Gchil1992.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1992.t1
Unique NameGchil1992.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1579921..1581411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1992Gchil1992Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1579921..1581411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1992.t1Gchil1992.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1579921..1581411 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1992.t1.start1Gchil1992.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1579921..1579923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1992.t1.CDS1Gchil1992.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1579921..1580682 +
Gchil1992.t1.CDS2Gchil1992.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1580747..1581255 +
Gchil1992.t1.CDS3Gchil1992.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1581339..1581411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1992.t1.exon1Gchil1992.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1579921..1580682 +
Gchil1992.t1.exon2Gchil1992.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1580747..1581255 +
Gchil1992.t1.exon3Gchil1992.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1581339..1581411 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1992.t1.intron1Gchil1992.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1580683..1580746 +
Gchil1992.t1.intron2Gchil1992.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1581256..1581338 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1992.t1.stop1Gchil1992.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1581409..1581411 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1992.t1 ID=Gchil1992.t1|Name=Gchil1992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MMPSNLRSRAVKLSADKHHQPSLNFQNPRMKLSEDSYNALLVSIAAFILL
LFGFYSLSLFSANHEIVGLHPPLSLHREIGDHFHKFSTRPDWHDGHYDSP
LEEQWQHDQYDQHHDLYRDYYKQHPQIDGETYNAAHDEDKIRYEDYKNDD
YYHHEQHAHQPPRPHQLNGHVVEDRATDDHPDTRHEHDHYHAHDHNKKVP
PPHSHDEYGYAENQGHYHYHDEHEHEHYDHHYEHDDQHEPHNHYEHGYYA
EEHSANAMQTNTMQTNTTQTNTTQTNTTQTNTTQTNTTPANTTQANTTQA
NTTQANTTQAITTQAITTQANTAQVISTTRSLTTPILIQAIVNRRSITLE
NVFLTTLVKQSIQTIINPYTKTHTIIIVVAHILALNMKHKESIKFILLQM
TFENSHHLLSGPNASSYECVQASRNGDFLLNFFLRVSLIVYWFTESK*
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spliced messenger RNA

>Gchil1992.t1 ID=Gchil1992.t1|Name=Gchil1992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004439_pilon:1579921..1581411+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCCTCTAATCTGCGAAGTCGCGCTGTCAAGCTTTCCGCCGACAA
GCACCATCAACCCTCCCTTAACTTTCAGAACCCCCGCATGAAACTTTCGG
AAGACTCGTACAACGCGCTTCTTGTATCTATCGCCGCCTTCATTCTGCTC
TTGTTTGGCTTCTATTCCCTCTCCTTGTTCTCCGCTAACCATGAGATAGT
CGGCTTGCACCCTCCTTTATCGTTGCACAGAGAAATTGGAGACCATTTTC
ACAAGTTTTCAACTCGCCCTGATTGGCATGATGGTCACTATGATTCTCCG
CTGGAAGAACAGTGGCAACATGATCAATACGATCAACATCACGACCTCTA
TCGCGACTATTATAAGCAACACCCGCAGATTGACGGAGAGACCTACAACG
CCGCTCACGACGAGGATAAAATTCGCTACGAGGACTATAAGAATGACGAC
TACTATCACCATGAACAGCACGCACACCAGCCACCTAGACCTCACCAACT
GAATGGACATGTCGTTGAAGACCGAGCTACAGACGATCATCCCGACACCC
GCcacgaacatgatcattatcacgcccatgatcaCAACAAGAAAGTCCCT
CCGCCTCATAGTCATGACGAATATGGCTACGCTGAGAATCAGGGGCATTA
TCACTACCACGatgagcatgagcacgagcattatgaccatcactatgagc
atgaTGACCAACATGAACCGCACAATCACTATGAGCACGGCTACTACGCC
GAGGAGCACAGTGCGAACGCCATGCAAACGAACACCATGCAAACGAACAC
CACGCAAACGAACACCACGCAAACGAACACCACGCAAACGAACACCACGC
AAACGAACACCACGCCGGCGAACACCACGCAGGCGAACACCACGCAGGCG
AACACCACGCAGGCGAACACCACGCAGGCGATCACCACGCAGGCGATCAC
CACGCAGGCGAACACCGCGCAGGTGATCAGTACAACTCGGAGCCTAACCA
CTCCTATTCTCATTCAGGCAATAGTCAACCGAAGGAGCATCACGCTGGAG
AACGTCTTCCTCACAACTCTGGTGAAACAGAGCATTCAGACCATCATAAA
TCCTTACACAAAGACACATACAATCATCATAGTAGTGGCTCACATATTGG
CTCTGAACATGAAGCACAAAGAGAGCATCAAGTTCATTTTGCTCCAGATG
ACTTTTGAGAACTCTCATCATTTACTAAGCGGCCCAAACGCATCTTCTTA
CGAGTGTGTGCAAGCCAGCAGAAATGGGGATTTCCTGTTGAATTTCTTCT
TGCGTGTTTCTCTGATCGTGTACTGGTTTACAGAGTCAAAATGA
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protein sequence of Gchil1992.t1

>Gchil1992.t1 ID=Gchil1992.t1|Name=Gchil1992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MMPSNLRSRAVKLSADKHHQPSLNFQNPRMKLSEDSYNALLVSIAAFILL
LFGFYSLSLFSANHEIVGLHPPLSLHREIGDHFHKFSTRPDWHDGHYDSP
LEEQWQHDQYDQHHDLYRDYYKQHPQIDGETYNAAHDEDKIRYEDYKNDD
YYHHEQHAHQPPRPHQLNGHVVEDRATDDHPDTRHEHDHYHAHDHNKKVP
PPHSHDEYGYAENQGHYHYHDEHEHEHYDHHYEHDDQHEPHNHYEHGYYA
EEHSANAMQTNTMQTNTTQTNTTQTNTTQTNTTQTNTTPANTTQANTTQA
NTTQANTTQAITTQAITTQANTAQVISTTRSLTTPILIQAIVNRRSITLE
NVFLTTLVKQSIQTIINPYTKTHTIIIVVAHILALNMKHKESIKFILLQM
TFENSHHLLSGPNASSYECVQASRNGDFLLNFFLRVSLIVYWFTESK*
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mRNA from alignment at tig00004439_pilon:1579921..1581411+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1992.t1 ID=Gchil1992.t1|Name=Gchil1992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00004439_pilon:1579921..1581411+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCCTCTAATCTGCGAAGTCGCGCTGTCAAGCTTTCCGCCGACAA
GCACCATCAACCCTCCCTTAACTTTCAGAACCCCCGCATGAAACTTTCGG
AAGACTCGTACAACGCGCTTCTTGTATCTATCGCCGCCTTCATTCTGCTC
TTGTTTGGCTTCTATTCCCTCTCCTTGTTCTCCGCTAACCATGAGATAGT
CGGCTTGCACCCTCCTTTATCGTTGCACAGAGAAATTGGAGACCATTTTC
ACAAGTTTTCAACTCGCCCTGATTGGCATGATGGTCACTATGATTCTCCG
CTGGAAGAACAGTGGCAACATGATCAATACGATCAACATCACGACCTCTA
TCGCGACTATTATAAGCAACACCCGCAGATTGACGGAGAGACCTACAACG
CCGCTCACGACGAGGATAAAATTCGCTACGAGGACTATAAGAATGACGAC
TACTATCACCATGAACAGCACGCACACCAGCCACCTAGACCTCACCAACT
GAATGGACATGTCGTTGAAGACCGAGCTACAGACGATCATCCCGACACCC
GCcacgaacatgatcattatcacgcccatgatcaCAACAAGAAAGTCCCT
CCGCCTCATAGTCATGACGAATATGGCTACGCTGAGAATCAGGGGCATTA
TCACTACCACGatgagcatgagcacgagcattatgaccatcactatgagc
atgaTGACCAACATGAACCGCACAATCACTATGAGCACGGCTACTACGCC
GAGGAGCACAGTGTGAACGATCAACAAGAGCGTGAGCACCATGCAGGCGA
ACACCATGCAGGCGAACACCATGCAGGCGAACGCCATGCAAACGAACACC
ATGCAAACGAACACCACGCAAACGAACACCACGCAAACGAACACCACGCA
AACGAACACCACGCAAACGAACACCACGCCGGCGAACACCACGCAGGCGA
ACACCACGCAGGCGAACACCACGCAGGCGAACACCACGCAGGCGATCACC
ACGCAGGCGATCACCACGCAGGCGAACACCGCGCAGGTGATCAGTACAAC
TCGGAGCCTAACCACTCCTATTCTCATTCAGGCAATAGTCAACCGAAGGA
GCATCACGCTGGAGAACGTCTTCCTCACAACTCTGGTGAAACAGAGCATT
CAGACCATCATAAATCCTTACACAAAGACACATACAATCATCATAGTAGT
GGCTCACATATTGGCTCTGAACATGAAGCACAAAGAGAGCATCAAGTTCA
TTTTGCTCCAGATGACTTTTGAGAACTCTCATCATTTACTAAGCGGCCCA
AACGCATCTTCTTACGAGTGTGTGCAAGCCAGCAGGTAATTGTCATGCAG
ACGACTTTTTACGACGGACATATATCCCCTCACTGTTTACTAATGGAAAA
GCTGACGGAATTATTTAGAAATGGGGATTTCCTGTTGAATTTCTTCTTGC
GTGTTTCTCTGATCGTGTACTGGTTTACAGAGTCAAAATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1579921..1581411+

>Gchil1992.t1 ID=Gchil1992.t1|Name=Gchil1992.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00004439_pilon:1579921..1581411+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCCTCTAATCTGCGAAGTCGCGCTGTCAAGCTTTCCGCCGACAA
GCACCATCAACCCTCCCTTAACTTTCAGAACCCCCGCATGAAACTTTCGG
AAGACTCGTACAACGCGCTTCTTGTATCTATCGCCGCCTTCATTCTGCTC
TTGTTTGGCTTCTATTCCCTCTCCTTGTTCTCCGCTAACCATGAGATAGT
CGGCTTGCACCCTCCTTTATCGTTGCACAGAGAAATTGGAGACCATTTTC
ACAAGTTTTCAACTCGCCCTGATTGGCATGATGGTCACTATGATTCTCCG
CTGGAAGAACAGTGGCAACATGATCAATACGATCAACATCACGACCTCTA
TCGCGACTATTATAAGCAACACCCGCAGATTGACGGAGAGACCTACAACG
CCGCTCACGACGAGGATAAAATTCGCTACGAGGACTATAAGAATGACGAC
TACTATCACCATGAACAGCACGCACACCAGCCACCTAGACCTCACCAACT
GAATGGACATGTCGTTGAAGACCGAGCTACAGACGATCATCCCGACACCC
GCcacgaacatgatcattatcacgcccatgatcaCAACAAGAAAGTCCCT
CCGCCTCATAGTCATGACGAATATGGCTACGCTGAGAATCAGGGGCATTA
TCACTACCACGatgagcatgagcacgagcattatgaccatcactatgagc
atgaTGACCAACATGAACCGCACAATCACTATGAGCACGGCTACTACGCC
GAGGAGCACAGTGCGAACGCCATGCAAACGAACACCATGCAAACGAACAC
CACGCAAACGAACACCACGCAAACGAACACCACGCAAACGAACACCACGC
AAACGAACACCACGCCGGCGAACACCACGCAGGCGAACACCACGCAGGCG
AACACCACGCAGGCGAACACCACGCAGGCGATCACCACGCAGGCGATCAC
CACGCAGGCGAACACCGCGCAGGTGATCAGTACAACTCGGAGCCTAACCA
CTCCTATTCTCATTCAGGCAATAGTCAACCGAAGGAGCATCACGCTGGAG
AACGTCTTCCTCACAACTCTGGTGAAACAGAGCATTCAGACCATCATAAA
TCCTTACACAAAGACACATACAATCATCATAGTAGTGGCTCACATATTGG
CTCTGAACATGAAGCACAAAGAGAGCATCAAGTTCATTTTGCTCCAGATG
ACTTTTGAGAACTCTCATCATTTACTAAGCGGCCCAAACGCATCTTCTTA
CGAGTGTGTGCAAGCCAGCAGAAATGGGGATTTCCTGTTGAATTTCTTCT
TGCGTGTTTCTCTGATCGTGTACTGGTTTACAGAGTCAAAATGA
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