Gchil1938.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1938.t1
Unique Name	Gchil1938.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	422

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1240641..1241906 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704002.1
Preferred name	EIF5
PFAMs	W2,eIF-5_eIF-2B
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03262,ko:K10683
KEGG Pathway	ko03013,ko03440,ko04214,map03013,map03440,map04214
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	7.14e-66
EggNOG OGs	COG1601@1\|root,KOG2767@2759\|Eukaryota
Description	translation initiation factor activity
COG category	J
BRITE	ko00000,ko00001,ko03012,ko03019,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1938	Gchil1938	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1240641..1241906 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1938.t1.stop1	Gchil1938.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1240641..1240643 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1938.t1.CDS1	Gchil1938.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1240641..1241906 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1938.t1.exon1	Gchil1938.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1240641..1241906 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1938.t1.start1	Gchil1938.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1241904..1241906 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1938.t1	Gchil1938.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1240641..1241906 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1240641..1241906-
coding sequence from alignment at tig00004439_pilon:1240641..1241906-

mRNA sequence

>Gchil1938.t1 ID=Gchil1938.t1|Name=Gchil1938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=422bp
MDSINIGGGDDQFNRYKMPPVMGKVEGRGNGIKTRIVNCVEVARALHRPP
GYVCKFFGCELCAQTKINDAEGVYIVNGSFSQSVLADTLQKFIKMFVLCQ
SCTLPETDLKIKKNGLITQLCNACGAEAVCDMTHKLCTYIVNNPPDGRKK
KVGGKKDKAARRAAKARRAAGEAVEHDDERSKKKAAKKAAKRAAHAGAAD
AHDAEIVFPGGDFDGGGDEDREEEGDDDVQWSVDTSKKAQEARQRELGAA
ASILERAPVEDEWNKVRKLRAYIDDGKRASKVITKAEKMFGGDGAIQAIV
KAAVVDEALSAMVESVRERAVEVLKEIGTPMRVEAQQAFLEYFNWAAVHD
SRVVAMMAHLLKLSYDEELVEEETIVGWFKSGELREEVKKVVGDVVHWLE
NAEEEDEDEEDSEEESGEESE*

spliced messenger RNA

>Gchil1938.t1 ID=Gchil1938.t1|Name=Gchil1938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00004439_pilon:1240641..1241906- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGTATCAACATTGGAGGAGGCGATGACCAGTTCAACCGCTACAA
GATGCCCCCGGTCATGGGTAAGGTGGAAGGCCGTGGCAACGGCATCAAGA
CGCGCATCGTCAACTGCGTCGAGGTGGCGCGTGCCTTGCACCGTCCACCC
GGCTATGTGTGCAAGTTCTTTGGCTGCGAGCTGTGCGCCCAGACAAAAAT
CAACGACGCCGAGGGCGTGTACATTGTGAACGGCTCGTTCAGTCAGTCGG
TGCTGGCGGACACGCTTCAAAAGTTTATCAAGATGTTTGTGCTGTGTCAG
AGCTGCACGCTTCCGGAGACGGACCTCAAAATCAAGAAGAACGGGCTCAT
CACGCAGCTGTGCAACGCGTGTGGCGCGGAGGCCGTGTGCGACATGACGC
ACAAATTGTGTACGTACATTGTGAATAACCCGCCGGACGGCAGGAAGAAA
AAAGTGGGCGGCAAGAAGGACAAGGCTGCGCGGCGCGCCGCCAAGGCGCG
CCGTGCGGCCGGAGAGGCCGTGGAGCACGACGATGAGCGCAGTAAGAAAA
AGGCGGCCAAGAAGGCGGCCAAAAGGGCGGCGCACGCTGGGGCGGCCGAC
GCGCACGACGCGGAGATTGTGTTCCCGGGCGGCGACTTTGACGGCGGTGG
CGACGAGGACAGGGAAGAGGAGGGGGACGACGACGTGCAGTGGAGCGTCG
ACACGTCCAAGAAGGCGCAGGAGGCGCGTCAGAGGGAATTGGGCGCGGCA
GCGTCCATCCTGGAGAGGGCGCCCGTGGAAGATGAGTGGAACAAGGTGCG
CAAACTGCGTGCGTACATTGACGACGGCAAGCGCGCCAGCAAAGTGATTA
CCAAGGCGGAGAAGATGTTTGGGGGCGACGGCGCGATTCAGGCTATTGTG
AAGGCGGCGGTGGTGGATGAGGCGCTGTCGGCGATGGTGGAAAGCGTGCG
TGAGCGCGCGGTGGAGGTACTCAAGGAGATTGGAACGCCGATGCGCGTGG
AGGCGCAGCAGGCGTTTTTGGAGTACTTTAATTGGGCGGCGGTGCATGAC
AGTCGCGTGGTGGCGATGATGGCGCACTTGCTTAAGCTGAGCTACGATGA
GGAGCTGGTGGAGGAGGAGACGATTGTGGGGTGGTTCAAGTCGGGCGAGC
TGAGGGAGGAGGTGAAGAAGGTGGTGGGAGACGTGGTGCACTGGCTGGAG
AACGCGGAGGAGGAGGACGAGGACGAGGAAGATAGTGAGGAAGAGAGTGG
TGAGGAGAGCGAGTGA

protein sequence of Gchil1938.t1

>Gchil1938.t1 ID=Gchil1938.t1|Name=Gchil1938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=422bp
MDSINIGGGDDQFNRYKMPPVMGKVEGRGNGIKTRIVNCVEVARALHRPP
GYVCKFFGCELCAQTKINDAEGVYIVNGSFSQSVLADTLQKFIKMFVLCQ
SCTLPETDLKIKKNGLITQLCNACGAEAVCDMTHKLCTYIVNNPPDGRKK
KVGGKKDKAARRAAKARRAAGEAVEHDDERSKKKAAKKAAKRAAHAGAAD
AHDAEIVFPGGDFDGGGDEDREEEGDDDVQWSVDTSKKAQEARQRELGAA
ASILERAPVEDEWNKVRKLRAYIDDGKRASKVITKAEKMFGGDGAIQAIV
KAAVVDEALSAMVESVRERAVEVLKEIGTPMRVEAQQAFLEYFNWAAVHD
SRVVAMMAHLLKLSYDEELVEEETIVGWFKSGELREEVKKVVGDVVHWLE
NAEEEDEDEEDSEEESGEESE*

mRNA from alignment at tig00004439_pilon:1240641..1241906-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1938.t1 ID=Gchil1938.t1|Name=Gchil1938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00004439_pilon:1240641..1241906- (Gracilaria chilensis NLEC103_M9 male)
ATGGATAGTATCAACATTGGAGGAGGCGATGACCAGTTCAACCGCTACAA
GATGCCCCCGGTCATGGGTAAGGTGGAAGGCCGTGGCAACGGCATCAAGA
CGCGCATCGTCAACTGCGTCGAGGTGGCGCGTGCCTTGCACCGTCCACCC
GGCTATGTGTGCAAGTTCTTTGGCTGCGAGCTGTGCGCCCAGACAAAAAT
CAACGACGCCGAGGGCGTGTACATTGTGAACGGCTCGTTCAGTCAGTCGG
TGCTGGCGGACACGCTTCAAAAGTTTATCAAGATGTTTGTGCTGTGTCAG
AGCTGCACGCTTCCGGAGACGGACCTCAAAATCAAGAAGAACGGGCTCAT
CACGCAGCTGTGCAACGCGTGTGGCGCGGAGGCCGTGTGCGACATGACGC
ACAAATTGTGTACGTACATTGTGAATAACCCGCCGGACGGCAGGAAGAAA
AAAGTGGGCGGCAAGAAGGACAAGGCTGCGCGGCGCGCCGCCAAGGCGCG
CCGTGCGGCCGGAGAGGCCGTGGAGCACGACGATGAGCGCAGTAAGAAAA
AGGCGGCCAAGAAGGCGGCCAAAAGGGCGGCGCACGCTGGGGCGGCCGAC
GCGCACGACGCGGAGATTGTGTTCCCGGGCGGCGACTTTGACGGCGGTGG
CGACGAGGACAGGGAAGAGGAGGGGGACGACGACGTGCAGTGGAGCGTCG
ACACGTCCAAGAAGGCGCAGGAGGCGCGTCAGAGGGAATTGGGCGCGGCA
GCGTCCATCCTGGAGAGGGCGCCCGTGGAAGATGAGTGGAACAAGGTGCG
CAAACTGCGTGCGTACATTGACGACGGCAAGCGCGCCAGCAAAGTGATTA
CCAAGGCGGAGAAGATGTTTGGGGGCGACGGCGCGATTCAGGCTATTGTG
AAGGCGGCGGTGGTGGATGAGGCGCTGTCGGCGATGGTGGAAAGCGTGCG
TGAGCGCGCGGTGGAGGTACTCAAGGAGATTGGAACGCCGATGCGCGTGG
AGGCGCAGCAGGCGTTTTTGGAGTACTTTAATTGGGCGGCGGTGCATGAC
AGTCGCGTGGTGGCGATGATGGCGCACTTGCTTAAGCTGAGCTACGATGA
GGAGCTGGTGGAGGAGGAGACGATTGTGGGGTGGTTCAAGTCGGGCGAGC
TGAGGGAGGAGGTGAAGAAGGTGGTGGGAGACGTGGTGCACTGGCTGGAG
AACGCGGAGGAGGAGGACGAGGACGAGGAAGATAGTGAGGAAGAGAGTGG
TGAGGAGAGCGAGTGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1240641..1241906-

>Gchil1938.t1 ID=Gchil1938.t1|Name=Gchil1938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00004439_pilon:1240641..1241906- (Gracilaria chilensis NLEC103_M9 male)
ATGGATAGTATCAACATTGGAGGAGGCGATGACCAGTTCAACCGCTACAA
GATGCCCCCGGTCATGGGTAAGGTGGAAGGCCGTGGCAACGGCATCAAGA
CGCGCATCGTCAACTGCGTCGAGGTGGCGCGTGCCTTGCACCGTCCACCC
GGCTATGTGTGCAAGTTCTTTGGCTGCGAGCTGTGCGCCCAGACAAAAAT
CAACGACGCCGAGGGCGTGTACATTGTGAACGGCTCGTTCAGTCAGTCGG
TGCTGGCGGACACGCTTCAAAAGTTTATCAAGATGTTTGTGCTGTGTCAG
AGCTGCACGCTTCCGGAGACGGACCTCAAAATCAAGAAGAACGGGCTCAT
CACGCAGCTGTGCAACGCGTGTGGCGCGGAGGCCGTGTGCGACATGACGC
ACAAATTGTGTACGTACATTGTGAATAACCCGCCGGACGGCAGGAAGAAA
AAAGTGGGCGGCAAGAAGGACAAGGCTGCGCGGCGCGCCGCCAAGGCGCG
CCGTGCGGCCGGAGAGGCCGTGGAGCACGACGATGAGCGCAGTAAGAAAA
AGGCGGCCAAGAAGGCGGCCAAAAGGGCGGCGCACGCTGGGGCGGCCGAC
GCGCACGACGCGGAGATTGTGTTCCCGGGCGGCGACTTTGACGGCGGTGG
CGACGAGGACAGGGAAGAGGAGGGGGACGACGACGTGCAGTGGAGCGTCG
ACACGTCCAAGAAGGCGCAGGAGGCGCGTCAGAGGGAATTGGGCGCGGCA
GCGTCCATCCTGGAGAGGGCGCCCGTGGAAGATGAGTGGAACAAGGTGCG
CAAACTGCGTGCGTACATTGACGACGGCAAGCGCGCCAGCAAAGTGATTA
CCAAGGCGGAGAAGATGTTTGGGGGCGACGGCGCGATTCAGGCTATTGTG
AAGGCGGCGGTGGTGGATGAGGCGCTGTCGGCGATGGTGGAAAGCGTGCG
TGAGCGCGCGGTGGAGGTACTCAAGGAGATTGGAACGCCGATGCGCGTGG
AGGCGCAGCAGGCGTTTTTGGAGTACTTTAATTGGGCGGCGGTGCATGAC
AGTCGCGTGGTGGCGATGATGGCGCACTTGCTTAAGCTGAGCTACGATGA
GGAGCTGGTGGAGGAGGAGACGATTGTGGGGTGGTTCAAGTCGGGCGAGC
TGAGGGAGGAGGTGAAGAAGGTGGTGGGAGACGTGGTGCACTGGCTGGAG
AACGCGGAGGAGGAGGACGAGGACGAGGAAGATAGTGAGGAAGAGAGTGG
TGAGGAGAGCGAGTGA