Gchil2004.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2004.t1
Unique NameGchil2004.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1677806..1679254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog204669.Acid345_3733
PFAMsMFS_1
Max annot lvl204432|Acidobacteriia
KEGG koko:K08177
KEGG TC2.A.1.11
Evalue2.82e-05
EggNOG OGsCOG2223@1|root,COG2223@2|Bacteria,3Y3PZ@57723|Acidobacteria,2JICB@204432|Acidobacteriia
DescriptionMajor Facilitator Superfamily
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2004Gchil2004Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1677806..1679254 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2004.t1.stop1Gchil2004.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1677806..1677808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2004.t1.CDS1Gchil2004.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1677806..1679254 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2004.t1.exon1Gchil2004.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1677806..1679254 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2004.t1.start1Gchil2004.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1679252..1679254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2004.t1Gchil2004.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1677806..1679254 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2004.t1 ID=Gchil2004.t1|Name=Gchil2004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MRLSNWRWFGPIPAAFVLQAVFGLQFANGVFASFLDDPVLTQALGLAALF
VSLGITAFGVLLYYASDHSKYHAVPRVVAVFGSFAVAAQLFVSYGLINHS
RFIVYVASILQGTGAGCIYVVSIVVVQDWVPESPALVTGLSLLFGGAGSL
FGIYAFQALVHTMGGAIPAMAVASLAAGLVSVTASMFIERPPDRWCPVAE
IFDPDTTMTLKDAHDARRVKPVDEQSACYSSIVDFGDDDLLHRKQKKCEA
VNRLSCYDIMIDPAFALVFVSVFVAAGPGYGFVLSYPLMLHSLFNLSLID
ANQMLCYATFFGVVGRLALGVAIDMLSSSSFSSSNGEQAPNIRGSKVTNI
FILLLQTGGLALMPVAIRTKCAWLFHVAVFAVFVAFNGGAVVAACLARDV
FAPENSTLAFALLGVAVGVARALFSIVLAACDGNSGVGAYDWYIGWSIVV
SVVGVAGSYLIEPAKCVNFDGANNRVFADMQV*
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spliced messenger RNA

>Gchil2004.t1 ID=Gchil2004.t1|Name=Gchil2004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004439_pilon:1677806..1679254- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCTTTCCAACTGGCGGTGGTTCGGACCTATCCCCGCTGCTTTCGT
GCTGCAGGCCGTCTTTGGTCTGCAATTTGCTAACGGCGTCTTCGCCTCCT
TTTTGGACGACCCTGTTCTCACACAGGCTCTTGGACTGGCCGCCCTCTTC
GTTTCGCTCGGCATCACCGCCTTCGGTGTACTTTTATACTACGCCTCCGA
CCACTCCAAGTACCACGCCGTGCCTAGAGTGGTGGCTGTGTTCGGCTCGT
TTGCAGTCGCCGCCCAACTGTTTGTCTCGTACGGACTCATCAATCACTCC
CGCTTCATCGTATATGTGGCCAGCATACTGCAGGGAACCGGCGCTGGTTG
CATCTATGTCGTCAGCATTGTCGTTGTGCAGGACTGGGTGCCCGAGTCGC
CCGCACTCGTCACCGGACTCAGCCTGCTGTTTGGTGGCGCCGGTTCTCTG
TTCGGTATCTACGCCTTTCAAGCACTGGTTCATACCATGGGCGGCGCCAT
CCCCGCCATGGCCGTCGCCAGTCTGGCCGCCGGTTTGGTTTCCGTCACTG
CCTCCATGTTCATCGAACGACCCCCTGACAGATGGTGCCCTGTCGCTGAA
ATTTTCGATCCCGATACTACCATGACTCTCAAGGATGCGCACGACGCTCG
ACGCGTCAAGCCCGTAGACGAACAATCCGCTTGCTATTCCTCTATTGTTG
ACTTTGGCGACGACGATTTGTTACACCGTAAACAAAAGAAGTGCGAGGCG
GTCAACAGGCTATCATGTTATGATATCATGATTGATCCTGCTTTTGCACT
TGTATTTGTGTCTGTGTTCGTTGCGGCGGGCCCTGGCTATGGTTTTGTTC
TTTCATACCCGCTTATGCTTCATTCCCTGTTTAACTTGTCTCTTATCGAT
GCCAACCAAATGCTGTGCTATGCCACCTTTTTCGGAGTGGTAGGACGGCT
GGCTTTGGGAGTGGCAATCGATATGCTATCATCCTCATCCTTCTCTTCTT
CCAACGGGGAACAAGCGCCAAACATTCGCGGCTCTAAAGTGACTAACATT
TTCATCTTGCTGTTGCAAACAGGAGGACTGGCACTCATGCCGGTGGCCAT
TCGCACCAAGTGCGCATGGTTGTTTCACGTGGCGGTGTTCGCCGTGTTCG
TGGCGTTTAACGGCGGTGCTGTGGTAGCGGCATGTCTGGCTCGCGATGTA
TTCGCGCCGGAAAACTCTACTCTGGCATTTGCTCTGCTCGGAGTGGCGGT
GGGCGTGGCGCGAGCGCTGTTTTCAATTGTGCTGGCGGCGTGCGACGGCA
ATAGCGGTGTTGGGGCGTACGACTGGTACATTGGGTGGTCAATTGTGGTG
TCCGTCGTGGGGGTAGCGGGGTCTTATTTGATTGAGCCAGCAAAGTGCGT
GAACTTCGACGGGGCAAACAACCGCGTCTTCGCGGACATGCAGGTTTAG
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protein sequence of Gchil2004.t1

>Gchil2004.t1 ID=Gchil2004.t1|Name=Gchil2004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MRLSNWRWFGPIPAAFVLQAVFGLQFANGVFASFLDDPVLTQALGLAALF
VSLGITAFGVLLYYASDHSKYHAVPRVVAVFGSFAVAAQLFVSYGLINHS
RFIVYVASILQGTGAGCIYVVSIVVVQDWVPESPALVTGLSLLFGGAGSL
FGIYAFQALVHTMGGAIPAMAVASLAAGLVSVTASMFIERPPDRWCPVAE
IFDPDTTMTLKDAHDARRVKPVDEQSACYSSIVDFGDDDLLHRKQKKCEA
VNRLSCYDIMIDPAFALVFVSVFVAAGPGYGFVLSYPLMLHSLFNLSLID
ANQMLCYATFFGVVGRLALGVAIDMLSSSSFSSSNGEQAPNIRGSKVTNI
FILLLQTGGLALMPVAIRTKCAWLFHVAVFAVFVAFNGGAVVAACLARDV
FAPENSTLAFALLGVAVGVARALFSIVLAACDGNSGVGAYDWYIGWSIVV
SVVGVAGSYLIEPAKCVNFDGANNRVFADMQV*
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mRNA from alignment at tig00004439_pilon:1677806..1679254-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2004.t1 ID=Gchil2004.t1|Name=Gchil2004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00004439_pilon:1677806..1679254- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCTTTCCAACTGGCGGTGGTTCGGACCTATCCCCGCTGCTTTCGT
GCTGCAGGCCGTCTTTGGTCTGCAATTTGCTAACGGCGTCTTCGCCTCCT
TTTTGGACGACCCTGTTCTCACACAGGCTCTTGGACTGGCCGCCCTCTTC
GTTTCGCTCGGCATCACCGCCTTCGGTGTACTTTTATACTACGCCTCCGA
CCACTCCAAGTACCACGCCGTGCCTAGAGTGGTGGCTGTGTTCGGCTCGT
TTGCAGTCGCCGCCCAACTGTTTGTCTCGTACGGACTCATCAATCACTCC
CGCTTCATCGTATATGTGGCCAGCATACTGCAGGGAACCGGCGCTGGTTG
CATCTATGTCGTCAGCATTGTCGTTGTGCAGGACTGGGTGCCCGAGTCGC
CCGCACTCGTCACCGGACTCAGCCTGCTGTTTGGTGGCGCCGGTTCTCTG
TTCGGTATCTACGCCTTTCAAGCACTGGTTCATACCATGGGCGGCGCCAT
CCCCGCCATGGCCGTCGCCAGTCTGGCCGCCGGTTTGGTTTCCGTCACTG
CCTCCATGTTCATCGAACGACCCCCTGACAGATGGTGCCCTGTCGCTGAA
ATTTTCGATCCCGATACTACCATGACTCTCAAGGATGCGCACGACGCTCG
ACGCGTCAAGCCCGTAGACGAACAATCCGCTTGCTATTCCTCTATTGTTG
ACTTTGGCGACGACGATTTGTTACACCGTAAACAAAAGAAGTGCGAGGCG
GTCAACAGGCTATCATGTTATGATATCATGATTGATCCTGCTTTTGCACT
TGTATTTGTGTCTGTGTTCGTTGCGGCGGGCCCTGGCTATGGTTTTGTTC
TTTCATACCCGCTTATGCTTCATTCCCTGTTTAACTTGTCTCTTATCGAT
GCCAACCAAATGCTGTGCTATGCCACCTTTTTCGGAGTGGTAGGACGGCT
GGCTTTGGGAGTGGCAATCGATATGCTATCATCCTCATCCTTCTCTTCTT
CCAACGGGGAACAAGCGCCAAACATTCGCGGCTCTAAAGTGACTAACATT
TTCATCTTGCTGTTGCAAACAGGAGGACTGGCACTCATGCCGGTGGCCAT
TCGCACCAAGTGCGCATGGTTGTTTCACGTGGCGGTGTTCGCCGTGTTCG
TGGCGTTTAACGGCGGTGCTGTGGTAGCGGCATGTCTGGCTCGCGATGTA
TTCGCGCCGGAAAACTCTACTCTGGCATTTGCTCTGCTCGGAGTGGCGGT
GGGCGTGGCGCGAGCGCTGTTTTCAATTGTGCTGGCGGCGTGCGACGGCA
ATAGCGGTGTTGGGGCGTACGACTGGTACATTGGGTGGTCAATTGTGGTG
TCCGTCGTGGGGGTAGCGGGGTCTTATTTGATTGAGCCAGCAAAGTGCGT
GAACTTCGACGGGGCAAACAACCGCGTCTTCGCGGACATGCAGGTTTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1677806..1679254-

>Gchil2004.t1 ID=Gchil2004.t1|Name=Gchil2004.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00004439_pilon:1677806..1679254- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCTTTCCAACTGGCGGTGGTTCGGACCTATCCCCGCTGCTTTCGT
GCTGCAGGCCGTCTTTGGTCTGCAATTTGCTAACGGCGTCTTCGCCTCCT
TTTTGGACGACCCTGTTCTCACACAGGCTCTTGGACTGGCCGCCCTCTTC
GTTTCGCTCGGCATCACCGCCTTCGGTGTACTTTTATACTACGCCTCCGA
CCACTCCAAGTACCACGCCGTGCCTAGAGTGGTGGCTGTGTTCGGCTCGT
TTGCAGTCGCCGCCCAACTGTTTGTCTCGTACGGACTCATCAATCACTCC
CGCTTCATCGTATATGTGGCCAGCATACTGCAGGGAACCGGCGCTGGTTG
CATCTATGTCGTCAGCATTGTCGTTGTGCAGGACTGGGTGCCCGAGTCGC
CCGCACTCGTCACCGGACTCAGCCTGCTGTTTGGTGGCGCCGGTTCTCTG
TTCGGTATCTACGCCTTTCAAGCACTGGTTCATACCATGGGCGGCGCCAT
CCCCGCCATGGCCGTCGCCAGTCTGGCCGCCGGTTTGGTTTCCGTCACTG
CCTCCATGTTCATCGAACGACCCCCTGACAGATGGTGCCCTGTCGCTGAA
ATTTTCGATCCCGATACTACCATGACTCTCAAGGATGCGCACGACGCTCG
ACGCGTCAAGCCCGTAGACGAACAATCCGCTTGCTATTCCTCTATTGTTG
ACTTTGGCGACGACGATTTGTTACACCGTAAACAAAAGAAGTGCGAGGCG
GTCAACAGGCTATCATGTTATGATATCATGATTGATCCTGCTTTTGCACT
TGTATTTGTGTCTGTGTTCGTTGCGGCGGGCCCTGGCTATGGTTTTGTTC
TTTCATACCCGCTTATGCTTCATTCCCTGTTTAACTTGTCTCTTATCGAT
GCCAACCAAATGCTGTGCTATGCCACCTTTTTCGGAGTGGTAGGACGGCT
GGCTTTGGGAGTGGCAATCGATATGCTATCATCCTCATCCTTCTCTTCTT
CCAACGGGGAACAAGCGCCAAACATTCGCGGCTCTAAAGTGACTAACATT
TTCATCTTGCTGTTGCAAACAGGAGGACTGGCACTCATGCCGGTGGCCAT
TCGCACCAAGTGCGCATGGTTGTTTCACGTGGCGGTGTTCGCCGTGTTCG
TGGCGTTTAACGGCGGTGCTGTGGTAGCGGCATGTCTGGCTCGCGATGTA
TTCGCGCCGGAAAACTCTACTCTGGCATTTGCTCTGCTCGGAGTGGCGGT
GGGCGTGGCGCGAGCGCTGTTTTCAATTGTGCTGGCGGCGTGCGACGGCA
ATAGCGGTGTTGGGGCGTACGACTGGTACATTGGGTGGTCAATTGTGGTG
TCCGTCGTGGGGGTAGCGGGGTCTTATTTGATTGAGCCAGCAAAGTGCGT
GAACTTCGACGGGGCAAACAACCGCGTCTTCGCGGACATGCAGGTTTAG
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