Gchil1767.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1767.t1
Unique Name	Gchil1767.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2274199..2276064 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4577.GRMZM2G025854_P03
PFAMs	PGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00408
KEGG ko	ko:K01835
KEGG Reaction	R00959,R01057,R08639
KEGG Pathway	ko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG Module	M00549
GOs	GO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009941,GO:0009987,GO:0010319,GO:0015980,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0048046,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:1901575,GO:1901576
Evalue	3.03e-199
EggNOG OGs	COG0033@1\|root,KOG0625@2759\|Eukaryota,37R89@33090\|Viridiplantae,3GETM@35493\|Streptophyta,3KX9J@4447\|Liliopsida,3I7I4@38820\|Poales
EC	5.4.2.2
Description	Phosphoglucomutase/phosphomannomutase, C-terminal domain
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1767	Gchil1767	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2274199..2276064 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1767.t1.stop1	Gchil1767.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2274199..2274201 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1767.t1.CDS1	Gchil1767.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2274199..2276064 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1767.t1.exon1	Gchil1767.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2274199..2276064 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1767.t1.start1	Gchil1767.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2276062..2276064 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1767.t1	Gchil1767.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2274199..2276064 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2274199..2276064-
coding sequence from alignment at tig00004403_pilon:2274199..2276064-

mRNA sequence

>Gchil1767.t1 ID=Gchil1767.t1|Name=Gchil1767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=622bp
MYSPTFIVSLPASALKSPNIAKHRTGAAYSSGARAARTSRPRFQMCQPLE
TQSSVHPSELPMLTYDTKPIPGQTTGTSGMRKKTSVLITDPSFLPNWVQS
LFDALGGPPELSGRTLILGGDGRFYNKSAAQTILRMAAANGFARVIVGRN
ALLTTPAVSALIPSSKALGGIILTASHNPAGLDGDWGIKYNTESGAPALK
ALTDLIYEHTQKISQYRLADFGSDIDLSTEGVTSFGNGKFVIEVIDSVDH
YLKMLRSIFDFDALKALIARPDFSMCFDAMHASTGEYARVIFGIELGAGF
KSVINADPKEDFGGGHPDPNLTYAAKLVDTLDPEKNPTAPQFGAASDGDG
DRNMILGQGVFVSPADSVAIIADYATRAIPYFGRQGLKGVARSMPTASAL
DRVAEEKGVKLYYTPTGWKYFTNLMDAGKINICGEESFGTSSDHIREKDG
IWAVLAWLSILAFENRDSEIGQFVTVEDILLAHWRKYGRTYNLRHDYEAV
ESKDGEVFMLNLKGMANGIVPYLDEVQRVRDFEYKDPVDGSTVKDQGIIV
DIKTGGRVVFRLSGTGSAGATIRIYFEQYEPPSPNPQNNDPRIVMKDIVD
IARRLTRIEEFTGRSAPTVIT*

spliced messenger RNA

>Gchil1767.t1 ID=Gchil1767.t1|Name=Gchil1767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00004403_pilon:2274199..2276064- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTCGCCAACTTTTATCGTGTCTCTGCCTGCTTCAGCCTTAAAGAG
TCCAAACATTGCAAAACATCGAACGGGCGCTGCATACAGCTCCGGGGCAA
GGGCGGCGCGAACCTCAAGACCCCGGTTTCAAATGTGTCAGCCATTGGAA
ACCCAATCATCCGTACATCCTTCAGAATTACCAATGCTCACATACGACAC
AAAGCCCATCCCCGGGCAAACCACTGGGACGAGTGGCATGCGCAAGAAGA
CTTCTGTACTAATAACAGATCCGTCTTTTCTTCCAAATTGGGTTCAGTCA
CTCTTCGATGCTCTAGGAGGGCCGCCCGAACTGTCTGGTCGTACTCTAAT
ACTCGGCGGTGACGGTCGTTTTTATAATAAGAGTGCGGCTCAAACGATTT
TGCGCATGGCGGCTGCGAACGGATTTGCTCGCGTTATCGTTGGCAGAAAT
GCGTTGCTTACGACACCAGCTGTATCCGCTCTGATTCCAAGTAGCAAAGC
GCTTGGAGGTATAATTCTCACTGCTAGCCACAATCCAGCCGGCCTGGATG
GCGACTGGGGGATAAAGTATAACACTGAATCCGGCGCACCCGCGTTAAAG
GCTTTAACGGATTTAATCTACGAACATACCCAGAAGATTTCTCAGTATAG
GCTTGCAGATTTCGGATCTGACATTGACTTATCAACCGAAGGGGTCACTT
CATTTGGAAATGGGAAGTTTGTTATTGAAGTAATCGATTCAGTTGACCAC
TACTTGAAAATGCTGCGCTCCATATTTGACTTTGACGCTTTGAAAGCACT
GATTGCTCGACCTGACTTTTCCATGTGTTTTGATGCCATGCACGCTTCAA
CTGGAGAATATGCCCGCGTTATATTCGGCATTGAGCTCGGAGCAGGGTTT
AAATCAGTCATAAATGCCGATCCGAAAGAAGACTTTGGCGGTGGCCATCC
GGATCCTAATCTCACGTACGCAGCGAAACTCGTAGACACCTTGGATCCGG
AAAAAAATCCAACGGCTCCTCAGTTCGGCGCTGCTTCAGACGGCGATGGC
GACCGGAATATGATTCTTGGTCAAGGAGTGTTCGTAAGCCCGGCTGATTC
TGTTGCTATTATAGCTGATTACGCCACGAGAGCTATCCCATACTTTGGCC
GGCAAGGACTGAAGGGTGTTGCGCGCTCAATGCCAACGGCATCGGCGTTG
GATAGAGTTGCGGAAGAAAAGGGGGTTAAGCTGTACTATACTCCAACTGG
ATGGAAGTACTTCACGAATTTAATGGACGCTGGAAAGATCAATATATGCG
GAGAGGAATCATTCGGTACAAGCTCTGATCACATACGGGAAAAAGATGGC
ATTTGGGCAGTTTTAGCTTGGCTGAGCATTTTAGCTTTCGAAAATCGTGA
CTCCGAGATCGGGCAATTCGTTACGGTGGAAGACATACTCCTCGCCCACT
GGAGAAAGTATGGACGTACGTACAATTTACGTCATGATTACGAAGCCGTG
GAATCAAAGGACGGAGAAGTGTTCATGCTCAACCTCAAGGGAATGGCTAA
TGGCATCGTTCCGTACCTTGATGAAGTGCAGAGGGTTCGTGATTTTGAGT
ACAAAGATCCTGTGGACGGATCCACCGTTAAAGACCAAGGGATCATCGTA
GATATCAAGACCGGTGGACGTGTTGTGTTTCGATTAAGCGGCACCGGATC
AGCAGGTGCAACGATTCGAATATACTTTGAACAATACGAACCGCCATCAC
CAAACCCGCAAAACAATGATCCTAGGATTGTTATGAAGGACATCGTAGAT
ATCGCTCGTAGACTTACAAGAATTGAGGAGTTCACCGGTCGAAGCGCCCC
GACTGTGATTACATAA

protein sequence of Gchil1767.t1

>Gchil1767.t1 ID=Gchil1767.t1|Name=Gchil1767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=622bp
MYSPTFIVSLPASALKSPNIAKHRTGAAYSSGARAARTSRPRFQMCQPLE
TQSSVHPSELPMLTYDTKPIPGQTTGTSGMRKKTSVLITDPSFLPNWVQS
LFDALGGPPELSGRTLILGGDGRFYNKSAAQTILRMAAANGFARVIVGRN
ALLTTPAVSALIPSSKALGGIILTASHNPAGLDGDWGIKYNTESGAPALK
ALTDLIYEHTQKISQYRLADFGSDIDLSTEGVTSFGNGKFVIEVIDSVDH
YLKMLRSIFDFDALKALIARPDFSMCFDAMHASTGEYARVIFGIELGAGF
KSVINADPKEDFGGGHPDPNLTYAAKLVDTLDPEKNPTAPQFGAASDGDG
DRNMILGQGVFVSPADSVAIIADYATRAIPYFGRQGLKGVARSMPTASAL
DRVAEEKGVKLYYTPTGWKYFTNLMDAGKINICGEESFGTSSDHIREKDG
IWAVLAWLSILAFENRDSEIGQFVTVEDILLAHWRKYGRTYNLRHDYEAV
ESKDGEVFMLNLKGMANGIVPYLDEVQRVRDFEYKDPVDGSTVKDQGIIV
DIKTGGRVVFRLSGTGSAGATIRIYFEQYEPPSPNPQNNDPRIVMKDIVD
IARRLTRIEEFTGRSAPTVIT*

mRNA from alignment at tig00004403_pilon:2274199..2276064-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1767.t1 ID=Gchil1767.t1|Name=Gchil1767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00004403_pilon:2274199..2276064- (Gracilaria chilensis NLEC103_M9 male)
ATGTATTCGCCAACTTTTATCGTGTCTCTGCCTGCTTCAGCCTTAAAGAG
TCCAAACATTGCAAAACATCGAACGGGCGCTGCATACAGCTCCGGGGCAA
GGGCGGCGCGAACCTCAAGACCCCGGTTTCAAATGTGTCAGCCATTGGAA
ACCCAATCATCCGTACATCCTTCAGAATTACCAATGCTCACATACGACAC
AAAGCCCATCCCCGGGCAAACCACTGGGACGAGTGGCATGCGCAAGAAGA
CTTCTGTACTAATAACAGATCCGTCTTTTCTTCCAAATTGGGTTCAGTCA
CTCTTCGATGCTCTAGGAGGGCCGCCCGAACTGTCTGGTCGTACTCTAAT
ACTCGGCGGTGACGGTCGTTTTTATAATAAGAGTGCGGCTCAAACGATTT
TGCGCATGGCGGCTGCGAACGGATTTGCTCGCGTTATCGTTGGCAGAAAT
GCGTTGCTTACGACACCAGCTGTATCCGCTCTGATTCCAAGTAGCAAAGC
GCTTGGAGGTATAATTCTCACTGCTAGCCACAATCCAGCCGGCCTGGATG
GCGACTGGGGGATAAAGTATAACACTGAATCCGGCGCACCCGCGTTAAAG
GCTTTAACGGATTTAATCTACGAACATACCCAGAAGATTTCTCAGTATAG
GCTTGCAGATTTCGGATCTGACATTGACTTATCAACCGAAGGGGTCACTT
CATTTGGAAATGGGAAGTTTGTTATTGAAGTAATCGATTCAGTTGACCAC
TACTTGAAAATGCTGCGCTCCATATTTGACTTTGACGCTTTGAAAGCACT
GATTGCTCGACCTGACTTTTCCATGTGTTTTGATGCCATGCACGCTTCAA
CTGGAGAATATGCCCGCGTTATATTCGGCATTGAGCTCGGAGCAGGGTTT
AAATCAGTCATAAATGCCGATCCGAAAGAAGACTTTGGCGGTGGCCATCC
GGATCCTAATCTCACGTACGCAGCGAAACTCGTAGACACCTTGGATCCGG
AAAAAAATCCAACGGCTCCTCAGTTCGGCGCTGCTTCAGACGGCGATGGC
GACCGGAATATGATTCTTGGTCAAGGAGTGTTCGTAAGCCCGGCTGATTC
TGTTGCTATTATAGCTGATTACGCCACGAGAGCTATCCCATACTTTGGCC
GGCAAGGACTGAAGGGTGTTGCGCGCTCAATGCCAACGGCATCGGCGTTG
GATAGAGTTGCGGAAGAAAAGGGGGTTAAGCTGTACTATACTCCAACTGG
ATGGAAGTACTTCACGAATTTAATGGACGCTGGAAAGATCAATATATGCG
GAGAGGAATCATTCGGTACAAGCTCTGATCACATACGGGAAAAAGATGGC
ATTTGGGCAGTTTTAGCTTGGCTGAGCATTTTAGCTTTCGAAAATCGTGA
CTCCGAGATCGGGCAATTCGTTACGGTGGAAGACATACTCCTCGCCCACT
GGAGAAAGTATGGACGTACGTACAATTTACGTCATGATTACGAAGCCGTG
GAATCAAAGGACGGAGAAGTGTTCATGCTCAACCTCAAGGGAATGGCTAA
TGGCATCGTTCCGTACCTTGATGAAGTGCAGAGGGTTCGTGATTTTGAGT
ACAAAGATCCTGTGGACGGATCCACCGTTAAAGACCAAGGGATCATCGTA
GATATCAAGACCGGTGGACGTGTTGTGTTTCGATTAAGCGGCACCGGATC
AGCAGGTGCAACGATTCGAATATACTTTGAACAATACGAACCGCCATCAC
CAAACCCGCAAAACAATGATCCTAGGATTGTTATGAAGGACATCGTAGAT
ATCGCTCGTAGACTTACAAGAATTGAGGAGTTCACCGGTCGAAGCGCCCC
GACTGTGATTACATAA

Coding sequence (CDS) from alignment at tig00004403_pilon:2274199..2276064-

>Gchil1767.t1 ID=Gchil1767.t1|Name=Gchil1767.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1866bp|location=Sequence derived from alignment at tig00004403_pilon:2274199..2276064- (Gracilaria chilensis NLEC103_M9 male)
ATGTATTCGCCAACTTTTATCGTGTCTCTGCCTGCTTCAGCCTTAAAGAG
TCCAAACATTGCAAAACATCGAACGGGCGCTGCATACAGCTCCGGGGCAA
GGGCGGCGCGAACCTCAAGACCCCGGTTTCAAATGTGTCAGCCATTGGAA
ACCCAATCATCCGTACATCCTTCAGAATTACCAATGCTCACATACGACAC
AAAGCCCATCCCCGGGCAAACCACTGGGACGAGTGGCATGCGCAAGAAGA
CTTCTGTACTAATAACAGATCCGTCTTTTCTTCCAAATTGGGTTCAGTCA
CTCTTCGATGCTCTAGGAGGGCCGCCCGAACTGTCTGGTCGTACTCTAAT
ACTCGGCGGTGACGGTCGTTTTTATAATAAGAGTGCGGCTCAAACGATTT
TGCGCATGGCGGCTGCGAACGGATTTGCTCGCGTTATCGTTGGCAGAAAT
GCGTTGCTTACGACACCAGCTGTATCCGCTCTGATTCCAAGTAGCAAAGC
GCTTGGAGGTATAATTCTCACTGCTAGCCACAATCCAGCCGGCCTGGATG
GCGACTGGGGGATAAAGTATAACACTGAATCCGGCGCACCCGCGTTAAAG
GCTTTAACGGATTTAATCTACGAACATACCCAGAAGATTTCTCAGTATAG
GCTTGCAGATTTCGGATCTGACATTGACTTATCAACCGAAGGGGTCACTT
CATTTGGAAATGGGAAGTTTGTTATTGAAGTAATCGATTCAGTTGACCAC
TACTTGAAAATGCTGCGCTCCATATTTGACTTTGACGCTTTGAAAGCACT
GATTGCTCGACCTGACTTTTCCATGTGTTTTGATGCCATGCACGCTTCAA
CTGGAGAATATGCCCGCGTTATATTCGGCATTGAGCTCGGAGCAGGGTTT
AAATCAGTCATAAATGCCGATCCGAAAGAAGACTTTGGCGGTGGCCATCC
GGATCCTAATCTCACGTACGCAGCGAAACTCGTAGACACCTTGGATCCGG
AAAAAAATCCAACGGCTCCTCAGTTCGGCGCTGCTTCAGACGGCGATGGC
GACCGGAATATGATTCTTGGTCAAGGAGTGTTCGTAAGCCCGGCTGATTC
TGTTGCTATTATAGCTGATTACGCCACGAGAGCTATCCCATACTTTGGCC
GGCAAGGACTGAAGGGTGTTGCGCGCTCAATGCCAACGGCATCGGCGTTG
GATAGAGTTGCGGAAGAAAAGGGGGTTAAGCTGTACTATACTCCAACTGG
ATGGAAGTACTTCACGAATTTAATGGACGCTGGAAAGATCAATATATGCG
GAGAGGAATCATTCGGTACAAGCTCTGATCACATACGGGAAAAAGATGGC
ATTTGGGCAGTTTTAGCTTGGCTGAGCATTTTAGCTTTCGAAAATCGTGA
CTCCGAGATCGGGCAATTCGTTACGGTGGAAGACATACTCCTCGCCCACT
GGAGAAAGTATGGACGTACGTACAATTTACGTCATGATTACGAAGCCGTG
GAATCAAAGGACGGAGAAGTGTTCATGCTCAACCTCAAGGGAATGGCTAA
TGGCATCGTTCCGTACCTTGATGAAGTGCAGAGGGTTCGTGATTTTGAGT
ACAAAGATCCTGTGGACGGATCCACCGTTAAAGACCAAGGGATCATCGTA
GATATCAAGACCGGTGGACGTGTTGTGTTTCGATTAAGCGGCACCGGATC
AGCAGGTGCAACGATTCGAATATACTTTGAACAATACGAACCGCCATCAC
CAAACCCGCAAAACAATGATCCTAGGATTGTTATGAAGGACATCGTAGAT
ATCGCTCGTAGACTTACAAGAATTGAGGAGTTCACCGGTCGAAGCGCCCC
GACTGTGATTACATAA