTAAGTACTTTCGGATATCACCTGCGCATTCTCCGGCTTTGA
CTGTCCCATTGCTGACCTTCTCGTTTAATCAAACATGCTACTCCGCTGAG
GTGCTCTCCCATTGAGTTTAGCAACATCAATATCGGACGGAATAGGGGGC
AAACGAGTAAAAGGCGGGAGGCTGTTTGCTGTTTGGTGTCACATAGCGTA
G
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Coding sequence (CDS) from alignment at tig00000019_pilon:1095730..1096130-

>Gchil2104.t1 ID=Gchil2104.t1|Name=Gchil2104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=219bp|location=Sequence derived from alignment at tig00000019_pilon:1095730..1096130- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCCATCAAACGTACAAGCGCAGCGAAAGGCACTTATCAAAGTGCA
AACCTTGAATGGGGGCGCACGCATCAACTGTGTGAACAACTGGAGATACA
GACGCGAGTTGAAACTAAGTGCTCTCCCATTGAGTTTAGCAACATCAATA
TCGGACGGAATAGGGGGCAAACGAGTAAAAGGCGGGAGGCTGTTTGCTGT
TTGGTGTCACATAGCGTAG
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