Gchil1906.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1906.t2
Unique NameGchil1906.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1091157..1092557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1906Gchil1906Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1091157..1092557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1906.t2.start1Gchil1906.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1091157..1091159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1906.t2.CDS1Gchil1906.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1091157..1092557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1906.t2.exon1Gchil1906.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1091157..1092557 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1906.t2.stop1Gchil1906.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1092555..1092557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1906.t2Gchil1906.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1091157..1092557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1906.t2 ID=Gchil1906.t2|Name=Gchil1906.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=467bp
MGATNFPARKNPRQESHSNNTSFAVNLPQRSSTEARDELLRHLLPVPPSF
TLITSTSCTECVSHHLLFEDTARHPSVQNLRPLSITLHPSPSSSPPNDIR
LTLEQETEKGTQLFFLSFANAVLVHALTSSSWLSPPKKGKRVRPRTSFVI
GILPNDEYSSPSIDSWLFPMRNPERDPAASSPGDFLLPGESAAVMLYGAV
CGMAATMIGNDVKTVSEMHLFVVPKKVLTVLHRFAQAASNILSGGEHLQQ
LLDEGEQQVEDDIYTLRRHALANNLPCGCVMFPHASNPSKSVPKCVPPPA
IHVRVLRAMQLGSKEVEQWWRTHGNICEVNYLRQSYLHHLRGADLNVSIR
AHLSYLQLFHAHRPSNALYALHDQLNQTPTRDWELKEAFEWLAKAFRGSE
GRAKERMCSDDNEKQHEVFERELAYQVFGRLALFRTRNEVVRKFVSRLET
IAGPTRRDTKGVVEEF*
back to top

spliced messenger RNA

>Gchil1906.t2 ID=Gchil1906.t2|Name=Gchil1906.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00004439_pilon:1091157..1092557+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCTACAAATTTCCCCGCGAGGAAGAACCCGCGTCAAGAGTCTCA
TTCAAACAACACTTCATTCGCAGTGAATCTTCCTCAGCGAAGCTCAACTG
AGGCGCGCGATGAACTATTGCGTCATTTGCTTCCTGTTCCCCCGTCGTTC
ACACTTATAACTTCAACCAGCTGTACAGAATGTGTTTCCCATCACCTTCT
TTTCGAGGACACCGCAAGACACCCTTCCGTTCAAAACCTAAGACCGCTGT
CTATTACGTTGCACCCCTCACCTTCTTCATCGCCTCCAAACGATATCAGA
CTTACTTTGGAGCAAGAGACTGAAAAGGGAACACAGCTTTTCTTCCTTTC
GTTTGCAAACGCAGTCCTAGTGCACGCCTTAACTTCCTCCTCATGGTTAT
CGCCGCCAAAAAAAGGCAAGCGGGTTCGCCCTCGGACATCTTTTGTCATA
GGAATATTGCCAAATGATGAATACAGTTCGCCGTCAATCGACTCTTGGCT
TTTTCCCATGAGGAATCCGGAACGAGATCCGGCCGCATCCAGCCCTGGTG
ACTTCCTTCTTCCGGGTGAATCTGCAGCTGTTATGCTTTACGGTGCTGTT
TGCGGCATGGCCGCAACGATGATTGGAAATGACGTGAAGACAGTTTCCGA
AATGCACCTGTTTGTCGTGCCCAAAAAGGTATTGACTGTCTTGCACCGTT
TTGCGCAAGCAGCATCAAACATTTTAAGTGGCGGCGAACATTTACAACAA
CTTCTCGACGAAGGAGAGCAACAAGTAGAAGACGACATCTACACTCTGCG
CCGACACGCCTTGGCAAATAATCTTCCATGTGGTTGTGTCATGTTTCCGC
ACGCTAGTAATCCGTCCAAATCAGTACCGAAATGTGTGCCCCCTCCGGCA
ATACATGTTCGCGTTCTTCGAGCGATGCAGCTGGGGTCCAAAGAAGTTGA
GCAATGGTGGCGGACTCACGGGAACATCTGCGAAGTGAATTACCTTCGCC
AGAGCTATCTTCACCATCTTCGAGGGGCAGATTTGAATGTGTCGATACGG
GCCCACCTTAGTTACCTGCAGTTGTTTCATGCGCACAGGCCTAGTAATGC
CTTGTACGCTCTTCACGATCAATTGAACCAAACACCAACAAGAGATTGGG
AGTTGAAGGAGGCCTTTGAATGGTTGGCTAAGGCATTTCGAGGATCGGAA
GGTCGTGCAAAAGAACGCATGTGCAGCGATGACAATGAGAAGCAACACGA
AGTCTTCGAGAGGGAGCTAGCTTACCAAGTATTTGGAAGACTAGCTCTTT
TCAGAACCAGGAATGAAGTGGTTAGGAAGTTCGTCAGCAGACTCGAAACT
ATCGCAGGTCCAACACGGAGAGATACGAAAGGGGTCGTGGAGGAATTTTG
A
back to top

protein sequence of Gchil1906.t2

>Gchil1906.t2 ID=Gchil1906.t2|Name=Gchil1906.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=467bp
MGATNFPARKNPRQESHSNNTSFAVNLPQRSSTEARDELLRHLLPVPPSF
TLITSTSCTECVSHHLLFEDTARHPSVQNLRPLSITLHPSPSSSPPNDIR
LTLEQETEKGTQLFFLSFANAVLVHALTSSSWLSPPKKGKRVRPRTSFVI
GILPNDEYSSPSIDSWLFPMRNPERDPAASSPGDFLLPGESAAVMLYGAV
CGMAATMIGNDVKTVSEMHLFVVPKKVLTVLHRFAQAASNILSGGEHLQQ
LLDEGEQQVEDDIYTLRRHALANNLPCGCVMFPHASNPSKSVPKCVPPPA
IHVRVLRAMQLGSKEVEQWWRTHGNICEVNYLRQSYLHHLRGADLNVSIR
AHLSYLQLFHAHRPSNALYALHDQLNQTPTRDWELKEAFEWLAKAFRGSE
GRAKERMCSDDNEKQHEVFERELAYQVFGRLALFRTRNEVVRKFVSRLET
IAGPTRRDTKGVVEEF*
back to top

mRNA from alignment at tig00004439_pilon:1091157..1092557+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1906.t2 ID=Gchil1906.t2|Name=Gchil1906.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00004439_pilon:1091157..1092557+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCTACAAATTTCCCCGCGAGGAAGAACCCGCGTCAAGAGTCTCA
TTCAAACAACACTTCATTCGCAGTGAATCTTCCTCAGCGAAGCTCAACTG
AGGCGCGCGATGAACTATTGCGTCATTTGCTTCCTGTTCCCCCGTCGTTC
ACACTTATAACTTCAACCAGCTGTACAGAATGTGTTTCCCATCACCTTCT
TTTCGAGGACACCGCAAGACACCCTTCCGTTCAAAACCTAAGACCGCTGT
CTATTACGTTGCACCCCTCACCTTCTTCATCGCCTCCAAACGATATCAGA
CTTACTTTGGAGCAAGAGACTGAAAAGGGAACACAGCTTTTCTTCCTTTC
GTTTGCAAACGCAGTCCTAGTGCACGCCTTAACTTCCTCCTCATGGTTAT
CGCCGCCAAAAAAAGGCAAGCGGGTTCGCCCTCGGACATCTTTTGTCATA
GGAATATTGCCAAATGATGAATACAGTTCGCCGTCAATCGACTCTTGGCT
TTTTCCCATGAGGAATCCGGAACGAGATCCGGCCGCATCCAGCCCTGGTG
ACTTCCTTCTTCCGGGTGAATCTGCAGCTGTTATGCTTTACGGTGCTGTT
TGCGGCATGGCCGCAACGATGATTGGAAATGACGTGAAGACAGTTTCCGA
AATGCACCTGTTTGTCGTGCCCAAAAAGGTATTGACTGTCTTGCACCGTT
TTGCGCAAGCAGCATCAAACATTTTAAGTGGCGGCGAACATTTACAACAA
CTTCTCGACGAAGGAGAGCAACAAGTAGAAGACGACATCTACACTCTGCG
CCGACACGCCTTGGCAAATAATCTTCCATGTGGTTGTGTCATGTTTCCGC
ACGCTAGTAATCCGTCCAAATCAGTACCGAAATGTGTGCCCCCTCCGGCA
ATACATGTTCGCGTTCTTCGAGCGATGCAGCTGGGGTCCAAAGAAGTTGA
GCAATGGTGGCGGACTCACGGGAACATCTGCGAAGTGAATTACCTTCGCC
AGAGCTATCTTCACCATCTTCGAGGGGCAGATTTGAATGTGTCGATACGG
GCCCACCTTAGTTACCTGCAGTTGTTTCATGCGCACAGGCCTAGTAATGC
CTTGTACGCTCTTCACGATCAATTGAACCAAACACCAACAAGAGATTGGG
AGTTGAAGGAGGCCTTTGAATGGTTGGCTAAGGCATTTCGAGGATCGGAA
GGTCGTGCAAAAGAACGCATGTGCAGCGATGACAATGAGAAGCAACACGA
AGTCTTCGAGAGGGAGCTAGCTTACCAAGTATTTGGAAGACTAGCTCTTT
TCAGAACCAGGAATGAAGTGGTTAGGAAGTTCGTCAGCAGACTCGAAACT
ATCGCAGGTCCAACACGGAGAGATACGAAAGGGGTCGTGGAGGAATTTTG
A
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1091157..1092557+

>Gchil1906.t2 ID=Gchil1906.t2|Name=Gchil1906.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00004439_pilon:1091157..1092557+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCTACAAATTTCCCCGCGAGGAAGAACCCGCGTCAAGAGTCTCA
TTCAAACAACACTTCATTCGCAGTGAATCTTCCTCAGCGAAGCTCAACTG
AGGCGCGCGATGAACTATTGCGTCATTTGCTTCCTGTTCCCCCGTCGTTC
ACACTTATAACTTCAACCAGCTGTACAGAATGTGTTTCCCATCACCTTCT
TTTCGAGGACACCGCAAGACACCCTTCCGTTCAAAACCTAAGACCGCTGT
CTATTACGTTGCACCCCTCACCTTCTTCATCGCCTCCAAACGATATCAGA
CTTACTTTGGAGCAAGAGACTGAAAAGGGAACACAGCTTTTCTTCCTTTC
GTTTGCAAACGCAGTCCTAGTGCACGCCTTAACTTCCTCCTCATGGTTAT
CGCCGCCAAAAAAAGGCAAGCGGGTTCGCCCTCGGACATCTTTTGTCATA
GGAATATTGCCAAATGATGAATACAGTTCGCCGTCAATCGACTCTTGGCT
TTTTCCCATGAGGAATCCGGAACGAGATCCGGCCGCATCCAGCCCTGGTG
ACTTCCTTCTTCCGGGTGAATCTGCAGCTGTTATGCTTTACGGTGCTGTT
TGCGGCATGGCCGCAACGATGATTGGAAATGACGTGAAGACAGTTTCCGA
AATGCACCTGTTTGTCGTGCCCAAAAAGGTATTGACTGTCTTGCACCGTT
TTGCGCAAGCAGCATCAAACATTTTAAGTGGCGGCGAACATTTACAACAA
CTTCTCGACGAAGGAGAGCAACAAGTAGAAGACGACATCTACACTCTGCG
CCGACACGCCTTGGCAAATAATCTTCCATGTGGTTGTGTCATGTTTCCGC
ACGCTAGTAATCCGTCCAAATCAGTACCGAAATGTGTGCCCCCTCCGGCA
ATACATGTTCGCGTTCTTCGAGCGATGCAGCTGGGGTCCAAAGAAGTTGA
GCAATGGTGGCGGACTCACGGGAACATCTGCGAAGTGAATTACCTTCGCC
AGAGCTATCTTCACCATCTTCGAGGGGCAGATTTGAATGTGTCGATACGG
GCCCACCTTAGTTACCTGCAGTTGTTTCATGCGCACAGGCCTAGTAATGC
CTTGTACGCTCTTCACGATCAATTGAACCAAACACCAACAAGAGATTGGG
AGTTGAAGGAGGCCTTTGAATGGTTGGCTAAGGCATTTCGAGGATCGGAA
GGTCGTGCAAAAGAACGCATGTGCAGCGATGACAATGAGAAGCAACACGA
AGTCTTCGAGAGGGAGCTAGCTTACCAAGTATTTGGAAGACTAGCTCTTT
TCAGAACCAGGAATGAAGTGGTTAGGAAGTTCGTCAGCAGACTCGAAACT
ATCGCAGGTCCAACACGGAGAGATACGAAAGGGGTCGTGGAGGAATTTTG
A
back to top