Gchil2054.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2054.t1
Unique NameGchil2054.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:319581..320453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704099.1
PFAMsHexapep,SATase_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041
KEGG koko:K00640
KEGG ReactionR00586
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01200,ko01230,ko05111,map00270,map00920,map01100,map01110,map01120,map01200,map01230,map05111
KEGG ModuleM00021
Evalue4.25e-99
EggNOG OGsCOG0110@1|root,KOG4750@2759|Eukaryota
EC2.3.1.30
Descriptionserine O-acetyltransferase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2054Gchil2054Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 319581..320453 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2054.t1.start1Gchil2054.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 319581..319583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2054.t1.CDS1Gchil2054.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 319581..320453 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2054.t1.exon1Gchil2054.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 319581..320453 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2054.t1.stop1Gchil2054.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 320451..320453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2054.t1Gchil2054.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 319581..320453 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2054.t1 ID=Gchil2054.t1|Name=Gchil2054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MQEEARQAAADEPLLASFLFATVLNHASLHQALAFHLANKLASPAMPSTI
LMRVFQDSMSSSVQFCESVRADLLAVMERDPACTRFIDALLYFKGFHALQ
AHRVAHILWGQGRMPLAYHLQSQVSKELQVDMHPAARIGSGVFVDHATGI
VIGETAVIGNNCSLLHHVTLGGTGKKHGERHPKLGEGVLVGAGATLLGNI
SVGDGVQIGACSLVLEDVPAHATVVGVPAKLVSRQGVGVGVPALDMMHER
CLPGCTDHTHGHGVSDSGNSASTADAAKGDEAVTGAMLRH*
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spliced messenger RNA

>Gchil2054.t1 ID=Gchil2054.t1|Name=Gchil2054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000019_pilon:319581..320453+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAGGAGGCGCGTCAGGCCGCCGCCGACGAGCCGCTGTTGGCCTC
TTTCCTGTTCGCCACCGTTTTGAACCACGCTTCTCTACACCAGGCACTAG
CCTTCCATCTGGCCAACAAGCTTGCGTCGCCGGCCATGCCGTCCACCATT
CTCATGCGCGTGTTCCAGGACAGCATGTCGTCCAGCGTGCAATTTTGCGA
GAGCGTGCGCGCCGACCTGTTGGCCGTCATGGAGAGAGACCCGGCATGCA
CCAGGTTCATCGACGCGCTGCTGTACTTTAAGGGATTCCACGCGCTGCAG
GCGCATCGCGTCGCGCACATACTGTGGGGTCAAGGCCGCATGCCGCTCGC
GTATCACCTGCAGAGCCAGGTGTCCAAGGAGCTGCAGGTGGACATGCACC
CGGCCGCGCGCATCGGAAGCGGCGTGTTCGTGGACCACGCCACCGGCATC
GTCATCGGCGAGACCGCCGTCATCGGAAACAACTGTTCGCTTCTACACCA
CGTCACGCTGGGCGGAACGGGCAAGAAACACGGCGAGCGCCACCCGAAAC
TTGGCGAAGGCGTGCTAGTGGGCGCCGGCGCCACGCTACTGGGCAACATT
AGCGTGGGCGATGGGGTGCAAATCGGCGCGTGCAGCCTGGTGCTGGAGGA
CGTGCCGGCGCACGCCACCGTGGTAGGCGTGCCTGCAAAGCTGGTGTCGC
GTCAAGGCGTGGGCGTGGGCGTACCCGCGTTGGACATGATGCACGAGCGC
TGTCTGCCGGGCTGCACTGACCACACGCATGGTCATGGTGTGAGTGATTC
GGGAAATTCGGCATCGACAGCAGACGCAGCTAAAGGCGATGAGGCGGTGA
CGGGCGCCATGCTGCGCCACTGA
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protein sequence of Gchil2054.t1

>Gchil2054.t1 ID=Gchil2054.t1|Name=Gchil2054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MQEEARQAAADEPLLASFLFATVLNHASLHQALAFHLANKLASPAMPSTI
LMRVFQDSMSSSVQFCESVRADLLAVMERDPACTRFIDALLYFKGFHALQ
AHRVAHILWGQGRMPLAYHLQSQVSKELQVDMHPAARIGSGVFVDHATGI
VIGETAVIGNNCSLLHHVTLGGTGKKHGERHPKLGEGVLVGAGATLLGNI
SVGDGVQIGACSLVLEDVPAHATVVGVPAKLVSRQGVGVGVPALDMMHER
CLPGCTDHTHGHGVSDSGNSASTADAAKGDEAVTGAMLRH*
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mRNA from alignment at tig00000019_pilon:319581..320453+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2054.t1 ID=Gchil2054.t1|Name=Gchil2054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000019_pilon:319581..320453+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGAGGAGGCGCGTCAGGCCGCCGCCGACGAGCCGCTGTTGGCCTC
TTTCCTGTTCGCCACCGTTTTGAACCACGCTTCTCTACACCAGGCACTAG
CCTTCCATCTGGCCAACAAGCTTGCGTCGCCGGCCATGCCGTCCACCATT
CTCATGCGCGTGTTCCAGGACAGCATGTCGTCCAGCGTGCAATTTTGCGA
GAGCGTGCGCGCCGACCTGTTGGCCGTCATGGAGAGAGACCCGGCATGCA
CCAGGTTCATCGACGCGCTGCTGTACTTTAAGGGATTCCACGCGCTGCAG
GCGCATCGCGTCGCGCACATACTGTGGGGTCAAGGCCGCATGCCGCTCGC
GTATCACCTGCAGAGCCAGGTGTCCAAGGAGCTGCAGGTGGACATGCACC
CGGCCGCGCGCATCGGAAGCGGCGTGTTCGTGGACCACGCCACCGGCATC
GTCATCGGCGAGACCGCCGTCATCGGAAACAACTGTTCGCTTCTACACCA
CGTCACGCTGGGCGGAACGGGCAAGAAACACGGCGAGCGCCACCCGAAAC
TTGGCGAAGGCGTGCTAGTGGGCGCCGGCGCCACGCTACTGGGCAACATT
AGCGTGGGCGATGGGGTGCAAATCGGCGCGTGCAGCCTGGTGCTGGAGGA
CGTGCCGGCGCACGCCACCGTGGTAGGCGTGCCTGCAAAGCTGGTGTCGC
GTCAAGGCGTGGGCGTGGGCGTACCCGCGTTGGACATGATGCACGAGCGC
TGTCTGCCGGGCTGCACTGACCACACGCATGGTCATGGTGTGAGTGATTC
GGGAAATTCGGCATCGACAGCAGACGCAGCTAAAGGCGATGAGGCGGTGA
CGGGCGCCATGCTGCGCCACTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:319581..320453+

>Gchil2054.t1 ID=Gchil2054.t1|Name=Gchil2054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000019_pilon:319581..320453+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGAGGAGGCGCGTCAGGCCGCCGCCGACGAGCCGCTGTTGGCCTC
TTTCCTGTTCGCCACCGTTTTGAACCACGCTTCTCTACACCAGGCACTAG
CCTTCCATCTGGCCAACAAGCTTGCGTCGCCGGCCATGCCGTCCACCATT
CTCATGCGCGTGTTCCAGGACAGCATGTCGTCCAGCGTGCAATTTTGCGA
GAGCGTGCGCGCCGACCTGTTGGCCGTCATGGAGAGAGACCCGGCATGCA
CCAGGTTCATCGACGCGCTGCTGTACTTTAAGGGATTCCACGCGCTGCAG
GCGCATCGCGTCGCGCACATACTGTGGGGTCAAGGCCGCATGCCGCTCGC
GTATCACCTGCAGAGCCAGGTGTCCAAGGAGCTGCAGGTGGACATGCACC
CGGCCGCGCGCATCGGAAGCGGCGTGTTCGTGGACCACGCCACCGGCATC
GTCATCGGCGAGACCGCCGTCATCGGAAACAACTGTTCGCTTCTACACCA
CGTCACGCTGGGCGGAACGGGCAAGAAACACGGCGAGCGCCACCCGAAAC
TTGGCGAAGGCGTGCTAGTGGGCGCCGGCGCCACGCTACTGGGCAACATT
AGCGTGGGCGATGGGGTGCAAATCGGCGCGTGCAGCCTGGTGCTGGAGGA
CGTGCCGGCGCACGCCACCGTGGTAGGCGTGCCTGCAAAGCTGGTGTCGC
GTCAAGGCGTGGGCGTGGGCGTACCCGCGTTGGACATGATGCACGAGCGC
TGTCTGCCGGGCTGCACTGACCACACGCATGGTCATGGTGTGAGTGATTC
GGGAAATTCGGCATCGACAGCAGACGCAGCTAAAGGCGATGAGGCGGTGA
CGGGCGCCATGCTGCGCCACTGA
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