Gchil1984.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1984.t1
Unique NameGchil1984.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1564519..1565298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173026.Glo7428_1581
Preferred namecpcT
PFAMsCpeT
Max annot lvl1117|Cyanobacteria
KEGG koko:K05383
KEGG Pathwayko00196,ko01100,map00196,map01100
GOsGO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0017006,GO:0017007,GO:0017009,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
Evalue7.48e-48
EggNOG OGs2CCNY@1|root,2Z877@2|Bacteria,1G0J1@1117|Cyanobacteria
DescriptionCovalently attaches a chromophore to Cys residue(s) of phycobiliproteins
COG categoryE
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1984Gchil1984Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1564519..1565298 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1984.t1.start1Gchil1984.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1564519..1564521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1984.t1.CDS1Gchil1984.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1564519..1565298 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1984.t1.exon1Gchil1984.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1564519..1565298 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1984.t1.stop1Gchil1984.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1565296..1565298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1984.t1Gchil1984.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1564519..1565298 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1984.t1 ID=Gchil1984.t1|Name=Gchil1984.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=260bp
MIASQPAFTSVPLPRGARARARAPLRRRPYCATTPPLSGTPGTGINARRL
AKWLAADWSNKSQAMDNPQFWAHIHVCFRPLPWQFLHGYSLYCESAYDFN
LGAPYKTSVVRIENDGKGQLELASYKIKQAEEFWMGAYEPQLLQSLTSDL
LMRLPDACNTLYEWDEQKGVYMASSRPGKGCRIRRGGTERETYLDSQIML
SEDCYAAWDVGRDPQSDERVWGTPAGPFVFYVVSRLDHLVPDEQSALVVG
PEASPRGGK*
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spliced messenger RNA

>Gchil1984.t1 ID=Gchil1984.t1|Name=Gchil1984.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00004439_pilon:1564519..1565298+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCGTCACAGCCAGCTTTCACCAGCGTGccgcttccccgcggcgc
ccgcgcccgcgcccgcgccccgctgcggcgccggcCGTACTGCGCGACCA
CGCCGCCGCTGTCCGGCACGCCGGGCACCGGCATCAACGCGCGTCGTCTG
GCCAAGTGGCTTGCCGCCGACTGGTCCAACAAGTCGCAGGCGATGGATAA
CCCCCAATTCTGGGCGCACATTCACGTGTGCTTCCGCCCTTTGCCATGGC
AGTTTTTGCACGGCTACAGTCTGTATTGCGAGTCGGCGTATGACTTTAAT
CTTGGCGCGCCGTACAAGACGTCTGTGGTACGCATCGAGAACGATGGCAA
AGGACAGCTTGAGTTGGCGTCGTACAAAATCAAGCAGGCGGAGGAATTTT
GGATGGGCGCTTACGAGCCGCAGTTGCTGCAGTCGCTCACTAGTGATTTG
CTCATGCGACTGCCTGATGCTTGTAATACGCTGTATGAGTGGGATGAGCA
AAAAGGCGTGTACATGGCCAGTTCGAGACCGGGAAAGGGCTGTAGAATAC
GGCGCGGAGGTACCGAAAGGGAGACATACTTGGATTCGCAGATCATGTTG
AGCGAGGACTGCTACGCTGCATGGGATGTCGGACGTGATCCGCAAAGCGA
TGAGAGAGTTTGGGGAACGCCGGCCGGCCCTTTTGTATTTTACGTAGTAT
CTAGATTGGATCATCTTGTACCCGATGAACAAAGCGCGCTTGTGGTAGGT
CCCGAAGCCTCCCCACGCGGTGGCAAATGA
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protein sequence of Gchil1984.t1

>Gchil1984.t1 ID=Gchil1984.t1|Name=Gchil1984.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=260bp
MIASQPAFTSVPLPRGARARARAPLRRRPYCATTPPLSGTPGTGINARRL
AKWLAADWSNKSQAMDNPQFWAHIHVCFRPLPWQFLHGYSLYCESAYDFN
LGAPYKTSVVRIENDGKGQLELASYKIKQAEEFWMGAYEPQLLQSLTSDL
LMRLPDACNTLYEWDEQKGVYMASSRPGKGCRIRRGGTERETYLDSQIML
SEDCYAAWDVGRDPQSDERVWGTPAGPFVFYVVSRLDHLVPDEQSALVVG
PEASPRGGK*
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mRNA from alignment at tig00004439_pilon:1564519..1565298+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1984.t1 ID=Gchil1984.t1|Name=Gchil1984.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00004439_pilon:1564519..1565298+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCGTCACAGCCAGCTTTCACCAGCGTGccgcttccccgcggcgc
ccgcgcccgcgcccgcgccccgctgcggcgccggcCGTACTGCGCGACCA
CGCCGCCGCTGTCCGGCACGCCGGGCACCGGCATCAACGCGCGTCGTCTG
GCCAAGTGGCTTGCCGCCGACTGGTCCAACAAGTCGCAGGCGATGGATAA
CCCCCAATTCTGGGCGCACATTCACGTGTGCTTCCGCCCTTTGCCATGGC
AGTTTTTGCACGGCTACAGTCTGTATTGCGAGTCGGCGTATGACTTTAAT
CTTGGCGCGCCGTACAAGACGTCTGTGGTACGCATCGAGAACGATGGCAA
AGGACAGCTTGAGTTGGCGTCGTACAAAATCAAGCAGGCGGAGGAATTTT
GGATGGGCGCTTACGAGCCGCAGTTGCTGCAGTCGCTCACTAGTGATTTG
CTCATGCGACTGCCTGATGCTTGTAATACGCTGTATGAGTGGGATGAGCA
AAAAGGCGTGTACATGGCCAGTTCGAGACCGGGAAAGGGCTGTAGAATAC
GGCGCGGAGGTACCGAAAGGGAGACATACTTGGATTCGCAGATCATGTTG
AGCGAGGACTGCTACGCTGCATGGGATGTCGGACGTGATCCGCAAAGCGA
TGAGAGAGTTTGGGGAACGCCGGCCGGCCCTTTTGTATTTTACGTAGTAT
CTAGATTGGATCATCTTGTACCCGATGAACAAAGCGCGCTTGTGGTAGGT
CCCGAAGCCTCCCCACGCGGTGGCAAATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1564519..1565298+

>Gchil1984.t1 ID=Gchil1984.t1|Name=Gchil1984.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00004439_pilon:1564519..1565298+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCGTCACAGCCAGCTTTCACCAGCGTGccgcttccccgcggcgc
ccgcgcccgcgcccgcgccccgctgcggcgccggcCGTACTGCGCGACCA
CGCCGCCGCTGTCCGGCACGCCGGGCACCGGCATCAACGCGCGTCGTCTG
GCCAAGTGGCTTGCCGCCGACTGGTCCAACAAGTCGCAGGCGATGGATAA
CCCCCAATTCTGGGCGCACATTCACGTGTGCTTCCGCCCTTTGCCATGGC
AGTTTTTGCACGGCTACAGTCTGTATTGCGAGTCGGCGTATGACTTTAAT
CTTGGCGCGCCGTACAAGACGTCTGTGGTACGCATCGAGAACGATGGCAA
AGGACAGCTTGAGTTGGCGTCGTACAAAATCAAGCAGGCGGAGGAATTTT
GGATGGGCGCTTACGAGCCGCAGTTGCTGCAGTCGCTCACTAGTGATTTG
CTCATGCGACTGCCTGATGCTTGTAATACGCTGTATGAGTGGGATGAGCA
AAAAGGCGTGTACATGGCCAGTTCGAGACCGGGAAAGGGCTGTAGAATAC
GGCGCGGAGGTACCGAAAGGGAGACATACTTGGATTCGCAGATCATGTTG
AGCGAGGACTGCTACGCTGCATGGGATGTCGGACGTGATCCGCAAAGCGA
TGAGAGAGTTTGGGGAACGCCGGCCGGCCCTTTTGTATTTTACGTAGTAT
CTAGATTGGATCATCTTGTACCCGATGAACAAAGCGCGCTTGTGGTAGGT
CCCGAAGCCTCCCCACGCGGTGGCAAATGA
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