Gchil2063.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2063.t1
Unique NameGchil2063.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:370465..371790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707089.1
PFAMsDUF563
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
Evalue3.94e-20
EggNOG OGs2E70N@1|root,2SDNQ@2759|Eukaryota
EC2.4.1.255
DescriptionProtein of unknown function (DUF563)
COG categoryS
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2063Gchil2063Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 370465..371790 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2063.t1.stop1Gchil2063.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 370465..370467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2063.t1.CDS1Gchil2063.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 370465..371790 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2063.t1.exon1Gchil2063.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 370465..371790 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2063.t1.start1Gchil2063.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 371788..371790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2063.t1Gchil2063.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 370465..371790 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2063.t1 ID=Gchil2063.t1|Name=Gchil2063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=442bp
MQIQRLVFVITFAGSLAFDFCHSDPRIQVYEDRPQSTSSQSCPTAIYLPV
LDRNPNHALHDRLWALSHYLQHCTDTRSTLVLNDHLLYNLSLCKAEDTSP
NSKRPTWGTCLAFILSQRHDMLLYFSPSRIWPDKVFKMPDSCYSRHIWLG
VQPSATDTNDLGVRVSHFRKFSWFGRNCEEQMPCLGGLGPLPESLQMSAL
SNIVSAVQAFLEIEFIPQDAVNILVYDRSDTFRRRWNGAKDVYDKLKFDT
RINVQLIHRMPGSFSKQVRLFAWANIVLAPHGGAMANTIFMQSGGDILEM
RRNCEADTRFANFMPWDWTGWHAHLLGLNLIYIGCTTEKQKTEIPNGIEQ
DKTKFTVNVTEVLRVIEGCIRRQIHRRDVAKRSRSLSEKSSEDEDEEMLY
LVHKEFQNITMIEFLFLVSITSVIIIGSKLCSRRRQITRRT*
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spliced messenger RNA

>Gchil2063.t1 ID=Gchil2063.t1|Name=Gchil2063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000019_pilon:370465..371790- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATACAGAGGTTGGTTTTTGTCATAACATTTGCAGGATCATTAGC
CTTCGACTTCTGCCATTCTGATCCTCGCATTCAAGTGTACGAAGACAGAC
CTCAATCAACATCTTCACAATCATGTCCAACGGCAATCTATCTCCCGGTG
CTGGACCGAAATCCAAATCACGCCCTCCACGATCGGTTATGGGCTTTATC
GCATTACTTACAGCATTGTACCGACACAAGGTCAACTCTGGTATTAAATG
ACCATTTGCTCTACAATCTCAGTTTGTGCAAAGCAGAAGACACCTCGCCG
AATTCAAAACGCCCAACATGGGGAACGTGCCTGGCCTTCATTCTCTCTCA
GCGGCACGATATGTTGCTATACTTCTCGCCGAGCCGTATCTGGCCGGATA
AGGTATTTAAGATGCCTGATTCTTGTTACTCTCGGCACATTTGGCTTGGG
GTACAACCATCAGCGACCGATACCAACGATTTAGGGGTCAGAGTATCCCA
TTTTCGCAAATTCAGTTGGTTTGGACGAAATTGCGAAGAGCAGATGCCAT
GTCTTGGTGGGTTAGGTCCATTGCCAGAGTCCTTGCAAATGTCCGCATTG
AGCAATATTGTGTCTGCAGTTCAAGCCTTTCTCGAGATTGAATTTATTCC
ACAAGACGCTGTTAATATTCTAGTGTATGATCGCAGCGATACGTTCCGAC
GGAGATGGAATGGTGCCAAGGATGTCTATGACAAGCTGAAATTTGATACA
AGGATCAATGTCCAGCTTATACATCGAATGCCCGGAAGCTTCTCGAAGCA
AGTGAGGCTTTTCGCATGGGCCAATATAGTGCTTGCGCCTCACGGAGGAG
CAATGGCCAATACGATTTTCATGCAAAGCGGAGGCGATATTCTCGAAATG
CGAAGAAATTGCGAGGCTGACACACGGTTCGCGAACTTCATGCCTTGGGA
TTGGACTGGATGGCACGCTCATCTGCTCGGACTCAATCTCATTTACATAG
GATGCACCACGGAGAAGCAGAAGACGGAAATCCCAAATGGGATAGAACAA
GATAAAACAAAGTTCACCGTGAACGTGACTGAAGTACTGAGAGTCATCGA
GGGATGTATCCGGCGACAAATTCATCGAAGGGACGTAGCAAAAAGGTCTC
GATCACTAAGTGAAAAATCATCGGAGGATGAAGATGAAGAGATGCTCTAC
CTGGTACACAAAGAATTTCAAAATATCACGATGATTGAGTTCTTGTTCCT
TGTCTCCATTACAAGCGTTATCATTATTGGATCCAAGCTCTGCTCTCGAA
GAAGACAAATAACGAGAAGAACGTGA
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protein sequence of Gchil2063.t1

>Gchil2063.t1 ID=Gchil2063.t1|Name=Gchil2063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=442bp
MQIQRLVFVITFAGSLAFDFCHSDPRIQVYEDRPQSTSSQSCPTAIYLPV
LDRNPNHALHDRLWALSHYLQHCTDTRSTLVLNDHLLYNLSLCKAEDTSP
NSKRPTWGTCLAFILSQRHDMLLYFSPSRIWPDKVFKMPDSCYSRHIWLG
VQPSATDTNDLGVRVSHFRKFSWFGRNCEEQMPCLGGLGPLPESLQMSAL
SNIVSAVQAFLEIEFIPQDAVNILVYDRSDTFRRRWNGAKDVYDKLKFDT
RINVQLIHRMPGSFSKQVRLFAWANIVLAPHGGAMANTIFMQSGGDILEM
RRNCEADTRFANFMPWDWTGWHAHLLGLNLIYIGCTTEKQKTEIPNGIEQ
DKTKFTVNVTEVLRVIEGCIRRQIHRRDVAKRSRSLSEKSSEDEDEEMLY
LVHKEFQNITMIEFLFLVSITSVIIIGSKLCSRRRQITRRT*
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mRNA from alignment at tig00000019_pilon:370465..371790-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2063.t1 ID=Gchil2063.t1|Name=Gchil2063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000019_pilon:370465..371790- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGATACAGAGGTTGGTTTTTGTCATAACATTTGCAGGATCATTAGC
CTTCGACTTCTGCCATTCTGATCCTCGCATTCAAGTGTACGAAGACAGAC
CTCAATCAACATCTTCACAATCATGTCCAACGGCAATCTATCTCCCGGTG
CTGGACCGAAATCCAAATCACGCCCTCCACGATCGGTTATGGGCTTTATC
GCATTACTTACAGCATTGTACCGACACAAGGTCAACTCTGGTATTAAATG
ACCATTTGCTCTACAATCTCAGTTTGTGCAAAGCAGAAGACACCTCGCCG
AATTCAAAACGCCCAACATGGGGAACGTGCCTGGCCTTCATTCTCTCTCA
GCGGCACGATATGTTGCTATACTTCTCGCCGAGCCGTATCTGGCCGGATA
AGGTATTTAAGATGCCTGATTCTTGTTACTCTCGGCACATTTGGCTTGGG
GTACAACCATCAGCGACCGATACCAACGATTTAGGGGTCAGAGTATCCCA
TTTTCGCAAATTCAGTTGGTTTGGACGAAATTGCGAAGAGCAGATGCCAT
GTCTTGGTGGGTTAGGTCCATTGCCAGAGTCCTTGCAAATGTCCGCATTG
AGCAATATTGTGTCTGCAGTTCAAGCCTTTCTCGAGATTGAATTTATTCC
ACAAGACGCTGTTAATATTCTAGTGTATGATCGCAGCGATACGTTCCGAC
GGAGATGGAATGGTGCCAAGGATGTCTATGACAAGCTGAAATTTGATACA
AGGATCAATGTCCAGCTTATACATCGAATGCCCGGAAGCTTCTCGAAGCA
AGTGAGGCTTTTCGCATGGGCCAATATAGTGCTTGCGCCTCACGGAGGAG
CAATGGCCAATACGATTTTCATGCAAAGCGGAGGCGATATTCTCGAAATG
CGAAGAAATTGCGAGGCTGACACACGGTTCGCGAACTTCATGCCTTGGGA
TTGGACTGGATGGCACGCTCATCTGCTCGGACTCAATCTCATTTACATAG
GATGCACCACGGAGAAGCAGAAGACGGAAATCCCAAATGGGATAGAACAA
GATAAAACAAAGTTCACCGTGAACGTGACTGAAGTACTGAGAGTCATCGA
GGGATGTATCCGGCGACAAATTCATCGAAGGGACGTAGCAAAAAGGTCTC
GATCACTAAGTGAAAAATCATCGGAGGATGAAGATGAAGAGATGCTCTAC
CTGGTACACAAAGAATTTCAAAATATCACGATGATTGAGTTCTTGTTCCT
TGTCTCCATTACAAGCGTTATCATTATTGGATCCAAGCTCTGCTCTCGAA
GAAGACAAATAACGAGAAGAACGTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:370465..371790-

>Gchil2063.t1 ID=Gchil2063.t1|Name=Gchil2063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000019_pilon:370465..371790- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGATACAGAGGTTGGTTTTTGTCATAACATTTGCAGGATCATTAGC
CTTCGACTTCTGCCATTCTGATCCTCGCATTCAAGTGTACGAAGACAGAC
CTCAATCAACATCTTCACAATCATGTCCAACGGCAATCTATCTCCCGGTG
CTGGACCGAAATCCAAATCACGCCCTCCACGATCGGTTATGGGCTTTATC
GCATTACTTACAGCATTGTACCGACACAAGGTCAACTCTGGTATTAAATG
ACCATTTGCTCTACAATCTCAGTTTGTGCAAAGCAGAAGACACCTCGCCG
AATTCAAAACGCCCAACATGGGGAACGTGCCTGGCCTTCATTCTCTCTCA
GCGGCACGATATGTTGCTATACTTCTCGCCGAGCCGTATCTGGCCGGATA
AGGTATTTAAGATGCCTGATTCTTGTTACTCTCGGCACATTTGGCTTGGG
GTACAACCATCAGCGACCGATACCAACGATTTAGGGGTCAGAGTATCCCA
TTTTCGCAAATTCAGTTGGTTTGGACGAAATTGCGAAGAGCAGATGCCAT
GTCTTGGTGGGTTAGGTCCATTGCCAGAGTCCTTGCAAATGTCCGCATTG
AGCAATATTGTGTCTGCAGTTCAAGCCTTTCTCGAGATTGAATTTATTCC
ACAAGACGCTGTTAATATTCTAGTGTATGATCGCAGCGATACGTTCCGAC
GGAGATGGAATGGTGCCAAGGATGTCTATGACAAGCTGAAATTTGATACA
AGGATCAATGTCCAGCTTATACATCGAATGCCCGGAAGCTTCTCGAAGCA
AGTGAGGCTTTTCGCATGGGCCAATATAGTGCTTGCGCCTCACGGAGGAG
CAATGGCCAATACGATTTTCATGCAAAGCGGAGGCGATATTCTCGAAATG
CGAAGAAATTGCGAGGCTGACACACGGTTCGCGAACTTCATGCCTTGGGA
TTGGACTGGATGGCACGCTCATCTGCTCGGACTCAATCTCATTTACATAG
GATGCACCACGGAGAAGCAGAAGACGGAAATCCCAAATGGGATAGAACAA
GATAAAACAAAGTTCACCGTGAACGTGACTGAAGTACTGAGAGTCATCGA
GGGATGTATCCGGCGACAAATTCATCGAAGGGACGTAGCAAAAAGGTCTC
GATCACTAAGTGAAAAATCATCGGAGGATGAAGATGAAGAGATGCTCTAC
CTGGTACACAAAGAATTTCAAAATATCACGATGATTGAGTTCTTGTTCCT
TGTCTCCATTACAAGCGTTATCATTATTGGATCCAAGCTCTGCTCTCGAA
GAAGACAAATAACGAGAAGAACGTGA
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