Gchil1806.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1806.t1
Unique NameGchil1806.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2594111..2594531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA17227
PFAMsNADH-u_ox-rdase
Max annot lvl2759|Eukaryota
Evalue1.52e-15
EggNOG OGs2BS7Y@1|root,2S3JI@2759|Eukaryota
DescriptionNADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1806Gchil1806Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2594111..2594531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1806.t1Gchil1806.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2594111..2594531 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1806.t1.stop1Gchil1806.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2594111..2594113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1806.t1.CDS1Gchil1806.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2594111..2594283 -
Gchil1806.t1.CDS2Gchil1806.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2594387..2594531 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1806.t1.exon1Gchil1806.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2594111..2594283 -
Gchil1806.t1.exon2Gchil1806.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2594387..2594531 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1806.t1.intron1Gchil1806.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2594284..2594386 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1806.t1.start1Gchil1806.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2594529..2594531 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1806.t1 ID=Gchil1806.t1|Name=Gchil1806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MAHPINDPTFPVIDSDPSFGKVMSSLRARDWQNAALATFVSLPFGYAAGR
PVVMRPSMYMAGVIGASFGLFLGFQNSFTRLTGYKENAVEIAKYGSKGTV
SKSSA*
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spliced messenger RNA

>Gchil1806.t1 ID=Gchil1806.t1|Name=Gchil1806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00004403_pilon:2594111..2594531- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATCCAATCAACGATCCAACATTTCCCGTCATCGATAGTGACCC
CTCCTTCGGGAAAGTGATGTCATCCCTTCGAGCCAGGGATTGGCAAAATG
CTGCGCTTGCAACCTTTGTGTCCCTACCGTTCGGCTATGCAGCAGGTCGC
CCAGTCGTAATGCGCCCATCCATGTACATGGCAGGAGTAATTGGTGCTAG
TTTTGGACTGTTTTTGGGTTTTCAAAACTCATTCACAAGACTCACTGGAT
ACAAGGAAAATGCCGTCGAGATTGCTAAGTACGGCTCTAAAGGCACAGTT
TCGAAATCGTCAGCATAG
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protein sequence of Gchil1806.t1

>Gchil1806.t1 ID=Gchil1806.t1|Name=Gchil1806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MAHPINDPTFPVIDSDPSFGKVMSSLRARDWQNAALATFVSLPFGYAAGR
PVVMRPSMYMAGVIGASFGLFLGFQNSFTRLTGYKENAVEIAKYGSKGTV
SKSSA*
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mRNA from alignment at tig00004403_pilon:2594111..2594531-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1806.t1 ID=Gchil1806.t1|Name=Gchil1806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=421bp|location=Sequence derived from alignment at tig00004403_pilon:2594111..2594531- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCATCCAATCAACGATCCAACATTTCCCGTCATCGATAGTGACCC
CTCCTTCGGGAAAGTGATGTCATCCCTTCGAGCCAGGGATTGGCAAAATG
CTGCGCTTGCAACCTTTGTGTCCCTACCGTTCGGCTATGCAGCAGGTTTG
TTTTGGTATTCACTCTGAACCTTTATTTAATGTTTTGTAATGCTGACTGA
ACTGACTCATCGAAAAACGTTTGCCCAACAAATGGAAATCTTTGTCAGGT
CGCCCAGTCGTAATGCGCCCATCCATGTACATGGCAGGAGTAATTGGTGC
TAGTTTTGGACTGTTTTTGGGTTTTCAAAACTCATTCACAAGACTCACTG
GATACAAGGAAAATGCCGTCGAGATTGCTAAGTACGGCTCTAAAGGCACA
GTTTCGAAATCGTCAGCATAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:2594111..2594531-

>Gchil1806.t1 ID=Gchil1806.t1|Name=Gchil1806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00004403_pilon:2594111..2594531- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCATCCAATCAACGATCCAACATTTCCCGTCATCGATAGTGACCC
CTCCTTCGGGAAAGTGATGTCATCCCTTCGAGCCAGGGATTGGCAAAATG
CTGCGCTTGCAACCTTTGTGTCCCTACCGTTCGGCTATGCAGCAGGTCGC
CCAGTCGTAATGCGCCCATCCATGTACATGGCAGGAGTAATTGGTGCTAG
TTTTGGACTGTTTTTGGGTTTTCAAAACTCATTCACAAGACTCACTGGAT
ACAAGGAAAATGCCGTCGAGATTGCTAAGTACGGCTCTAAAGGCACAGTT
TCGAAATCGTCAGCATAG
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