Gchil2058.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2058.t1
Unique Name	Gchil2058.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:360013..361068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705248.1
Preferred name	GS1
PFAMs	Gln-synt_C,Gln-synt_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010,RC02798
KEGG ko	ko:K01915
KEGG Reaction	R00253
KEGG Pathway	ko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
GOs	GO:0003674,GO:0003735,GO:0003824,GO:0004356,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006541,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009064,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010150,GO:0016020,GO:0016211,GO:0016874,GO:0016879,GO:0016880,GO:0019676,GO:0019740,GO:0019752,GO:0022626,GO:0030054,GO:0030312,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0042126,GO:0042128,GO:0042221,GO:0042651,GO:0042788,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0055035,GO:0055044,GO:0071704,GO:0071941,GO:0071944,GO:0090693,GO:0099402,GO:1901564,GO:1901605,GO:1990904,GO:2001057
Evalue	3.02e-163
EggNOG OGs	COG0174@1\|root,KOG0683@2759\|Eukaryota
EC	6.3.1.2
Description	glutamine biosynthetic process
COG category	E
BRITE	ko00000,ko00001,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2058	Gchil2058	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 360013..361068 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2058.t1.start1	Gchil2058.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 360013..360015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2058.t1.CDS1	Gchil2058.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 360013..361068 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2058.t1.exon1	Gchil2058.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 360013..361068 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2058.t1.stop1	Gchil2058.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 361066..361068 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2058.t1	Gchil2058.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 360013..361068 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:360013..361068+
coding sequence from alignment at tig00000019_pilon:360013..361068+

mRNA sequence

>Gchil2058.t1 ID=Gchil2058.t1|Name=Gchil2058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MAEMLVSLLDLQTDTGCIAEYVWIDGHQKVRGKARHLNFIPEKPSDLPKW
NYDGSSTAQATGENSEVILVPQAIFSDPFRKKPNILVMCDTYTAQGEPHQ
TNSRFECKRIMEKASELEPWFGLEQEYFLQNPDTGRPIGFPTHGDPEPQG
PYYCGISGSKMHGRDISDAHFKACVYAGIKIAGTNAEVAPGQWEFQVGPA
VGIEEGDHLWMARYILQRIAELKGLDVNYDPKPIKGDWNGSGCHANFSTK
PMREDGGYEKYIIPAMAKLKAKHKQHIAAYGLGNEERLTGKHETASIDSF
DWGVANRGASIRVGRDTEQNGKGYFEDRRPAGNCDPYVVTKMLVETCCRE
H*

spliced messenger RNA

>Gchil2058.t1 ID=Gchil2058.t1|Name=Gchil2058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000019_pilon:360013..361068+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAATGCTCGTGTCTCTGCTCGATCTGCAAACCGACACGGGGTG
TATCGCAGAATACGTCTGGATCGATGGCCACCAAAAAGTGCGCGGAAAGG
CCAGACATTTGAATTTCATCCCCGAAAAACCCTCCGACCTCCCCAAATGG
AACTACGATGGAAGCAGCACAGCCCAAGCAACCGGCGAAAACTCCGAGGT
CATTCTCGTTCCACAAGCCATATTCTCAGATCCGTTCCGTAAGAAGCCCA
ATATCCTTGTCATGTGCGACACCTACACAGCCCAGGGAGAGCCCCACCAG
ACCAACAGCCGTTTTGAGTGCAAAAGGATCATGGAAAAGGCTAGCGAATT
GGAGCCCTGGTTCGGCTTGGAACAGGAGTATTTCCTACAAAATCCTGACA
CCGGACGCCCCATCGGTTTTCCTACTCATGGCGATCCGGAGCCACAGGGT
CCTTACTATTGTGGTATCTCGGGCTCTAAAATGCATGGCCGAGACATTTC
CGACGCCCACTTCAAGGCCTGTGTGTATGCCGGCATCAAGATTGCTGGAA
CCAACGCCGAGGTGGCGCCCGGCCAGTGGGAGTTCCAAGTGGGTCCGGCC
GTCGGCATCGAGGAAGGCGATCATTTGTGGATGGCTCGGTACATCTTGCA
GCGCATTGCCGAATTGAAGGGCCTGGATGTCAATTACGATCCTAAGCCTA
TCAAGGGCGACTGGAATGGGTCTGGATGTCATGCCAATTTTTCTACCAAG
CCCATGCGAGAAGATGGTGGCTATGAGAAGTACATCATACCTGCCATGGC
CAAATTGAAAGCCAAGCATAAGCAGCACATTGCCGCCTACGGTTTGGGCA
ATGAGGAAAGACTCACTGGAAAGCATGAGACCGCTTCCATAGACTCTTTT
GATTGGGGCGTGGCAAATCGGGGCGCGTCAATCCGTGTCGGAAGAGATAC
TGAACAGAATGGCAAAGGATACTTTGAAGATCGTCGCCCGGCTGGCAATT
GTGATCCTTATGTTGTCACCAAGATGCTTGTCGAGACTTGCTGTCGTGAA
CACTAG

protein sequence of Gchil2058.t1

>Gchil2058.t1 ID=Gchil2058.t1|Name=Gchil2058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MAEMLVSLLDLQTDTGCIAEYVWIDGHQKVRGKARHLNFIPEKPSDLPKW
NYDGSSTAQATGENSEVILVPQAIFSDPFRKKPNILVMCDTYTAQGEPHQ
TNSRFECKRIMEKASELEPWFGLEQEYFLQNPDTGRPIGFPTHGDPEPQG
PYYCGISGSKMHGRDISDAHFKACVYAGIKIAGTNAEVAPGQWEFQVGPA
VGIEEGDHLWMARYILQRIAELKGLDVNYDPKPIKGDWNGSGCHANFSTK
PMREDGGYEKYIIPAMAKLKAKHKQHIAAYGLGNEERLTGKHETASIDSF
DWGVANRGASIRVGRDTEQNGKGYFEDRRPAGNCDPYVVTKMLVETCCRE
H*

mRNA from alignment at tig00000019_pilon:360013..361068+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2058.t1 ID=Gchil2058.t1|Name=Gchil2058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000019_pilon:360013..361068+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAAATGCTCGTGTCTCTGCTCGATCTGCAAACCGACACGGGGTG
TATCGCAGAATACGTCTGGATCGATGGCCACCAAAAAGTGCGCGGAAAGG
CCAGACATTTGAATTTCATCCCCGAAAAACCCTCCGACCTCCCCAAATGG
AACTACGATGGAAGCAGCACAGCCCAAGCAACCGGCGAAAACTCCGAGGT
CATTCTCGTTCCACAAGCCATATTCTCAGATCCGTTCCGTAAGAAGCCCA
ATATCCTTGTCATGTGCGACACCTACACAGCCCAGGGAGAGCCCCACCAG
ACCAACAGCCGTTTTGAGTGCAAAAGGATCATGGAAAAGGCTAGCGAATT
GGAGCCCTGGTTCGGCTTGGAACAGGAGTATTTCCTACAAAATCCTGACA
CCGGACGCCCCATCGGTTTTCCTACTCATGGCGATCCGGAGCCACAGGGT
CCTTACTATTGTGGTATCTCGGGCTCTAAAATGCATGGCCGAGACATTTC
CGACGCCCACTTCAAGGCCTGTGTGTATGCCGGCATCAAGATTGCTGGAA
CCAACGCCGAGGTGGCGCCCGGCCAGTGGGAGTTCCAAGTGGGTCCGGCC
GTCGGCATCGAGGAAGGCGATCATTTGTGGATGGCTCGGTACATCTTGCA
GCGCATTGCCGAATTGAAGGGCCTGGATGTCAATTACGATCCTAAGCCTA
TCAAGGGCGACTGGAATGGGTCTGGATGTCATGCCAATTTTTCTACCAAG
CCCATGCGAGAAGATGGTGGCTATGAGAAGTACATCATACCTGCCATGGC
CAAATTGAAAGCCAAGCATAAGCAGCACATTGCCGCCTACGGTTTGGGCA
ATGAGGAAAGACTCACTGGAAAGCATGAGACCGCTTCCATAGACTCTTTT
GATTGGGGCGTGGCAAATCGGGGCGCGTCAATCCGTGTCGGAAGAGATAC
TGAACAGAATGGCAAAGGATACTTTGAAGATCGTCGCCCGGCTGGCAATT
GTGATCCTTATGTTGTCACCAAGATGCTTGTCGAGACTTGCTGTCGTGAA
CACTAG

Coding sequence (CDS) from alignment at tig00000019_pilon:360013..361068+

>Gchil2058.t1 ID=Gchil2058.t1|Name=Gchil2058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000019_pilon:360013..361068+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAAATGCTCGTGTCTCTGCTCGATCTGCAAACCGACACGGGGTG
TATCGCAGAATACGTCTGGATCGATGGCCACCAAAAAGTGCGCGGAAAGG
CCAGACATTTGAATTTCATCCCCGAAAAACCCTCCGACCTCCCCAAATGG
AACTACGATGGAAGCAGCACAGCCCAAGCAACCGGCGAAAACTCCGAGGT
CATTCTCGTTCCACAAGCCATATTCTCAGATCCGTTCCGTAAGAAGCCCA
ATATCCTTGTCATGTGCGACACCTACACAGCCCAGGGAGAGCCCCACCAG
ACCAACAGCCGTTTTGAGTGCAAAAGGATCATGGAAAAGGCTAGCGAATT
GGAGCCCTGGTTCGGCTTGGAACAGGAGTATTTCCTACAAAATCCTGACA
CCGGACGCCCCATCGGTTTTCCTACTCATGGCGATCCGGAGCCACAGGGT
CCTTACTATTGTGGTATCTCGGGCTCTAAAATGCATGGCCGAGACATTTC
CGACGCCCACTTCAAGGCCTGTGTGTATGCCGGCATCAAGATTGCTGGAA
CCAACGCCGAGGTGGCGCCCGGCCAGTGGGAGTTCCAAGTGGGTCCGGCC
GTCGGCATCGAGGAAGGCGATCATTTGTGGATGGCTCGGTACATCTTGCA
GCGCATTGCCGAATTGAAGGGCCTGGATGTCAATTACGATCCTAAGCCTA
TCAAGGGCGACTGGAATGGGTCTGGATGTCATGCCAATTTTTCTACCAAG
CCCATGCGAGAAGATGGTGGCTATGAGAAGTACATCATACCTGCCATGGC
CAAATTGAAAGCCAAGCATAAGCAGCACATTGCCGCCTACGGTTTGGGCA
ATGAGGAAAGACTCACTGGAAAGCATGAGACCGCTTCCATAGACTCTTTT
GATTGGGGCGTGGCAAATCGGGGCGCGTCAATCCGTGTCGGAAGAGATAC
TGAACAGAATGGCAAAGGATACTTTGAAGATCGTCGCCCGGCTGGCAATT
GTGATCCTTATGTTGTCACCAAGATGCTTGTCGAGACTTGCTGTCGTGAA
CACTAG