Gchil1987.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1987.t1
Unique NameGchil1987.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1569051..1571111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7460.GB54335-PA
PFAMsAlba,Rpp20
Max annot lvl33208|Metazoa
KEGG koko:K14527
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000172,GO:0000966,GO:0001682,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030677,GO:0030678,GO:0030681,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098798,GO:0099116,GO:1901360,GO:1902494,GO:1902555,GO:1905348,GO:1990904
Evalue5.71e-06
EggNOG OGsKOG3631@1|root,KOG3631@2759|Eukaryota,3A5MY@33154|Opisthokonta,3BV57@33208|Metazoa,3DBHC@33213|Bilateria,4211D@6656|Arthropoda,3SPMM@50557|Insecta,46MN3@7399|Hymenoptera
EC3.1.26.5
DescriptionComponent of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP complex, which cleaves pre-rRNA sequences
COG categoryL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1987Gchil1987Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1569051..1571111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1987.t1Gchil1987.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1569051..1571111 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1987.t1.start1Gchil1987.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1569051..1569053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1987.t1.CDS1Gchil1987.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1569051..1569383 +
Gchil1987.t1.CDS2Gchil1987.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1570127..1570306 +
Gchil1987.t1.CDS3Gchil1987.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1570390..1570463 +
Gchil1987.t1.CDS4Gchil1987.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1570616..1571111 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1987.t1.exon1Gchil1987.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1569051..1569383 +
Gchil1987.t1.exon2Gchil1987.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1570127..1570306 +
Gchil1987.t1.exon3Gchil1987.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1570390..1570463 +
Gchil1987.t1.exon4Gchil1987.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1570616..1571111 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1987.t1.intron1Gchil1987.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1569384..1570126 +
Gchil1987.t1.intron2Gchil1987.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1570307..1570389 +
Gchil1987.t1.intron3Gchil1987.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1570464..1570615 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1987.t1.stop1Gchil1987.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1571109..1571111 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1987.t1 ID=Gchil1987.t1|Name=Gchil1987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=361bp
MDPNKSAPEYGAEQSPYAGMPSYIPHDPKARPNVYPRPAVDPEKIAIIPA
ANKPAQQPLDYSKYFRGESVQQQRRIRDNMAAQASASAAAAAAAASTAAA
ASAAAAASAANRVTSLLQAHPAPVVLHAMGAAITKCCHLALAVQRNNANA
VSIELTTSTQVVYDDYHPLTEGSEETTVSRNVSALHITLRRTKHFVSIAS
PHHNAAPEMSTWTPAAAPKLMYHSWVPPVDVDVPPDLRSVAALEAALQQR
RDQAKNLRVPNPMGLCIAAPAAAAAVSADDQLRDRASHVPNDDRMEDVDS
DAMSASDFDNMSHASLAEDPAVGADAHAHAQQHHSQLHADGDDDEEEDDD
DDDDDLARFL*
back to top

spliced messenger RNA

>Gchil1987.t1 ID=Gchil1987.t1|Name=Gchil1987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004439_pilon:1569051..1571111+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
aTGGACCCCAACAAATCCGCGCCCGAGTACGGCGCAGAGCAGTCGCCGTA
CGCCGGCATGCCGTCATACATTCCCCACGACCCCAAGGCGCGACCCAACG
TGTATCCGCGTCCCGCCGTGGACCCAGAGAAAATTGCCATCATTCCCGCC
GCCAACAAGCCAGCGCAGCAGCCGCTTGACTACAGCAAGTACTTTCGTGG
TGAAAGCGTGCAGCAGCAGCGTCGTATCCGCGACAATATGGCCGCGCAGG
CCTctgcctcggccgccgccgccgccgccgctgcctcgaccgccgccgct
gcctcggccgccgctgctgcctcggccgctaatCGCGTTACCAGCCTGCT
GCAAGCGCACCCCGCCCCCGTCGTGCTGCACGCCATGGGCGCGGCCATCA
CAAAGTGCTGCCACCTTGCGCTGGCCGTCCAGCGCAACAATGCCAACGCC
GTTTCCATCGAGCTCACCACCAGCACCCAGGTCGTCTACGATGACTATCA
CCCTCTCACAGAGGGGAGCGAGGAGACAACTGTTTCGCGCAATGTCTCCG
CTCTGCACATCACGCTGCGCCGCACTAAGCACTTTGTCTCTATTGCTTCT
CCCCACCATAACGCCGCGCCCGAAATGAGCACGTGGACGCCTGCCGCTGC
CCCAAAGCTCATGTATCACAGCTGGGTCCCGCCCGTCGACGTCGACGTCC
CACCCGACCTCCGCTCCGTCGCCGCCCTGGAGGCCGCGCTGCAGCAGCGC
CGCGACCAAGCGAAGAACCTGCGCGTCCCAAATCCCATGGGCTTGTGCAT
TGCTGCACCAGCCGCCGCCGCCGCCGTCTCTGCAGATGATCAGCTGCGCG
ATCGCGCCTCTCACGTGCCGAATGATGACCGCATGGAGGACGTTGATAGC
GACGCCATGTCGGCCAGCGACTTTGACAATATGAGCCACGCTTCTCTGGC
CGAAGACCCCGCCGTGGGCGCAGACGCGCACGCACACGCCCAACAGCACC
ACTCACAGCTGCACGCCgatggcgacgatgatgaagaagaagatgatgat
gatgatgatgacgaCCTGGCGCGCTTCTTGTAA
back to top

protein sequence of Gchil1987.t1

>Gchil1987.t1 ID=Gchil1987.t1|Name=Gchil1987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=361bp
MDPNKSAPEYGAEQSPYAGMPSYIPHDPKARPNVYPRPAVDPEKIAIIPA
ANKPAQQPLDYSKYFRGESVQQQRRIRDNMAAQASASAAAAAAAASTAAA
ASAAAAASAANRVTSLLQAHPAPVVLHAMGAAITKCCHLALAVQRNNANA
VSIELTTSTQVVYDDYHPLTEGSEETTVSRNVSALHITLRRTKHFVSIAS
PHHNAAPEMSTWTPAAAPKLMYHSWVPPVDVDVPPDLRSVAALEAALQQR
RDQAKNLRVPNPMGLCIAAPAAAAAVSADDQLRDRASHVPNDDRMEDVDS
DAMSASDFDNMSHASLAEDPAVGADAHAHAQQHHSQLHADGDDDEEEDDD
DDDDDLARFL*
back to top

mRNA from alignment at tig00004439_pilon:1569051..1571111+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1987.t1 ID=Gchil1987.t1|Name=Gchil1987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2061bp|location=Sequence derived from alignment at tig00004439_pilon:1569051..1571111+ (Gracilaria chilensis NLEC103_M9 male)
aTGGACCCCAACAAATCCGCGCCCGAGTACGGCGCAGAGCAGTCGCCGTA
CGCCGGCATGCCGTCATACATTCCCCACGACCCCAAGGCGCGACCCAACG
TGTATCCGCGTCCCGCCGTGGACCCAGAGAAAATTGCCATCATTCCCGCC
GCCAACAAGCCAGCGCAGCAGCCGCTTGACTACAGCAAGTACTTTCGTGG
TGAAAGCGTGCAGCAGCAGCGTCGTATCCGCGACAATATGGCCGCGCAGG
CCTctgcctcggccgccgccgccgccgccgctgcctcgaccgccgccgct
gcctcggccgccgctgctgcctcggccgctaatgtagcagcctctactgc
gttgcccgcGCCCGCGGCGCCGCAGCCGCGTTTACCGTACGCGACCAAGG
GCGTCGACGCGGCCAGAGGCGGCGGCGACGACGCAACGCGAAGCAGCTCT
CGGGGCTCGACGGTGCCCAGACACACGGGCCGCCAGCCGGTGTGGTCTCC
CGCCGCGAGAAACCCTCACCTTGCCAGGCCCAAACCGAAACGCGGCGGCA
GCAGCAGCGCCTCCTAACCGTTATTCTTTTTCTTTTTTTTTACTTTCTTT
GGCCGCTTTTTTGAGTTGTTGCAAACTGTGATTGTTCCTTTACTCGACTT
GCCATAGGCACGTCTTGTGTGTGAGAGAGATAGATTGCTACCTTCGTAAA
TCGATTAGCATCTTGAGTGTGTGTTTGTTTGTCATACGCCGCCACCGCCG
TAGCAGCGCGCGCGCCCGTCATGTCGCAGAAGCGAAAGCGAGCGCACGGC
AAGGTCGACGGccatttgccaccgtcgccgtcgtcgccgtcgtcgccacg
acagtcgcccgccgccggccccgacccgtcgctgtgtaagtaacgcgccc
cttccaccgccgccaGTCGCACACAGGGCAGCACCAACTGACGCGCGTCT
GTCcgcgcgcgcgcgcgcgcacgcCCCACAACAGACCGCATCATACGTCG
CGCGCCGAGCGCGCCACCGGCGTCAGCCAGATGCATTCACGTCTCGCGTG
CCACCAACATTCTGCCGCTCACCAAGCGCGTTACCAGCCTGCTGCAAGCG
CACCCCGCCCCCGTCGTGCTGCACGCCATGGGCGCGGCCATCACAAAGTG
CTGCCACCTTGCGCTGGCCGTCCAGCGCAACAATGCCAACGCCGTTTCCA
TCGAGCTCACCACCAGCACCCAGGTCGTCTACGATGACTATCACCCTCTC
ACAGAGGTATGTTCAGCATAATTCCACCATAAACTCCGCCCCCTTCCTTA
TTAGATACTCACCACCCCCGCCGTCTTGCGTCTGCCAAGGGGAGCGAGGA
GACAACTGTTTCGCGCAATGTCTCCGCTCTGCACATCACGCTGCGCCGCA
CTAAGCACTTTGTGTAACTGTCTCTGCTACACAGCAACATGACAAGCAAC
ATGACAAGCAACATAAACGTACCCACTCGCACACGTGGCCGCAATCACTG
CAATACCGCCGTTGCGTCGTCCATTGTTCATGTTTGACGCTATCGTGCCC
GAAACTCCCCACAAGCTCTATTGCTTCTCCCCACCATAACGCCGCGCCCG
AAATGAGCACGTGGACGCCTGCCGCTGCCCCAAAGCTCATGTATCACAGC
TGGGTCCCGCCCGTCGACGTCGACGTCCCACCCGACCTCCGCTCCGTCGC
CGCCCTGGAGGCCGCGCTGCAGCAGCGCCGCGACCAAGCGAAGAACCTGC
GCGTCCCAAATCCCATGGGCTTGTGCATTGCTGCACCAGCCGCCGCCGCC
GCCGTCTCTGCAGATGATCAGCTGCGCGATCGCGCCTCTCACGTGCCGAA
TGATGACCGCATGGAGGACGTTGATAGCGACGCCATGTCGGCCAGCGACT
TTGACAATATGAGCCACGCTTCTCTGGCCGAAGACCCCGCCGTGGGCGCA
GACGCGCACGCACACGCCCAACAGCACCACTCACAGCTGCACGCCgatgg
cgacgatgatgaagaagaagatgatgatgatgatgatgacgaCCTGGCGC
GCTTCTTGTAA
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1569051..1571111+

>Gchil1987.t1 ID=Gchil1987.t1|Name=Gchil1987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00004439_pilon:1569051..1571111+ (Gracilaria chilensis NLEC103_M9 male)
aTGGACCCCAACAAATCCGCGCCCGAGTACGGCGCAGAGCAGTCGCCGTA
CGCCGGCATGCCGTCATACATTCCCCACGACCCCAAGGCGCGACCCAACG
TGTATCCGCGTCCCGCCGTGGACCCAGAGAAAATTGCCATCATTCCCGCC
GCCAACAAGCCAGCGCAGCAGCCGCTTGACTACAGCAAGTACTTTCGTGG
TGAAAGCGTGCAGCAGCAGCGTCGTATCCGCGACAATATGGCCGCGCAGG
CCTctgcctcggccgccgccgccgccgccgctgcctcgaccgccgccgct
gcctcggccgccgctgctgcctcggccgctaatCGCGTTACCAGCCTGCT
GCAAGCGCACCCCGCCCCCGTCGTGCTGCACGCCATGGGCGCGGCCATCA
CAAAGTGCTGCCACCTTGCGCTGGCCGTCCAGCGCAACAATGCCAACGCC
GTTTCCATCGAGCTCACCACCAGCACCCAGGTCGTCTACGATGACTATCA
CCCTCTCACAGAGGGGAGCGAGGAGACAACTGTTTCGCGCAATGTCTCCG
CTCTGCACATCACGCTGCGCCGCACTAAGCACTTTGTCTCTATTGCTTCT
CCCCACCATAACGCCGCGCCCGAAATGAGCACGTGGACGCCTGCCGCTGC
CCCAAAGCTCATGTATCACAGCTGGGTCCCGCCCGTCGACGTCGACGTCC
CACCCGACCTCCGCTCCGTCGCCGCCCTGGAGGCCGCGCTGCAGCAGCGC
CGCGACCAAGCGAAGAACCTGCGCGTCCCAAATCCCATGGGCTTGTGCAT
TGCTGCACCAGCCGCCGCCGCCGCCGTCTCTGCAGATGATCAGCTGCGCG
ATCGCGCCTCTCACGTGCCGAATGATGACCGCATGGAGGACGTTGATAGC
GACGCCATGTCGGCCAGCGACTTTGACAATATGAGCCACGCTTCTCTGGC
CGAAGACCCCGCCGTGGGCGCAGACGCGCACGCACACGCCCAACAGCACC
ACTCACAGCTGCACGCCgatggcgacgatgatgaagaagaagatgatgat
gatgatgatgacgaCCTGGCGCGCTTCTTGTAA
back to top