Gchil1873.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1873.t1
Unique NameGchil1873.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:753329..754086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_003372-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue5.39e-47
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1873Gchil1873Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 753329..754086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1873.t1Gchil1873.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 753329..754086 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1873.t1.stop1Gchil1873.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 753329..753331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1873.t1.CDS1Gchil1873.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 753329..753751 -
Gchil1873.t1.CDS2Gchil1873.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 753856..754086 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1873.t1.exon1Gchil1873.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 753329..753751 -
Gchil1873.t1.exon2Gchil1873.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 753856..754086 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1873.t1.intron1Gchil1873.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 753752..753855 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1873.t1.start1Gchil1873.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 754084..754086 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1873.t1 ID=Gchil1873.t1|Name=Gchil1873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=218bp
MLRAAVIKPAQSPWASPVVLAPKQDGSWRFCVDYRRLNAVTVKDVYRIPR
MDEYIDSLGTATVFKTLDTNWRYLQVPRAIDILLARFKWRTCLVYLDDII
VFLDNLDKHLTHVRDIMTTLRDAGVSLKLKKSDFFTNTVKYLGHVIRPGR
VAIEETRVKSLKEAKEPRTQTELRSFLGLANVYRRFIPHFADMAAPLNAI
LRKGQPTKLNPLTPVQT*
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spliced messenger RNA

>Gchil1873.t1 ID=Gchil1873.t1|Name=Gchil1873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00004439_pilon:753329..754086- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGAGCAGCAGTCATTAAACCGGCTCAGTCGCCGTGGGCTTCTCC
AGTAGTACTGGCTCCAAAGCAGGATGGTTCCTGGAGGTTTTGCGTCGACT
ACCGTCGGTTGAATGCCGTCACCGTCAAGGACGTGTATCGAATCCCAAGA
ATGGACGAGTACATTGACTCGCTAGGCACCGCCACCGTCTTTAAAACTCT
GGACACCAATTGGAGATACTTGCAAGTTCCGCGAGCCATCGACATCCTAT
TGGCCCGCTTCAAATGGCGTACCTGCCTGGTCTACCTGGATGACATAATC
GTCTTCTTAGATAATCTGGACAAACATCTCACTCATGTGAGGGATATCAT
GACCACGCTTCGAGATGCGGGTGTCAGTCTTAAGTTGAAGAAAAGTGACT
TCTTCACAAACACCGTGAAGTATCTCGGCCATGTTATCCGTCCAGGACGT
GTTGCAATCGAGGAGACTCGTGTTAAGTCACTCAAAGAGGCTAAAGAACC
GCGGACGCAAACCGAGCTTCGTTCCTTTCTGGGACTCGCGAACGTCTACC
GACGATTCATCCCGCACTTTGCGGACATGGCTGCACCGTTAAACGCGATT
TTGCGGAAAGGCCAACCAACAAAACTTAACCCCTTAACCCCCGTTCAAAC
GTAA
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protein sequence of Gchil1873.t1

>Gchil1873.t1 ID=Gchil1873.t1|Name=Gchil1873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=218bp
MLRAAVIKPAQSPWASPVVLAPKQDGSWRFCVDYRRLNAVTVKDVYRIPR
MDEYIDSLGTATVFKTLDTNWRYLQVPRAIDILLARFKWRTCLVYLDDII
VFLDNLDKHLTHVRDIMTTLRDAGVSLKLKKSDFFTNTVKYLGHVIRPGR
VAIEETRVKSLKEAKEPRTQTELRSFLGLANVYRRFIPHFADMAAPLNAI
LRKGQPTKLNPLTPVQT*
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mRNA from alignment at tig00004439_pilon:753329..754086-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1873.t1 ID=Gchil1873.t1|Name=Gchil1873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=758bp|location=Sequence derived from alignment at tig00004439_pilon:753329..754086- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGAGCAGCAGTCATTAAACCGGCTCAGTCGCCGTGGGCTTCTCC
AGTAGTACTGGCTCCAAAGCAGGATGGTTCCTGGAGGTTTTGCGTCGACT
ACCGTCGGTTGAATGCCGTCACCGTCAAGGACGTGTATCGAATCCCAAGA
ATGGACGAGTACATTGACTCGCTAGGCACCGCCACCGTCTTTAAAACTCT
GGACACCAATTGGAGATACTTGCAAGTTCCGGTAAGGAAGCAAGAACAGG
ATAAAACCGCTTTCGCGTGTCACTCCGGTCTCTAACGTTTCAAACGGATG
CCTTTTGGTCTTTCCAACGCCCCGCTACTTTCCAGCGAGCCATCGACATC
CTATTGGCCCGCTTCAAATGGCGTACCTGCCTGGTCTACCTGGATGACAT
AATCGTCTTCTTAGATAATCTGGACAAACATCTCACTCATGTGAGGGATA
TCATGACCACGCTTCGAGATGCGGGTGTCAGTCTTAAGTTGAAGAAAAGT
GACTTCTTCACAAACACCGTGAAGTATCTCGGCCATGTTATCCGTCCAGG
ACGTGTTGCAATCGAGGAGACTCGTGTTAAGTCACTCAAAGAGGCTAAAG
AACCGCGGACGCAAACCGAGCTTCGTTCCTTTCTGGGACTCGCGAACGTC
TACCGACGATTCATCCCGCACTTTGCGGACATGGCTGCACCGTTAAACGC
GATTTTGCGGAAAGGCCAACCAACAAAACTTAACCCCTTAACCCCCGTTC
AAACGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:753329..754086-

>Gchil1873.t1 ID=Gchil1873.t1|Name=Gchil1873.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00004439_pilon:753329..754086- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGAGCAGCAGTCATTAAACCGGCTCAGTCGCCGTGGGCTTCTCC
AGTAGTACTGGCTCCAAAGCAGGATGGTTCCTGGAGGTTTTGCGTCGACT
ACCGTCGGTTGAATGCCGTCACCGTCAAGGACGTGTATCGAATCCCAAGA
ATGGACGAGTACATTGACTCGCTAGGCACCGCCACCGTCTTTAAAACTCT
GGACACCAATTGGAGATACTTGCAAGTTCCGCGAGCCATCGACATCCTAT
TGGCCCGCTTCAAATGGCGTACCTGCCTGGTCTACCTGGATGACATAATC
GTCTTCTTAGATAATCTGGACAAACATCTCACTCATGTGAGGGATATCAT
GACCACGCTTCGAGATGCGGGTGTCAGTCTTAAGTTGAAGAAAAGTGACT
TCTTCACAAACACCGTGAAGTATCTCGGCCATGTTATCCGTCCAGGACGT
GTTGCAATCGAGGAGACTCGTGTTAAGTCACTCAAAGAGGCTAAAGAACC
GCGGACGCAAACCGAGCTTCGTTCCTTTCTGGGACTCGCGAACGTCTACC
GACGATTCATCCCGCACTTTGCGGACATGGCTGCACCGTTAAACGCGATT
TTGCGGAAAGGCCAACCAACAAAACTTAACCCCTTAACCCCCGTTCAAAC
GTAA
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