Gchil1829.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1829.t1
Unique NameGchil1829.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2810639..2811961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708907.1
PFAMsGlucokinase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00845
KEGG ReactionR00299,R01600,R01786
KEGG Pathwayko00010,ko00052,ko00500,ko00520,ko00521,ko00524,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00052,map00500,map00520,map00521,map00524,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00549
Evalue7.7e-104
EggNOG OGsCOG0837@1|root,2QSB1@2759|Eukaryota
EC2.7.1.2
DescriptionGlucokinase
COG categoryG
BiGG ReactioniRC1080.CRv4_Au5_s1_g1623_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1829Gchil1829Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2810639..2811961 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1829.t1.start1Gchil1829.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2810639..2810641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1829.t1.CDS1Gchil1829.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2810639..2811961 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1829.t1.exon1Gchil1829.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2810639..2811961 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1829.t1.stop1Gchil1829.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2811959..2811961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1829.t1Gchil1829.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2810639..2811961 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1829.t1 ID=Gchil1829.t1|Name=Gchil1829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=441bp
MKLLVGDIGGTNARLVLYEGPDDPGELNDYKQVTSHKVISQKFYKTNEFV
SFTEVLCAFFALPANANGKVHCCCLAVAGPVANNHINFTNREGWIIDGHA
IEEEFGIDSVLLINDFVANGYGLLSLTEEELVTLQQGNPSAPDIFSAPVA
LIGAGTGLGECFLTPDKDGKVTAYATEGGHVEFAPRSKLEQELLSFLQIR
LATNPGVEHDSLDEDMLPRVSVERLVSGKGLENIYEFLREKYPDQVNESL
DEEYQKSTEKGRLIGSLKYNYHLFMRALQIMFGIYGGEVGNVALKYLPYG
GVYIAGGIAPKNIEFITSHDSDFMLRFGDKGRMSSLMPEFPVHVVMKEDL
GLRGAHNLASQNAAKLVPSQKTEAVSEKDAMAEDVPQKLPRESGLSMSQA
IREAVTSYPLTYAVVASTTAALTAAVCVGGLQILRNMKRF*
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spliced messenger RNA

>Gchil1829.t1 ID=Gchil1829.t1|Name=Gchil1829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00004403_pilon:2810639..2811961+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTACTGGTTGGGGACATCGGAGGCACGAATGCGCGCTTAGTGCT
CTACGAAGGCCCTGATGATCCTGGTGAGCTCAATGACTACAAACAGGTTA
CCTCTCACAAAGTGATTTCCCAAAAATTCTACAAGACCAATGAATTCGTG
TCGTTCACCGAAGTTCTCTGCGCTTTCTTCGCGCTCCCCGCCAATGCGAA
TGGTAAAGTTCATTGTTGCTGCCTAGCAGTTGCTGGACCAGTCGCCAACA
ATCACATCAACTTTACGAATCGCGAGGGGTGGATTATCGATGGTCATGCA
ATAGAGGAGGAGTTTGGAATTGACTCGGTTTTGCTCATCAACGATTTTGT
GGCAAACGGATATGGTTTACTGTCACTGACCGAAGAAGAACTGGTCACCT
TGCAGCAGGGTAACCCATCTGCGCCGGACATTTTCTCAGCACCTGTAGCA
CTGATTGGGGCGGGTACAGGACTGGGTGAATGCTTCCTGACGCCAGACAA
GGATGGAAAGGTAACGGCTTACGCCACAGAGGGTGGCCATGTTGAGTTCG
CTCCTCGTTCAAAGCTTGAGCAAGAGTTGTTGTCCTTTCTACAAATACGG
CTTGCTACAAATCCTGGCGTAGAACATGATTCTTTGGACGAAGACATGCT
CCCTCGCGTTAGCGTTGAGCGACTAGTGTCTGGAAAAGGACTTGAGAACA
TTTACGAGTTCCTGCGGGAGAAATACCCGGACCAGGTGAACGAGTCTCTC
GACGAAGAGTATCAAAAGTCGACAGAGAAAGGGCGTCTGATCGGCTCGCT
GAAGTACAACTACCACCTATTCATGCGCGCTCTGCAGATTATGTTTGGTA
TTTATGGCGGTGAAGTCGGAAACGTGGCTTTGAAGTATCTACCATACGGG
GGTGTATACATTGCAGGTGGCATTGCTCCAAAGAACATCGAATTCATTAC
AAGCCATGACTCTGACTTCATGTTGCGCTTTGGGGATAAGGGAAGGATGA
GTTCGTTAATGCCGGAGTTTCCTGTACATGTGGTGATGAAGGAAGATTTG
GGTCTCCGAGGAGCACACAATTTAGCGTCCCAAAATGCTGCAAAGCTTGT
TCCCAGCCAAAAGACGGAAGCTGTTTCTGAAAAAGACGCCATGGCGGAGG
ATGTACCACAGAAGTTACCTCGCGAGTCAGGTTTGTCCATGTCGCAGGCC
ATTCGGGAAGCGGTCACCTCTTATCCGCTGACGTATGCAGTGGTGGCAAG
CACAACGGCAGCGTTGACAGCTGCGGTTTGCGTTGGTGGTCTGCAGATAT
TGAGAAATATGAAACGCTTCTAA
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protein sequence of Gchil1829.t1

>Gchil1829.t1 ID=Gchil1829.t1|Name=Gchil1829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=441bp
MKLLVGDIGGTNARLVLYEGPDDPGELNDYKQVTSHKVISQKFYKTNEFV
SFTEVLCAFFALPANANGKVHCCCLAVAGPVANNHINFTNREGWIIDGHA
IEEEFGIDSVLLINDFVANGYGLLSLTEEELVTLQQGNPSAPDIFSAPVA
LIGAGTGLGECFLTPDKDGKVTAYATEGGHVEFAPRSKLEQELLSFLQIR
LATNPGVEHDSLDEDMLPRVSVERLVSGKGLENIYEFLREKYPDQVNESL
DEEYQKSTEKGRLIGSLKYNYHLFMRALQIMFGIYGGEVGNVALKYLPYG
GVYIAGGIAPKNIEFITSHDSDFMLRFGDKGRMSSLMPEFPVHVVMKEDL
GLRGAHNLASQNAAKLVPSQKTEAVSEKDAMAEDVPQKLPRESGLSMSQA
IREAVTSYPLTYAVVASTTAALTAAVCVGGLQILRNMKRF*
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mRNA from alignment at tig00004403_pilon:2810639..2811961+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1829.t1 ID=Gchil1829.t1|Name=Gchil1829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00004403_pilon:2810639..2811961+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAATTACTGGTTGGGGACATCGGAGGCACGAATGCGCGCTTAGTGCT
CTACGAAGGCCCTGATGATCCTGGTGAGCTCAATGACTACAAACAGGTTA
CCTCTCACAAAGTGATTTCCCAAAAATTCTACAAGACCAATGAATTCGTG
TCGTTCACCGAAGTTCTCTGCGCTTTCTTCGCGCTCCCCGCCAATGCGAA
TGGTAAAGTTCATTGTTGCTGCCTAGCAGTTGCTGGACCAGTCGCCAACA
ATCACATCAACTTTACGAATCGCGAGGGGTGGATTATCGATGGTCATGCA
ATAGAGGAGGAGTTTGGAATTGACTCGGTTTTGCTCATCAACGATTTTGT
GGCAAACGGATATGGTTTACTGTCACTGACCGAAGAAGAACTGGTCACCT
TGCAGCAGGGTAACCCATCTGCGCCGGACATTTTCTCAGCACCTGTAGCA
CTGATTGGGGCGGGTACAGGACTGGGTGAATGCTTCCTGACGCCAGACAA
GGATGGAAAGGTAACGGCTTACGCCACAGAGGGTGGCCATGTTGAGTTCG
CTCCTCGTTCAAAGCTTGAGCAAGAGTTGTTGTCCTTTCTACAAATACGG
CTTGCTACAAATCCTGGCGTAGAACATGATTCTTTGGACGAAGACATGCT
CCCTCGCGTTAGCGTTGAGCGACTAGTGTCTGGAAAAGGACTTGAGAACA
TTTACGAGTTCCTGCGGGAGAAATACCCGGACCAGGTGAACGAGTCTCTC
GACGAAGAGTATCAAAAGTCGACAGAGAAAGGGCGTCTGATCGGCTCGCT
GAAGTACAACTACCACCTATTCATGCGCGCTCTGCAGATTATGTTTGGTA
TTTATGGCGGTGAAGTCGGAAACGTGGCTTTGAAGTATCTACCATACGGG
GGTGTATACATTGCAGGTGGCATTGCTCCAAAGAACATCGAATTCATTAC
AAGCCATGACTCTGACTTCATGTTGCGCTTTGGGGATAAGGGAAGGATGA
GTTCGTTAATGCCGGAGTTTCCTGTACATGTGGTGATGAAGGAAGATTTG
GGTCTCCGAGGAGCACACAATTTAGCGTCCCAAAATGCTGCAAAGCTTGT
TCCCAGCCAAAAGACGGAAGCTGTTTCTGAAAAAGACGCCATGGCGGAGG
ATGTACCACAGAAGTTACCTCGCGAGTCAGGTTTGTCCATGTCGCAGGCC
ATTCGGGAAGCGGTCACCTCTTATCCGCTGACGTATGCAGTGGTGGCAAG
CACAACGGCAGCGTTGACAGCTGCGGTTTGCGTTGGTGGTCTGCAGATAT
TGAGAAATATGAAACGCTTCTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2810639..2811961+

>Gchil1829.t1 ID=Gchil1829.t1|Name=Gchil1829.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00004403_pilon:2810639..2811961+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAATTACTGGTTGGGGACATCGGAGGCACGAATGCGCGCTTAGTGCT
CTACGAAGGCCCTGATGATCCTGGTGAGCTCAATGACTACAAACAGGTTA
CCTCTCACAAAGTGATTTCCCAAAAATTCTACAAGACCAATGAATTCGTG
TCGTTCACCGAAGTTCTCTGCGCTTTCTTCGCGCTCCCCGCCAATGCGAA
TGGTAAAGTTCATTGTTGCTGCCTAGCAGTTGCTGGACCAGTCGCCAACA
ATCACATCAACTTTACGAATCGCGAGGGGTGGATTATCGATGGTCATGCA
ATAGAGGAGGAGTTTGGAATTGACTCGGTTTTGCTCATCAACGATTTTGT
GGCAAACGGATATGGTTTACTGTCACTGACCGAAGAAGAACTGGTCACCT
TGCAGCAGGGTAACCCATCTGCGCCGGACATTTTCTCAGCACCTGTAGCA
CTGATTGGGGCGGGTACAGGACTGGGTGAATGCTTCCTGACGCCAGACAA
GGATGGAAAGGTAACGGCTTACGCCACAGAGGGTGGCCATGTTGAGTTCG
CTCCTCGTTCAAAGCTTGAGCAAGAGTTGTTGTCCTTTCTACAAATACGG
CTTGCTACAAATCCTGGCGTAGAACATGATTCTTTGGACGAAGACATGCT
CCCTCGCGTTAGCGTTGAGCGACTAGTGTCTGGAAAAGGACTTGAGAACA
TTTACGAGTTCCTGCGGGAGAAATACCCGGACCAGGTGAACGAGTCTCTC
GACGAAGAGTATCAAAAGTCGACAGAGAAAGGGCGTCTGATCGGCTCGCT
GAAGTACAACTACCACCTATTCATGCGCGCTCTGCAGATTATGTTTGGTA
TTTATGGCGGTGAAGTCGGAAACGTGGCTTTGAAGTATCTACCATACGGG
GGTGTATACATTGCAGGTGGCATTGCTCCAAAGAACATCGAATTCATTAC
AAGCCATGACTCTGACTTCATGTTGCGCTTTGGGGATAAGGGAAGGATGA
GTTCGTTAATGCCGGAGTTTCCTGTACATGTGGTGATGAAGGAAGATTTG
GGTCTCCGAGGAGCACACAATTTAGCGTCCCAAAATGCTGCAAAGCTTGT
TCCCAGCCAAAAGACGGAAGCTGTTTCTGAAAAAGACGCCATGGCGGAGG
ATGTACCACAGAAGTTACCTCGCGAGTCAGGTTTGTCCATGTCGCAGGCC
ATTCGGGAAGCGGTCACCTCTTATCCGCTGACGTATGCAGTGGTGGCAAG
CACAACGGCAGCGTTGACAGCTGCGGTTTGCGTTGGTGGTCTGCAGATAT
TGAGAAATATGAAACGCTTCTAA
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