Gchil1774.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1774.t1
Unique NameGchil1774.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2304117..2305267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1774Gchil1774Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2304117..2305267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1774.t1Gchil1774.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2304117..2305267 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1774.t1.stop1Gchil1774.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2304117..2304119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1774.t1.CDS1Gchil1774.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2304117..2304721 -
Gchil1774.t1.CDS2Gchil1774.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2305081..2305267 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1774.t1.exon1Gchil1774.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2304117..2304721 -
Gchil1774.t1.exon2Gchil1774.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2305081..2305267 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1774.t1.intron1Gchil1774.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2304722..2305080 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1774.t1.start1Gchil1774.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2305265..2305267 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1774.t1 ID=Gchil1774.t1|Name=Gchil1774.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp
MMLGAFKAQVQQWSLHSIHLQPRFVSFGAELFARVGAFTLLQVLLTVYKS
RNVSFTKNCYNCIKEKDIKVSWGDISKNSCYRGSVFNVCRAYIGDDEEKV
AVKWVRPRHACGKDHGEKLIKESKESAKLVLDFMNHIGTKGWKVKVLIPK
KGRGYFFHDVRSRSVIVEPYLKSFEPFYESSDDLKHLRGTTYGTVLQALI
HFSIRHSKRESMISNLQGSVDYKKKTIYLSAPVIKKDFNSFSGKGSISAF
LRNHDCSRMCRKH*
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spliced messenger RNA

>Gchil1774.t1 ID=Gchil1774.t1|Name=Gchil1774.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00004403_pilon:2304117..2305267- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTAGGGGCCTTCAAGGCGCAAGTCCAGCAATGGTCCCTGCATTC
CATACACCTTCAACCTCGCTTCGTATCTTTTGGTGCTGAGCTGTTTGCAC
GTGTAGGTGCTTTCACGCTCCTGCAAGTTTTACTCACGGTGTATAAAAGC
CGGAATGTTTCTTTCACCAAGAACTGCTACAACTGCATCAAAGAGAAAGA
TATTAAAGTTTCATGGGGAGATATTAGCAAAAATTCATGCTATCGCGGTT
CCGTATTCAATGTTTGTCGGGCATATATCGGCGACGATGAGGAAAAGGTC
GCTGTGAAATGGGTGCGTCCGCGTCATGCATGTGGAAAAGATCACGGCGA
AAAACTTATCAAAGAATCAAAGGAGAGTGCGAAGTTAGTTCTGGACTTCA
TGAACCACATTGGCACCAAGGGGTGGAAGGTAAAAGTGTTGATTCCGAAG
AAGGGAAGGGGATACTTCTTTCATGATGTCAGAAGTCGCTCAGTGATTGT
GGAGCCCTATTTGAAGAGCTTTGAACCGTTTTACGAGTCTTCGGACGACC
TGAAACATTTGCGTGGTACTACTTATGGTACTGTCTTACAAGCTTTGATA
CACTTCAGTATCCGCCACAGCAAAAGAGAGAGCATGATATCGAACTTGCA
AGGGTCGGTTGATTACAAGAAGAAGACAATTTACCTGTCTGCACCTGTCA
TCAAGAAGGACTTCAATTCTTTCTCCGGAAAAGGAAGTATTTCCGCGTTC
TTGCGTAATCATGACTGCTCTAGGATGTGCAGAAAACACTGA
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protein sequence of Gchil1774.t1

>Gchil1774.t1 ID=Gchil1774.t1|Name=Gchil1774.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=264bp
MMLGAFKAQVQQWSLHSIHLQPRFVSFGAELFARVGAFTLLQVLLTVYKS
RNVSFTKNCYNCIKEKDIKVSWGDISKNSCYRGSVFNVCRAYIGDDEEKV
AVKWVRPRHACGKDHGEKLIKESKESAKLVLDFMNHIGTKGWKVKVLIPK
KGRGYFFHDVRSRSVIVEPYLKSFEPFYESSDDLKHLRGTTYGTVLQALI
HFSIRHSKRESMISNLQGSVDYKKKTIYLSAPVIKKDFNSFSGKGSISAF
LRNHDCSRMCRKH*
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mRNA from alignment at tig00004403_pilon:2304117..2305267-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1774.t1 ID=Gchil1774.t1|Name=Gchil1774.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1151bp|location=Sequence derived from alignment at tig00004403_pilon:2304117..2305267- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCTAGGGGCCTTCAAGGCGCAAGTCCAGCAATGGTCCCTGCATTC
CATACACCTTCAACCTCGCTTCGTATCTTTTGGTGCTGAGCTGTTTGCAC
GTGTAGGTGCTTTCACGCTCCTGCAAGTTTTACTCACGGTGTATAAAAGC
CGGAATGTTTCTTTCACCAAGAACTGCTACAACTGCAGTTGCAGTCCGAG
CGCTTCCGCTTCCGTTTCAAATATCTGGAGCTGACGGTATTTTTCGCGAT
GTCTTCATCCATGTACTGTTGCAGCCGTGACCGGTGCTCTTCTAAGAGAA
GCTCACAACCATCATCGATTGAGCGTGGTAATTGTTCTTACCGCTCGTGC
TCACTTTGCAAGAATTGGCACTGCAGTTGCACTCCGTGCGGCAGTCGCGA
GAGGGCCAAGCCTCGTCGAAGAAATAGCAACCATGAAGCTGTTTTCTGCA
GGTGCAGGTGCATTCCCCGCTGTTTGTGGTGGTGCGAGAGAGAGGATTGG
TGGCCACAATATCCTGAGTTTTCCTTTCGCGATGTAATCCATGAAGTCAA
AGAGAAAGATATTAAAGTTTCATGGGGAGATATTAGCAAAAATTCATGCT
ATCGCGGTTCCGTATTCAATGTTTGTCGGGCATATATCGGCGACGATGAG
GAAAAGGTCGCTGTGAAATGGGTGCGTCCGCGTCATGCATGTGGAAAAGA
TCACGGCGAAAAACTTATCAAAGAATCAAAGGAGAGTGCGAAGTTAGTTC
TGGACTTCATGAACCACATTGGCACCAAGGGGTGGAAGGTAAAAGTGTTG
ATTCCGAAGAAGGGAAGGGGATACTTCTTTCATGATGTCAGAAGTCGCTC
AGTGATTGTGGAGCCCTATTTGAAGAGCTTTGAACCGTTTTACGAGTCTT
CGGACGACCTGAAACATTTGCGTGGTACTACTTATGGTACTGTCTTACAA
GCTTTGATACACTTCAGTATCCGCCACAGCAAAAGAGAGAGCATGATATC
GAACTTGCAAGGGTCGGTTGATTACAAGAAGAAGACAATTTACCTGTCTG
CACCTGTCATCAAGAAGGACTTCAATTCTTTCTCCGGAAAAGGAAGTATT
TCCGCGTTCTTGCGTAATCATGACTGCTCTAGGATGTGCAGAAAACACTG
A
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Coding sequence (CDS) from alignment at tig00004403_pilon:2304117..2305267-

>Gchil1774.t1 ID=Gchil1774.t1|Name=Gchil1774.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00004403_pilon:2304117..2305267- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCTAGGGGCCTTCAAGGCGCAAGTCCAGCAATGGTCCCTGCATTC
CATACACCTTCAACCTCGCTTCGTATCTTTTGGTGCTGAGCTGTTTGCAC
GTGTAGGTGCTTTCACGCTCCTGCAAGTTTTACTCACGGTGTATAAAAGC
CGGAATGTTTCTTTCACCAAGAACTGCTACAACTGCATCAAAGAGAAAGA
TATTAAAGTTTCATGGGGAGATATTAGCAAAAATTCATGCTATCGCGGTT
CCGTATTCAATGTTTGTCGGGCATATATCGGCGACGATGAGGAAAAGGTC
GCTGTGAAATGGGTGCGTCCGCGTCATGCATGTGGAAAAGATCACGGCGA
AAAACTTATCAAAGAATCAAAGGAGAGTGCGAAGTTAGTTCTGGACTTCA
TGAACCACATTGGCACCAAGGGGTGGAAGGTAAAAGTGTTGATTCCGAAG
AAGGGAAGGGGATACTTCTTTCATGATGTCAGAAGTCGCTCAGTGATTGT
GGAGCCCTATTTGAAGAGCTTTGAACCGTTTTACGAGTCTTCGGACGACC
TGAAACATTTGCGTGGTACTACTTATGGTACTGTCTTACAAGCTTTGATA
CACTTCAGTATCCGCCACAGCAAAAGAGAGAGCATGATATCGAACTTGCA
AGGGTCGGTTGATTACAAGAAGAAGACAATTTACCTGTCTGCACCTGTCA
TCAAGAAGGACTTCAATTCTTTCTCCGGAAAAGGAAGTATTTCCGCGTTC
TTGCGTAATCATGACTGCTCTAGGATGTGCAGAAAACACTGA
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