Gchil1996.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1996.t1
Unique NameGchil1996.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1588266..1589387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706368.1
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
Evalue7.56e-114
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1996Gchil1996Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1588266..1589387 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1996.t1.stop1Gchil1996.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1588266..1588268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1996.t1.CDS1Gchil1996.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1588266..1589387 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1996.t1.exon1Gchil1996.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1588266..1589387 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1996.t1.start1Gchil1996.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1589385..1589387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1996.t1Gchil1996.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1588266..1589387 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1996.t1 ID=Gchil1996.t1|Name=Gchil1996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp
MVDLSAAVSDFASAKSALKVDTSVDDSNAVNIGIIGCGRIGQCHARSICT
SIPNAKLVCVSDVFESAALKLAKNYQVPMACTDPLDLINNPAVQAVIVCS
PTDTHADIIKAAVAAEKHIFCEKPVDKNLETIAELEQLLSKSKAKFFLGF
QRRFDKHFKHAKSVAEAGAIGKPIKLHLTSRDPAPPPVGYLKQSGGLFLD
MSSHDFDMARYLTASNIVSISAVGIADNSEIAAIGDLDHTLVTATFENGC
IVTIDNSRASALGYDQRAEFFGTKGSVSVGNVHPNTCDSTDKDGYHSESP
LNFFMERYADAYVEEMKAFVDVVVNDLPVPCGIEDGRLTVLYAAMANLSI
KEKRAVNICEFDKSAAADVAARY*
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spliced messenger RNA

>Gchil1996.t1 ID=Gchil1996.t1|Name=Gchil1996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004439_pilon:1588266..1589387- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGATCTCTCCGCCGCAGTTTCTGACTTTGCCTCAGCTAAGTCCGC
TTTGAAGGTCGATACTTCTGTCGATGATTCCAACGCTGTCAACATTGGCA
TCATTGGATGCGGCCGCATTGGACAATGCCATGCGCGTAGTATCTGCACT
AGCATACCGAACGCCAAGCTCGTCTGCGTCTCCGATGTCTTTGAATCCGC
CGCCCTCAAGCTGGCCAAAAACTACCAGGTGCCGATGGCATGCACTGACC
CGCTGGATCTCATTAACAACCCCGCTGTTCAAGCTGTCATCGTGTGCTCG
CCTACCGATACTCATGCCGACATCATCAAGGCCGCTGTTGCCGCTGAGAA
GCACATCTTCTGCGAAAAACCTGTTGACAAGAATCTGGAAACTATTGCCG
AACTAGAGCAGCTTCTTTCCAAGTCTAAAGCCAAGTTTTTCCTTGGCTTC
CAACGACGATTCGACAAGCATTTCAAGCACGCGAAAAGCGTCGCCGAAGC
GGGAGCCATTGGAAAGCCCATCAAGCTGCATCTCACTTCCAGGGATCCGG
CCCCGCCACCCGTTGGATATCTCAAGCAGTCCGGCGGACTCTTTCTCGAT
ATGTCCAGTCACGACTTTGACATGGCCAGGTATTTGACAGCCTCCAATAT
TGTGTCTATTTCGGCTGTTGGAATCGCCGATAATTCTGAGATTGCCGCCA
TTGGTGATTTGGATCATACGCTTGTTACCGCTACTTTTGAGAATGGATGT
ATTGTCACCATTGACAATTCTCGTGCCTCTGCGCTTGGATATGATCAGCG
TGCCGAGTTCTTTGGGACCAAGGGTAGTGTAAGCGTTGGAAACGTTCATC
CGAACACGTGTGATTCTACGGATAAAGATGGATACCATTCTGAGAGTCCG
CTCAACTTCTTTATGGAAAGGTATGCTGACGCGTACGTTGAGGAGATGAA
GGCCTTTGTCGATGTTGTTGTCAACGACCTGCCAGTTCCGTGTGGCATCG
AGGACGGAAGGTTGACTGTTCTGTATGCAGCCATGGCCAACTTGAGTATC
AAGGAAAAGCGAGCTGTCAATATCTGTGAATTTGATAAGTCAGCTGCGGC
TGATGTAGCGGCTCGCTATTAG
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protein sequence of Gchil1996.t1

>Gchil1996.t1 ID=Gchil1996.t1|Name=Gchil1996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=374bp
MVDLSAAVSDFASAKSALKVDTSVDDSNAVNIGIIGCGRIGQCHARSICT
SIPNAKLVCVSDVFESAALKLAKNYQVPMACTDPLDLINNPAVQAVIVCS
PTDTHADIIKAAVAAEKHIFCEKPVDKNLETIAELEQLLSKSKAKFFLGF
QRRFDKHFKHAKSVAEAGAIGKPIKLHLTSRDPAPPPVGYLKQSGGLFLD
MSSHDFDMARYLTASNIVSISAVGIADNSEIAAIGDLDHTLVTATFENGC
IVTIDNSRASALGYDQRAEFFGTKGSVSVGNVHPNTCDSTDKDGYHSESP
LNFFMERYADAYVEEMKAFVDVVVNDLPVPCGIEDGRLTVLYAAMANLSI
KEKRAVNICEFDKSAAADVAARY*
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mRNA from alignment at tig00004439_pilon:1588266..1589387-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1996.t1 ID=Gchil1996.t1|Name=Gchil1996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004439_pilon:1588266..1589387- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGATCTCTCCGCCGCAGTTTCTGACTTTGCCTCAGCTAAGTCCGC
TTTGAAGGTCGATACTTCTGTCGATGATTCCAACGCTGTCAACATTGGCA
TCATTGGATGCGGCCGCATTGGACAATGCCATGCGCGTAGTATCTGCACT
AGCATACCGAACGCCAAGCTCGTCTGCGTCTCCGATGTCTTTGAATCCGC
CGCCCTCAAGCTGGCCAAAAACTACCAGGTGCCGATGGCATGCACTGACC
CGCTGGATCTCATTAACAACCCCGCTGTTCAAGCTGTCATCGTGTGCTCG
CCTACCGATACTCATGCCGACATCATCAAGGCCGCTGTTGCCGCTGAGAA
GCACATCTTCTGCGAAAAACCTGTTGACAAGAATCTGGAAACTATTGCCG
AACTAGAGCAGCTTCTTTCCAAGTCTAAAGCCAAGTTTTTCCTTGGCTTC
CAACGACGATTCGACAAGCATTTCAAGCACGCGAAAAGCGTCGCCGAAGC
GGGAGCCATTGGAAAGCCCATCAAGCTGCATCTCACTTCCAGGGATCCGG
CCCCGCCACCCGTTGGATATCTCAAGCAGTCCGGCGGACTCTTTCTCGAT
ATGTCCAGTCACGACTTTGACATGGCCAGGTATTTGACAGCCTCCAATAT
TGTGTCTATTTCGGCTGTTGGAATCGCCGATAATTCTGAGATTGCCGCCA
TTGGTGATTTGGATCATACGCTTGTTACCGCTACTTTTGAGAATGGATGT
ATTGTCACCATTGACAATTCTCGTGCCTCTGCGCTTGGATATGATCAGCG
TGCCGAGTTCTTTGGGACCAAGGGTAGTGTAAGCGTTGGAAACGTTCATC
CGAACACGTGTGATTCTACGGATAAAGATGGATACCATTCTGAGAGTCCG
CTCAACTTCTTTATGGAAAGGTATGCTGACGCGTACGTTGAGGAGATGAA
GGCCTTTGTCGATGTTGTTGTCAACGACCTGCCAGTTCCGTGTGGCATCG
AGGACGGAAGGTTGACTGTTCTGTATGCAGCCATGGCCAACTTGAGTATC
AAGGAAAAGCGAGCTGTCAATATCTGTGAATTTGATAAGTCAGCTGCGGC
TGATGTAGCGGCTCGCTATTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1588266..1589387-

>Gchil1996.t1 ID=Gchil1996.t1|Name=Gchil1996.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00004439_pilon:1588266..1589387- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGATCTCTCCGCCGCAGTTTCTGACTTTGCCTCAGCTAAGTCCGC
TTTGAAGGTCGATACTTCTGTCGATGATTCCAACGCTGTCAACATTGGCA
TCATTGGATGCGGCCGCATTGGACAATGCCATGCGCGTAGTATCTGCACT
AGCATACCGAACGCCAAGCTCGTCTGCGTCTCCGATGTCTTTGAATCCGC
CGCCCTCAAGCTGGCCAAAAACTACCAGGTGCCGATGGCATGCACTGACC
CGCTGGATCTCATTAACAACCCCGCTGTTCAAGCTGTCATCGTGTGCTCG
CCTACCGATACTCATGCCGACATCATCAAGGCCGCTGTTGCCGCTGAGAA
GCACATCTTCTGCGAAAAACCTGTTGACAAGAATCTGGAAACTATTGCCG
AACTAGAGCAGCTTCTTTCCAAGTCTAAAGCCAAGTTTTTCCTTGGCTTC
CAACGACGATTCGACAAGCATTTCAAGCACGCGAAAAGCGTCGCCGAAGC
GGGAGCCATTGGAAAGCCCATCAAGCTGCATCTCACTTCCAGGGATCCGG
CCCCGCCACCCGTTGGATATCTCAAGCAGTCCGGCGGACTCTTTCTCGAT
ATGTCCAGTCACGACTTTGACATGGCCAGGTATTTGACAGCCTCCAATAT
TGTGTCTATTTCGGCTGTTGGAATCGCCGATAATTCTGAGATTGCCGCCA
TTGGTGATTTGGATCATACGCTTGTTACCGCTACTTTTGAGAATGGATGT
ATTGTCACCATTGACAATTCTCGTGCCTCTGCGCTTGGATATGATCAGCG
TGCCGAGTTCTTTGGGACCAAGGGTAGTGTAAGCGTTGGAAACGTTCATC
CGAACACGTGTGATTCTACGGATAAAGATGGATACCATTCTGAGAGTCCG
CTCAACTTCTTTATGGAAAGGTATGCTGACGCGTACGTTGAGGAGATGAA
GGCCTTTGTCGATGTTGTTGTCAACGACCTGCCAGTTCCGTGTGGCATCG
AGGACGGAAGGTTGACTGTTCTGTATGCAGCCATGGCCAACTTGAGTATC
AAGGAAAAGCGAGCTGTCAATATCTGTGAATTTGATAAGTCAGCTGCGGC
TGATGTAGCGGCTCGCTATTAG
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