Gchil2006.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2006.t1
Unique NameGchil2006.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1686904..1687690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps24560
PFAMsThioredoxin
Max annot lvl2836|Bacillariophyta
Evalue3.26e-21
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota,2XH62@2836|Bacillariophyta
DescriptionThioredoxin
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2006Gchil2006Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1686904..1687690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2006.t1Gchil2006.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1686904..1687690 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2006.t1.start1Gchil2006.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1686904..1686906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2006.t1.CDS1Gchil2006.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1686904..1687074 +
Gchil2006.t1.CDS2Gchil2006.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1687205..1687690 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2006.t1.exon1Gchil2006.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1686904..1687074 +
Gchil2006.t1.exon2Gchil2006.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1687205..1687690 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2006.t1.intron1Gchil2006.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1687075..1687204 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2006.t1.stop1Gchil2006.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1687688..1687690 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2006.t1 ID=Gchil2006.t1|Name=Gchil2006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MARYAYLTAIVLLLCVAVAAHEPAAAVLELSFLSLDHLIKSSSKPLLLQF
YSPTCGHCVRFEPAYERIARQLHMDANVARVDGVAHRALRLRFRVMAFPS
FFLIHAGSVFEFVGSRSVEELIKFTQSNGTTSGEKVTAINGPLNPYWQLV
HLLFRFVNFLQVEFKQYCRNGGNIPLLVFAVVTGVMCAFVVAIYLITLPP
KPYPSRNQWPVPTHAHHD*
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spliced messenger RNA

>Gchil2006.t1 ID=Gchil2006.t1|Name=Gchil2006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004439_pilon:1686904..1687690+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGGTACGCGTATCTGACTGCTATCGTGCTACTGCTCTGCGTcgc
cgtcgccgcgcacgagccggccgcggccgtgcTTGAGCTCTCGTTTTTGT
CGCTTGACCATCTCATAAAGAGCTCCTCCAAGCCGTTGCTGCTACAGTTC
TACTCGCCCACTTGCGGCCACTGCGTTCGGTTCGAGCCCGCCTACGAACG
CATTGCTCGCCAACTGCATATGGACGCCAACGTGGCGAGAGTGGACGGTG
TAGCTCATCGCGCCTTGCGCCTGCGCTTCCGCGTCATGGCCTTCCCGTCT
TTCTTTCTAATTCACGCTGGCTCTGTATTTGAGTTTGTAGGCTCTCGCTC
AGTCGAAGAGCTCATCAAGTTCACGCAGTCCAACGGCACCACTTCGGGAG
AGAAGGTCACTGCCATCAACGGGCCGCTCAATCCATATTGGCAACTTGTA
CATCTGCTGTTTCGCTTCGTCAATTTCCTGCAAGTCGAGTTCAAACAGTA
CTGCCGCAACGGTGGCAATATACCGCTGCTGGTTTTTGCAGTCGTCACTG
GTGTCATGTGCGCCTTTGTCGTCGCTATCTATCTTATCACCTTGCCACCC
AAACCGTATCCGTCGAGAAACCAATGGCCAGTTCCTACACACGCTCACCA
CGACTGA
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protein sequence of Gchil2006.t1

>Gchil2006.t1 ID=Gchil2006.t1|Name=Gchil2006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MARYAYLTAIVLLLCVAVAAHEPAAAVLELSFLSLDHLIKSSSKPLLLQF
YSPTCGHCVRFEPAYERIARQLHMDANVARVDGVAHRALRLRFRVMAFPS
FFLIHAGSVFEFVGSRSVEELIKFTQSNGTTSGEKVTAINGPLNPYWQLV
HLLFRFVNFLQVEFKQYCRNGGNIPLLVFAVVTGVMCAFVVAIYLITLPP
KPYPSRNQWPVPTHAHHD*
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mRNA from alignment at tig00004439_pilon:1686904..1687690+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2006.t1 ID=Gchil2006.t1|Name=Gchil2006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=787bp|location=Sequence derived from alignment at tig00004439_pilon:1686904..1687690+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAGGTACGCGTATCTGACTGCTATCGTGCTACTGCTCTGCGTcgc
cgtcgccgcgcacgagccggccgcggccgtgcTTGAGCTCTCGTTTTTGT
CGCTTGACCATCTCATAAAGAGCTCCTCCAAGCCGTTGCTGCTACAGTTC
TACTCGCCCACTTGCGGCCACGTAAGTTTCCTCAGTCCGCTCGCTCCCCC
ATAACCTCCCATAACCCATGCTGCTGCTGACGCACCTCCTCCCATGTCGT
CAATGCCGCGTTGTGCCCGCTGCTGCTGCCTTTGCCTCCTTCCCTCTATA
GTGCGTTCGGTTCGAGCCCGCCTACGAACGCATTGCTCGCCAACTGCATA
TGGACGCCAACGTGGCGAGAGTGGACGGTGTAGCTCATCGCGCCTTGCGC
CTGCGCTTCCGCGTCATGGCCTTCCCGTCTTTCTTTCTAATTCACGCTGG
CTCTGTATTTGAGTTTGTAGGCTCTCGCTCAGTCGAAGAGCTCATCAAGT
TCACGCAGTCCAACGGCACCACTTCGGGAGAGAAGGTCACTGCCATCAAC
GGGCCGCTCAATCCATATTGGCAACTTGTACATCTGCTGTTTCGCTTCGT
CAATTTCCTGCAAGTCGAGTTCAAACAGTACTGCCGCAACGGTGGCAATA
TACCGCTGCTGGTTTTTGCAGTCGTCACTGGTGTCATGTGCGCCTTTGTC
GTCGCTATCTATCTTATCACCTTGCCACCCAAACCGTATCCGTCGAGAAA
CCAATGGCCAGTTCCTACACACGCTCACCACGACTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1686904..1687690+

>Gchil2006.t1 ID=Gchil2006.t1|Name=Gchil2006.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00004439_pilon:1686904..1687690+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAGGTACGCGTATCTGACTGCTATCGTGCTACTGCTCTGCGTcgc
cgtcgccgcgcacgagccggccgcggccgtgcTTGAGCTCTCGTTTTTGT
CGCTTGACCATCTCATAAAGAGCTCCTCCAAGCCGTTGCTGCTACAGTTC
TACTCGCCCACTTGCGGCCACTGCGTTCGGTTCGAGCCCGCCTACGAACG
CATTGCTCGCCAACTGCATATGGACGCCAACGTGGCGAGAGTGGACGGTG
TAGCTCATCGCGCCTTGCGCCTGCGCTTCCGCGTCATGGCCTTCCCGTCT
TTCTTTCTAATTCACGCTGGCTCTGTATTTGAGTTTGTAGGCTCTCGCTC
AGTCGAAGAGCTCATCAAGTTCACGCAGTCCAACGGCACCACTTCGGGAG
AGAAGGTCACTGCCATCAACGGGCCGCTCAATCCATATTGGCAACTTGTA
CATCTGCTGTTTCGCTTCGTCAATTTCCTGCAAGTCGAGTTCAAACAGTA
CTGCCGCAACGGTGGCAATATACCGCTGCTGGTTTTTGCAGTCGTCACTG
GTGTCATGTGCGCCTTTGTCGTCGCTATCTATCTTATCACCTTGCCACCC
AAACCGTATCCGTCGAGAAACCAATGGCCAGTTCCTACACACGCTCACCA
CGACTGA
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