Gchil1784.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1784.t1
Unique NameGchil1784.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2425744..2426628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_06360T0
PFAMsMAGE
Max annot lvl4751|Fungi
GOsGO:0000724,GO:0000725,GO:0000793,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0106068,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Evalue1.12e-10
EggNOG OGsKOG4562@1|root,KOG4562@2759|Eukaryota,3A0G4@33154|Opisthokonta,3P24N@4751|Fungi
DescriptionMelanoma-associated antigen
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1784Gchil1784Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2425744..2426628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1784.t1.stop1Gchil1784.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2425744..2425746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1784.t1.CDS1Gchil1784.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2425744..2426628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1784.t1.exon1Gchil1784.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2425744..2426628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1784.t1.start1Gchil1784.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2426626..2426628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1784.t1Gchil1784.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2425744..2426628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1784.t1 ID=Gchil1784.t1|Name=Gchil1784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MGRKRSLSNRTSQSQNNVDDGEVLDVNSSSAADSGYVPLTDTQQDELAKR
ISRMLLWRQHRKRPVRRADLSSYALKLLPHVRGRPFSKAFNRARDMMRQN
LALEVKEIQKLTKRKVGGQSRSVATASQAYGYGYGAKGYILVSNATKPRL
EVPDILCEIGFLTLIAALIALQPGCRIEEDTLHHMLSKLGVHVREKQGHK
QLNNGNVKDLLEVKFIDMWYLEKEKEDNVTYYLLGPRLRAELSDDDLLEF
IHAVYKDGPSGHGLLDENGRNEIKARLNDAWGPEGPPDEREEHN*
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spliced messenger RNA

>Gchil1784.t1 ID=Gchil1784.t1|Name=Gchil1784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004403_pilon:2425744..2426628- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCAAACGGTCGCTTTCCAACCGTACTTCCCAGAGTCAGAATAA
TGTTGACGACGGCGAAGTATTAGATGTGAACAGCTCCTCCGCCGCTGATA
GTGGTTATGTACCGCTGACAGACACGCAACAAGATGAACTTGCCAAGCGT
ATATCCAGAATGCTATTGTGGCGTCAGCATAGAAAAAGACCTGTGCGGCG
GGCAGATCTCAGCTCATACGCGCTGAAATTATTACCCCACGTGCGCGGCA
GGCCATTTAGTAAGGCATTTAACAGAGCTCGAGATATGATGCGTCAAAAT
CTTGCTTTAGAAGTGAAGGAAATTCAGAAACTTACCAAACGCAAAGTTGG
AGGCCAATCGCGTTCTGTCGCTACTGCCTCACAAGCATATGGATATGGAT
ATGGCGCAAAAGGTTATATATTGGTCTCAAATGCAACGAAGCCGAGACTG
GAAGTGCCAGACATTCTGTGTGAAATCGGATTCCTCACACTTATTGCAGC
TCTCATTGCTCTGCAGCCGGGATGCAGGATTGAAGAAGACACATTGCACC
ATATGCTAAGCAAGTTGGGAGTGCATGTTCGTGAAAAACAAGGTCACAAA
CAACTGAACAATGGGAATGTTAAGGATTTGCTTGAGGTTAAGTTTATCGA
CATGTGGTACTTGGAAAAGGAAAAAGAAGACAACGTGACATACTATTTAC
TAGGTCCCAGGCTTCGTGCAGAACTATCAGACGATGATCTGCTTGAATTT
ATCCATGCCGTTTACAAAGATGGTCCGAGTGGTCACGGCTTGCTGGATGA
AAATGGAAGAAACGAAATCAAAGCCCGGCTCAATGATGCATGGGGTCCAG
AAGGCCCTCCGGATGAACGAGAAGAGCACAATTAG
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protein sequence of Gchil1784.t1

>Gchil1784.t1 ID=Gchil1784.t1|Name=Gchil1784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MGRKRSLSNRTSQSQNNVDDGEVLDVNSSSAADSGYVPLTDTQQDELAKR
ISRMLLWRQHRKRPVRRADLSSYALKLLPHVRGRPFSKAFNRARDMMRQN
LALEVKEIQKLTKRKVGGQSRSVATASQAYGYGYGAKGYILVSNATKPRL
EVPDILCEIGFLTLIAALIALQPGCRIEEDTLHHMLSKLGVHVREKQGHK
QLNNGNVKDLLEVKFIDMWYLEKEKEDNVTYYLLGPRLRAELSDDDLLEF
IHAVYKDGPSGHGLLDENGRNEIKARLNDAWGPEGPPDEREEHN*
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mRNA from alignment at tig00004403_pilon:2425744..2426628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1784.t1 ID=Gchil1784.t1|Name=Gchil1784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004403_pilon:2425744..2426628- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGCAAACGGTCGCTTTCCAACCGTACTTCCCAGAGTCAGAATAA
TGTTGACGACGGCGAAGTATTAGATGTGAACAGCTCCTCCGCCGCTGATA
GTGGTTATGTACCGCTGACAGACACGCAACAAGATGAACTTGCCAAGCGT
ATATCCAGAATGCTATTGTGGCGTCAGCATAGAAAAAGACCTGTGCGGCG
GGCAGATCTCAGCTCATACGCGCTGAAATTATTACCCCACGTGCGCGGCA
GGCCATTTAGTAAGGCATTTAACAGAGCTCGAGATATGATGCGTCAAAAT
CTTGCTTTAGAAGTGAAGGAAATTCAGAAACTTACCAAACGCAAAGTTGG
AGGCCAATCGCGTTCTGTCGCTACTGCCTCACAAGCATATGGATATGGAT
ATGGCGCAAAAGGTTATATATTGGTCTCAAATGCAACGAAGCCGAGACTG
GAAGTGCCAGACATTCTGTGTGAAATCGGATTCCTCACACTTATTGCAGC
TCTCATTGCTCTGCAGCCGGGATGCAGGATTGAAGAAGACACATTGCACC
ATATGCTAAGCAAGTTGGGAGTGCATGTTCGTGAAAAACAAGGTCACAAA
CAACTGAACAATGGGAATGTTAAGGATTTGCTTGAGGTTAAGTTTATCGA
CATGTGGTACTTGGAAAAGGAAAAAGAAGACAACGTGACATACTATTTAC
TAGGTCCCAGGCTTCGTGCAGAACTATCAGACGATGATCTGCTTGAATTT
ATCCATGCCGTTTACAAAGATGGTCCGAGTGGTCACGGCTTGCTGGATGA
AAATGGAAGAAACGAAATCAAAGCCCGGCTCAATGATGCATGGGGTCCAG
AAGGCCCTCCGGATGAACGAGAAGAGCACAATTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:2425744..2426628-

>Gchil1784.t1 ID=Gchil1784.t1|Name=Gchil1784.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00004403_pilon:2425744..2426628- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGCAAACGGTCGCTTTCCAACCGTACTTCCCAGAGTCAGAATAA
TGTTGACGACGGCGAAGTATTAGATGTGAACAGCTCCTCCGCCGCTGATA
GTGGTTATGTACCGCTGACAGACACGCAACAAGATGAACTTGCCAAGCGT
ATATCCAGAATGCTATTGTGGCGTCAGCATAGAAAAAGACCTGTGCGGCG
GGCAGATCTCAGCTCATACGCGCTGAAATTATTACCCCACGTGCGCGGCA
GGCCATTTAGTAAGGCATTTAACAGAGCTCGAGATATGATGCGTCAAAAT
CTTGCTTTAGAAGTGAAGGAAATTCAGAAACTTACCAAACGCAAAGTTGG
AGGCCAATCGCGTTCTGTCGCTACTGCCTCACAAGCATATGGATATGGAT
ATGGCGCAAAAGGTTATATATTGGTCTCAAATGCAACGAAGCCGAGACTG
GAAGTGCCAGACATTCTGTGTGAAATCGGATTCCTCACACTTATTGCAGC
TCTCATTGCTCTGCAGCCGGGATGCAGGATTGAAGAAGACACATTGCACC
ATATGCTAAGCAAGTTGGGAGTGCATGTTCGTGAAAAACAAGGTCACAAA
CAACTGAACAATGGGAATGTTAAGGATTTGCTTGAGGTTAAGTTTATCGA
CATGTGGTACTTGGAAAAGGAAAAAGAAGACAACGTGACATACTATTTAC
TAGGTCCCAGGCTTCGTGCAGAACTATCAGACGATGATCTGCTTGAATTT
ATCCATGCCGTTTACAAAGATGGTCCGAGTGGTCACGGCTTGCTGGATGA
AAATGGAAGAAACGAAATCAAAGCCCGGCTCAATGATGCATGGGGTCCAG
AAGGCCCTCCGGATGAACGAGAAGAGCACAATTAG
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